FFCP PHASE1:Hg19::chr19:47922750..47922795,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:47922750..47922795,-
|short_description=p1@MEIS3
|description=CAGE_peak_1_at_MEIS3_5end
|association_with_transcript=0bp_to_ENST00000331559,ENST0000055968...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=56917 | |EntrezGene=56917 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29537 | |HGNC=29537 | ||
|TSSclassifier=strong | |||
|UniProt=Q99687 | |UniProt=Q99687 | ||
|association_with_transcript=0bp_to_ENST00000331559,ENST00000559688,NM_001009813,NM_020160,uc002pgs.2,uc002pgt.2,uc002pgu.2,uc002pgv.2,uc010eld.2_5end | |||
|cluster_id=chr19:47922750..47922795,- | |||
|description=CAGE_peak_1_at_MEIS3_5end | |||
|id=chr19:47922750..47922795,- | |||
|ontology_enrichment_celltype=CL:0000055!4.23e-26!180;CL:0000057!1.64e-16!75;CL:0000393!3.21e-09!60;CL:0000211!3.21e-09!60;CL:0000192!4.90e-07!42;CL:0000514!4.90e-07!42;CL:0000183!5.60e-07!59;CL:0000187!5.97e-07!54;CL:0000680!7.89e-07!57;CL:0000056!7.89e-07!57;CL:0000355!7.89e-07!57 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.72e-15,76;CL:0000393,1.33e-08,61;CL:0000211,1.33e-08,61;CL:0000192,4.94e-07,43;CL:0000514,4.94e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.95e-15!365;UBERON:0001017!1.01e-12!82;UBERON:0004121!2.28e-12!169;UBERON:0005743!8.07e-12!86;UBERON:0002619!1.07e-11!22;UBERON:0000073!1.19e-11!94;UBERON:0001016!1.19e-11!94;UBERON:0000924!1.44e-11!173;UBERON:0006601!1.44e-11!173;UBERON:0000468!1.04e-10!659;UBERON:0000956!1.11e-10!25;UBERON:0000203!1.11e-10!25;UBERON:0001950!1.50e-10!20;UBERON:0001869!1.16e-09!32;UBERON:0001893!1.50e-09!34;UBERON:0000955!2.54e-09!69;UBERON:0006238!2.54e-09!69;UBERON:0002020!4.75e-09!34;UBERON:0003528!4.75e-09!34;UBERON:0002791!5.05e-09!33;UBERON:0000033!5.37e-09!123;UBERON:0000481!6.24e-09!347;UBERON:0002616!3.14e-08!59;UBERON:0000914!3.46e-08!83;UBERON:0002329!3.46e-08!83;UBERON:0003077!3.46e-08!83;UBERON:0003059!3.46e-08!83;UBERON:0007282!3.46e-08!83;UBERON:0009618!3.46e-08!83;UBERON:0007285!3.46e-08!83;UBERON:0000153!5.15e-08!129;UBERON:0007811!5.15e-08!129;UBERON:0002780!1.34e-07!41;UBERON:0001890!1.34e-07!41;UBERON:0006240!1.34e-07!41;UBERON:0003075!1.75e-07!86;UBERON:0007284!1.75e-07!86;UBERON:0001049!2.96e-07!57;UBERON:0005068!2.96e-07!57;UBERON:0006241!2.96e-07!57;UBERON:0007135!2.96e-07!57;UBERON:0003080!4.59e-07!42;UBERON:0000467!4.62e-07!625;UBERON:0000486!5.61e-07!82;UBERON:0000480!6.90e-07!626;UBERON:0004290!8.25e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;4.77e-14;22!UBERON:0001950;1.21e-12;20!UBERON:0000956;4.74e-12;25!UBERON:0000203;4.74e-12;25!UBERON:0001869;1.62e-08;32!UBERON:0001893;3.29e-08;34!UBERON:0002791;4.25e-08;32!UBERON:0003528;9.71e-08;34!UBERON:0002020;9.71e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,5.88e-14,22;UBERON:0001950,1.38e-12,20;UBERON:0001017,2.13e-12,81;UBERON:0001016,3.71e-12,89;UBERON:0000956,5.50e-12,25;UBERON:0000203,5.50e-12,25;UBERON:0001869,1.35e-09,32;UBERON:0001893,1.62e-09,34;UBERON:0010314,3.58e-09,132;UBERON:0004121,5.34e-09,171;UBERON:0000924,5.34e-09,171;UBERON:0006601,5.34e-09,171;UBERON:0002791,6.30e-09,32;UBERON:0000955,8.21e-09,68;UBERON:0006238,8.21e-09,68;UBERON:0003528,1.32e-08,34;UBERON:0002020,1.32e-08,34;UBERON:0002780,2.83e-07,41;UBERON:0001890,2.83e-07,41;UBERON:0003080,2.83e-07,41;UBERON:0006240,2.83e-07,41;UBERON:0011216,2.89e-07,223;UBERON:0000073,8.30e-07,53;UBERON:0002616,8.30e-07,53 | |||
