FFCP PHASE1:Hg19::chr15:71146436..71146447,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:71146436..71146447,- to FFCP PHASE1:Hg19::chr15:71146436..71146447,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55323 | |EntrezGene=55323 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24012 | |HGNC=24012 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000559140_5end | |||
|cluster_id=chr15:71146436..71146447,- | |||
|coexpression_cluster_id=C3509 | |||
|description=CAGE_peak_3_at_LARP6_5end | |||
|id=chr15:71146436..71146447,- | |||
|ontology_enrichment_celltype=CL:0000055!2.04e-29!180;CL:0000192!2.69e-15!42;CL:0000514!2.69e-15!42;CL:0000680!2.81e-15!57;CL:0000056!2.81e-15!57;CL:0000355!2.81e-15!57;CL:0000183!4.40e-15!59;CL:0000359!9.70e-15!32;CL:0000187!2.42e-14!54;CL:0000057!3.38e-13!75;CL:0000393!2.07e-12!60;CL:0000211!2.07e-12!60;CL:0000222!4.98e-08!119;CL:0002321!7.38e-07!248;CL:0000220!7.55e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.52e-15;32!CL:0000192;6.64e-12;43!CL:0000187;1.83e-07;55!CL:0002539;3.14e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.64e-16,32;CL:0000192,9.08e-16,43;CL:0000514,9.08e-16,43;CL:0000680,6.44e-15,58;CL:0000056,6.44e-15,58;CL:0000355,6.44e-15,58;CL:0000187,7.72e-14,55;CL:0000057,5.90e-12,76;CL:0000393,8.08e-11,61;CL:0000211,8.08e-11,61;CL:0002539,3.61e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;6.64e-12;43!CL:0000355;2.00e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.38e-18!365;UBERON:0000914!2.14e-14!83;UBERON:0002329!2.14e-14!83;UBERON:0003077!2.14e-14!83;UBERON:0003059!2.14e-14!83;UBERON:0007282!2.14e-14!83;UBERON:0009618!2.14e-14!83;UBERON:0007285!2.14e-14!83;UBERON:0001134!8.80e-14!61;UBERON:0002036!8.80e-14!61;UBERON:0003082!8.80e-14!61;UBERON:0002385!4.02e-13!63;UBERON:0001015!4.02e-13!63;UBERON:0000383!4.02e-13!63;UBERON:0000119!5.75e-13!312;UBERON:0004290!1.05e-12!70;UBERON:0000481!1.45e-12!347;UBERON:0000483!2.76e-12!309;UBERON:0001637!4.10e-12!42;UBERON:0003509!4.10e-12!42;UBERON:0004572!4.10e-12!42;UBERON:0000486!1.09e-11!82;UBERON:0000477!1.63e-11!286;UBERON:0004573!7.98e-11!33;UBERON:0004571!7.98e-11!33;UBERON:0004111!1.63e-10!241;UBERON:0000025!2.07e-10!194;UBERON:0000468!3.89e-10!659;UBERON:0000073!1.86e-09!94;UBERON:0001016!1.86e-09!94;UBERON:0002049!2.91e-09!79;UBERON:0007798!2.91e-09!79;UBERON:0000033!3.12e-09!123;UBERON:0004872!4.74e-09!84;UBERON:0000955!7.05e-09!69;UBERON:0006238!7.05e-09!69;UBERON:0000467!8.85e-09!625;UBERON:0005743!9.43e-09!86;UBERON:0002100!1.21e-08!216;UBERON:0000480!1.41e-08!626;UBERON:0001009!3.14e-08!113;UBERON:0001017!4.10e-08!82;UBERON:0001981!4.21e-08!60;UBERON:0007500!4.21e-08!60;UBERON:0004537!4.21e-08!60;UBERON:0006965!4.21e-08!60;UBERON:0002616!5.56e-08!59;UBERON:0004535!8.13e-08!110;UBERON:0001049!8.60e-08!57;UBERON:0005068!8.60e-08!57;UBERON:0006241!8.60e-08!57;UBERON:0007135!8.60e-08!57;UBERON:0000153!8.99e-08!129;UBERON:0007811!8.99e-08!129;UBERON:0000055!1.46e-07!69;UBERON:0003075!1.78e-07!86;UBERON:0007284!1.78e-07!86;UBERON:0002346!3.45e-07!90;UBERON:0005256!3.93e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.41e-10;33!UBERON:0004571;3.41e-10;33!UBERON:0001637;6.22e-08;42!UBERON:0003509;6.22e-08;42!UBERON:0004572;6.22e-08;42!UBERON:0004237;3.14e-07;10!UBERON:0004695;3.14e-07;10!UBERON:0002111;3.14e-07;10!UBERON:0004178;3.14e-07;10 | |||
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| ||
|short_description=p3@LARP6 | |||
}} | }} |
Latest revision as of 20:58, 18 September 2015
Short description: | p3@LARP6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LARP6_5end |
Coexpression cluster: | C3509_Fibroblast_Keratocytes_Myoblast_tridermal_Smooth_optic_embryonic |
Association with transcript: | 18bp_to_ENST00000559140_5end |
EntrezGene: | LARP6 |
HGNC: | 24012 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.64e-16 | 32 |
smooth muscle cell | 9.08e-16 | 43 |
smooth muscle myoblast | 9.08e-16 | 43 |
muscle precursor cell | 6.44e-15 | 58 |
myoblast | 6.44e-15 | 58 |
multi-potent skeletal muscle stem cell | 6.44e-15 | 58 |
muscle cell | 7.72e-14 | 55 |
fibroblast | 5.90e-12 | 76 |
electrically responsive cell | 8.08e-11 | 61 |
electrically active cell | 8.08e-11 | 61 |
aortic smooth muscle cell | 3.61e-07 | 10 |