FFCP PHASE1:Hg19::chr21:47546004..47546019,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-384bp_to_uc002zic.1_5end | |association_with_transcript=-384bp_to_uc002zic.1_5end | ||
|cluster_id=chr21:47546004..47546019,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_26_at_COL6A2_5end | |description=CAGE_peak_26_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!8.18e-41!180;CL:0000057!4.76e-25!75;CL:0000680!8.68e-18!57;CL:0000056!8.68e-18!57;CL:0000355!8.68e-18!57;CL:0000393!1.65e-16!60;CL:0000211!1.65e-16!60;CL:0000187!2.13e-16!54;CL:0000183!9.11e-16!59;CL:0000048!1.41e-14!430;CL:0000723!1.23e-13!436;CL:0000034!9.63e-13!444;CL:0002620!2.07e-12!23;CL:0000192!4.52e-12!42;CL:0000514!4.52e-12!42;CL:0000359!2.56e-10!32;CL:0000499!3.09e-08!27;CL:0002371!3.22e-08!591;CL:0002570!2.10e-07!8 | |ontology_enrichment_celltype=CL:0000055!8.18e-41!180;CL:0000057!4.76e-25!75;CL:0000680!8.68e-18!57;CL:0000056!8.68e-18!57;CL:0000355!8.68e-18!57;CL:0000393!1.65e-16!60;CL:0000211!1.65e-16!60;CL:0000187!2.13e-16!54;CL:0000183!9.11e-16!59;CL:0000048!1.41e-14!430;CL:0000723!1.23e-13!436;CL:0000034!9.63e-13!444;CL:0002620!2.07e-12!23;CL:0000192!4.52e-12!42;CL:0000514!4.52e-12!42;CL:0000359!2.56e-10!32;CL:0000499!3.09e-08!27;CL:0002371!3.22e-08!591;CL:0002570!2.10e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.27e-11;23!CL:0002570;7.88e-11;8!CL:0000499;1.83e-09;28!CL:0000723;2.43e-08;61!CL:0000134;4.75e-08;55!CL:0000048;6.00e-08;58!CL:0000359;2.17e-07;32!CL:0000135;2.84e-07;3!CL:0000388;2.84e-07;3!CL:0002320;3.77e-07;188!CL:0000057;8.21e-07;73 | |ontology_enrichment_celltype_v019=CL:0002620;3.27e-11;23!CL:0002570;7.88e-11;8!CL:0000499;1.83e-09;28!CL:0000723;2.43e-08;61!CL:0000134;4.75e-08;55!CL:0000048;6.00e-08;58!CL:0000359;2.17e-07;32!CL:0000135;2.84e-07;3!CL:0000388;2.84e-07;3!CL:0002320;3.77e-07;188!CL:0000057;8.21e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.08e-17,76;CL:0000048,6.48e-15,427;CL:0000723,2.28e-14,433;CL:0000034,1.15e-13,441;CL:0002320,2.96e-12,361;CL:0002620,5.58e-11,23;CL:0002570,7.20e-11,8;CL:0000499,1.61e-09,28;CL:0000134,5.35e-09,354;CL:0000219,1.66e-07,386;CL:0000680,2.16e-07,58;CL:0000056,2.16e-07,58;CL:0000355,2.16e-07,58;CL:0000359,2.44e-07,32;CL:0000135,2.85e-07,3;CL:0000388,2.85e-07,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!1.84e-08!14 | |ontology_enrichment_disease=DOID:2394!1.84e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.06e-08;14!DOID:17;1.49e-08;5!DOID:450;1.49e-08;5!DOID:66;1.49e-08;5!DOID:423;1.49e-08;5!DOID:0080000;1.49e-08;5!DOID:11722;1.49e-08;5 | |ontology_enrichment_disease_v019=DOID:2394;1.06e-08;14!DOID:17;1.49e-08;5!DOID:450;1.49e-08;5!DOID:66;1.49e-08;5!DOID:423;1.49e-08;5!DOID:0080000;1.49e-08;5!DOID:11722;1.49e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:17,1.16e-08,5;DOID:450,1.16e-08,5;DOID:66,1.16e-08,5;DOID:423,1.16e-08,5;DOID:0080000,1.16e-08,5;DOID:11722,1.16e-08,5;DOID:2394,1.44e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.67e-22!83;UBERON:0002329!7.67e-22!83;UBERON:0003077!7.67e-22!83;UBERON:0003059!7.67e-22!83;UBERON:0007282!7.67e-22!83;UBERON:0009618!7.67e-22!83;UBERON:0007285!7.67e-22!83;UBERON:0004290!2.04e-20!70;UBERON:0000486!3.75e-17!82;UBERON:0002385!7.33e-17!63;UBERON:0001015!7.33e-17!63;UBERON:0000383!7.33e-17!63;UBERON:0001134!1.48e-16!61;UBERON:0002036!1.48e-16!61;UBERON:0003082!1.48e-16!61;UBERON:0005256!7.12e-14!143;UBERON:0002199!5.10e-11!45;UBERON:0002416!5.10e-11!45;UBERON:0003102!1.42e-09!95;UBERON:0002100!1.86e-09!216;UBERON:0004573!4.28e-09!33;UBERON:0004571!4.28e-09!33;UBERON:0002097!5.58e-09!40;UBERON:0004872!1.15e-08!84;UBERON:0000475!4.23e-08!365;UBERON:0001637!2.08e-07!42;UBERON:0003509!2.08e-07!42;UBERON:0004572!2.08e-07!42;UBERON:0000948!9.50e-07!24;UBERON:0005498!9.50e-07!24;UBERON:0004140!9.50e-07!24;UBERON:0009881!9.50e-07!24;UBERON:0004141!9.50e-07!24;UBERON:0003084!9.50e-07!24;UBERON:0007005!9.50e-07!24;UBERON:0004139!9.50e-07!24;UBERON:0004291!9.50e-07!24 | |ontology_enrichment_uberon=UBERON:0000914!7.67e-22!83;UBERON:0002329!7.67e-22!83;UBERON:0003077!7.67e-22!83;UBERON:0003059!7.67e-22!83;UBERON:0007282!7.67e-22!83;UBERON:0009618!7.67e-22!83;UBERON:0007285!7.67e-22!83;UBERON:0004290!2.04e-20!70;UBERON:0000486!3.75e-17!82;UBERON:0002385!7.33e-17!63;UBERON:0001015!7.33e-17!63;UBERON:0000383!7.33e-17!63;UBERON:0001134!1.48e-16!61;UBERON:0002036!1.48e-16!61;UBERON:0003082!1.48e-16!61;UBERON:0005256!7.12e-14!143;UBERON:0002199!5.10e-11!45;UBERON:0002416!5.10e-11!45;UBERON:0003102!1.42e-09!95;UBERON:0002100!1.86e-09!216;UBERON:0004573!4.28e-09!33;UBERON:0004571!4.28e-09!33;UBERON:0002097!5.58e-09!40;UBERON:0004872!1.15e-08!84;UBERON:0000475!4.23e-08!365;UBERON:0001637!2.08e-07!42;UBERON:0003509!2.08e-07!42;UBERON:0004572!2.08e-07!42;UBERON:0000948!9.50e-07!24;UBERON:0005498!9.50e-07!24;UBERON:0004140!9.50e-07!24;UBERON:0009881!9.50e-07!24;UBERON:0004141!9.50e-07!24;UBERON:0003084!9.50e-07!24;UBERON:0007005!9.50e-07!24;UBERON:0004139!9.50e-07!24;UBERON:0004291!9.50e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0002199;6.09e-11;46!UBERON:0002416;6.09e-11;46!UBERON:0004905;4.74e-10;8!UBERON:0000982;4.74e-10;8!UBERON:0004770;4.74e-10;8!UBERON:0001013;2.54e-09;14!UBERON:0002097;5.12e-09;41!UBERON:0003102;1.23e-08;50!UBERON:0011135;1.49e-08;5!UBERON:0002216;1.49e-08;5!UBERON:0011134;1.49e-08;5!UBERON:0002209;1.49e-08;5!UBERON:0002213;1.49e-08;5!UBERON:0007844;1.49e-08;5!UBERON:0011138;1.49e-08;5!UBERON:0001130;1.49e-08;5!UBERON:0001066;1.49e-08;5!UBERON:0001468;1.49e-08;5!UBERON:0007846;2.84e-07;3!UBERON:0000043;2.84e-07;3!UBERON:0007845;2.84e-07;3!UBERON:0002384;8.36e-07;198!UBERON:0004573;9.09e-07;33!UBERON:0004571;9.09e-07;33 | |ontology_enrichment_uberon_v019=UBERON:0002199;6.09e-11;46!UBERON:0002416;6.09e-11;46!UBERON:0004905;4.74e-10;8!UBERON:0000982;4.74e-10;8!UBERON:0004770;4.74e-10;8!UBERON:0001013;2.54e-09;14!UBERON:0002097;5.12e-09;41!UBERON:0003102;1.23e-08;50!UBERON:0011135;1.49e-08;5!UBERON:0002216;1.49e-08;5!UBERON:0011134;1.49e-08;5!UBERON:0002209;1.49e-08;5!UBERON:0002213;1.49e-08;5!UBERON:0007844;1.49e-08;5!UBERON:0011138;1.49e-08;5!UBERON:0001130;1.49e-08;5!UBERON:0001066;1.49e-08;5!UBERON:0001468;1.49e-08;5!UBERON:0007846;2.84e-07;3!UBERON:0000043;2.84e-07;3!UBERON:0007845;2.84e-07;3!UBERON:0002384;8.36e-07;198!UBERON:0004573;9.09e-07;33!UBERON:0004571;9.09e-07;33 | ||
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| ||
|short_description=p26@COL6A2 | |short_description=p26@COL6A2 | ||
}} | }} |
Latest revision as of 23:07, 18 September 2015
Short description: | p26@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -384bp_to_uc002zic.1_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.08e-17 | 76 |
multi fate stem cell | 6.48e-15 | 427 |
somatic stem cell | 2.28e-14 | 433 |
stem cell | 1.15e-13 | 441 |
connective tissue cell | 2.96e-12 | 361 |
skin fibroblast | 5.58e-11 | 23 |
mesenchymal stem cell of adipose | 7.20e-11 | 8 |
stromal cell | 1.61e-09 | 28 |
mesenchymal cell | 5.35e-09 | 354 |
motile cell | 1.66e-07 | 386 |
muscle precursor cell | 2.16e-07 | 58 |
myoblast | 2.16e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.16e-07 | 58 |
vascular associated smooth muscle cell | 2.44e-07 | 32 |
fibrocyte | 2.85e-07 | 3 |
tendon cell | 2.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.16e-08 | 5 |
myotonic disease | 1.16e-08 | 5 |
muscle tissue disease | 1.16e-08 | 5 |
myopathy | 1.16e-08 | 5 |
muscular disease | 1.16e-08 | 5 |
myotonic dystrophy | 1.16e-08 | 5 |
ovarian cancer | 1.44e-08 | 14 |