|phase1_expression=8.72056220498672,5.56661362116556,5.49722175974288,4.00293193412522,5.81049422755474,4.36169262050184,0,2.52687949370732,3.65659879479774,0.491467873003018,0,0.873765488520689,0.791300934685361,0.123766352960047,0.994192127183747,2.6893005858071,3.01347264011988,2.92124036154949,4.39139518911456,1.72369481307503,0.204000691244253,1.56727360739044,1.43117993565528,0.136874425072884,0.753255837568817,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,1.34140171940727,5.75381528295886,2.1686349143074,4.51204119572301,4.05570253090306,0.795285947051099,4.37971383272372,0.0945348171640679,0,0.175669571386252,3.20898734969396,0,1.11235332835329,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,2.18047026071267,3.97577561356255,4.93858995491861,7.0176865831006,1.43418310374407,1.41867352879343,3.92474320099615,3.20246987189115,3.94668077467456,1.8672662123986,0.404132016209064,0.326923806226917,2.72443369760877,2.88087962239999,0.468642863667593,2.49728061464256,2.85235910772225,3.58676833324323,0.587172493218824,0.161872944368132,0.280901613404497,1.22492502752936,1.22834317311768,3.30642499762449,4.75201142912821,6.67620709052104,1.82032272387605,2.15585442544872,1.0100166837244,1.37630371859161,1.93944880838928,4.82875382968922,7.35570709917647,4.35690370829131,1.36118619792025,1.4351170855109,4.69826255400848,4.23863802319124,2.10063767259082,1.44273540933814,2.31876486041066,4.09457083929498,5.73839529620305,3.60516919096435,4.29137416214995,4.23429533754577,3.87950536365149,4.26011511019937,2.72030665214629,2.7129694769678,0,1.36373060295417,0.286804595389004,2.92736894711029,2.51806559810822,2.90484857173796,3.31715376049185,3.5324919122588,1.82488679537915,0,3.21620469096443,2.76269842704961,6.96551892047969,2.16563844500876,0.354920400119532,0.337169380156203,0.482022059766964,0.330881918197182,0.217879444092406,0,0.269662616320329,0,0,0,0,2.4694440679884,7.3504355692771,0,0,1.18157981336281,0,1.47586126251736,1.88724591328378,1.31700342490351,0,0.301586917234893,0.370353780634118,0.977424915930974,3.11980435583874,0,1.04337364477569,2.81780866165972,0,0,0,3.1608175918371,1.71697232418975,0.246217006087397,0,0,0,1.84780341018745,0.425325291727159,0.53735113621709,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,3.11139682031628,4.20187268114105,5.86087236050235,1.71072446022705,1.85089486865982,1.8020583470635,2.28661146104463,0.560655421726804,0,0.51336800074665,3.87815147273333,32.1890801266694,0.845302752556,5.05282421511254,6.24044621468197,0.257207374262142,0,0.532844358032199,3.43147184779554,8.13932408087165,0,1.95441710576241,3.55391948742546,0,6.63166629531089,12.2014684204041,7.39800134747222,0,0,0,0.958499421966331,1.14861935834114,0,2.02693829334611,0.205476322550383,0.716243852959582,0,0,0.215627574859517,0,3.55732473911449,2.60279707715243,7.73288812777695,11.7261385734044,8.29320377149112,0,0,0,2.69921281782108,0.500170521059677,0.813795071099207,4.15941723061614,2.85486382075459,2.68094105557689,4.21709093973768,0.300946099727719,0,4.1389228517002,0,0,1.99832313276591,2.93701736194111,4.11772108573027,0,0,0,2.12189300012382,6.65741758041988,7.55975733324201,5.70647957983187,8.13348458426731,8.41980283299221,6.91951405980785,9.21073048320066,6.75586468803151,2.96836132889982,0.925258162815933,1.77561725313127,0.9033987161519,4.15403543346897,0.697262270759755,2.90062679019893,4.41114234667227,0.460404944679482,2.41110341145674,2.73136752010076,3.93373244878272,0,0.308061348417659,0,0,0.422206515571503,0,0,0.431831832204279,0,0.541892875087706,1.00337954770971,0,0,0.447749509444357,0,0,0,0,0.650756789328606,0.515205058238611,0,0,0.574265537996172,0.650060246036521,6.42735719376638,0.580024309752732,0.308097234229289,0.307007349452259,0.551346289938122,2.0409846524972,1.59518363305651,0.767039646744908,2.1367688555217,0.826424576804891,0.768760269460425,1.65896526242959,0.6069466851333,3.253918845081,3.1481234683064,2.0911118104818,0.308033580176089,3.72614221221915,0,2.40921484835096,1.43124886741991,1.86079184679834,0.632758849437452,4.95638504201945,1.02359116524534,1.28381696410176,2.54562598340749,3.92474320099615,1.2591072030832,2.74537029736055,2.35624804691373,4.85237955775958,0,0.842516912477962,1.95053495635836,1.46228093778771,1.05650146756755,1.77449884830381,2.82810863907426,5.65040583101214,6.06501877900737,1.99031692572366,0.438450885253763,2.89387767133344,1.31178950409327,1.82619339266434,0.92947049429925,1.12678241012897,1.43411352204052,4.32295780457733,2.1400263088875,3.54761064070598,6.12212142363226,1.31717957183961,2.276839042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|phase1_expression=8.72056220498672,5.56661362116556,5.49722175974288,4.00293193412522,5.81049422755474,4.36169262050184,0,2.52687949370732,3.65659879479774,0.491467873003018,0,0.873765488520689,0.791300934685361,0.123766352960047,0.994192127183747,2.6893005858071,3.01347264011988,2.92124036154949,4.39139518911456,1.72369481307503,0.204000691244253,1.56727360739044,1.43117993565528,0.136874425072884,0.753255837568817,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,2.43806866313962,1.34140171940727,5.75381528295886,2.1686349143074,4.51204119572301,4.05570253090306,0.795285947051099,4.37971383272372,0.0945348171640679,0,0.175669571386252,3.20898734969396,0,1.11235332835329,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,2.18047026071267,3.97577561356255,4.93858995491861,7.0176865831006,1.43418310374407,1.41867352879343,3.92474320099615,3.20246987189115,3.94668077467456,1.8672662123986,0.404132016209064,0.326923806226917,2.72443369760877,2.88087962239999,0.468642863667593,2.49728061464256,2.85235910772225,3.58676833324323,0.587172493218824,0.161872944368132,0.280901613404497,1.22492502752936,1.22834317311768,3.30642499762449,4.75201142912821,6.67620709052104,1.82032272387605,2.15585442544872,1.0100166837244,1.37630371859161,1.93944880838928,4.82875382968922,7.35570709917647,4.35690370829131,1.36118619792025,1.4351170855109,4.69826255400848,4.23863802319124,2.10063767259082,1.44273540933814,2.31876486041066,4.09457083929498,5.73839529620305,3.60516919096435,4.29137416214995,4.23429533754577,3.87950536365149,4.26011511019937,2.72030665214629,2.7129694769678,0,1.36373060295417,0.286804595389004,2.92736894711029,2.51806559810822,2.90484857173796,3.31715376049185,3.5324919122588,1.82488679537915,0,3.21620469096443,2.76269842704961,6.96551892047969,2.16563844500876,0.354920400119532,0.337169380156203,0.482022059766964,0.330881918197182,0.217879444092406,0,0.269662616320329,0,0,0,0,2.4694440679884,7.3504355692771,0,0,1.18157981336281,0,1.47586126251736,1.88724591328378,1.31700342490351,0,0.301586917234893,0.370353780634118,0.977424915930974,3.11980435583874,0,1.04337364477569,2.81780866165972,0,0,0,3.1608175918371,1.71697232418975,0.246217006087397,0,0,0,1.84780341018745,0.425325291727159,0.53735113621709,0.581267877027924,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,3.11139682031628,4.20187268114105,5.86087236050235,1.71072446022705,1.85089486865982,1.8020583470635,2.28661146104463,0.560655421726804,0,0.51336800074665,3.87815147273333,32.1890801266694,0.845302752556,5.05282421511254,6.24044621468197,0.257207374262142,0,0.532844358032199,3.43147184779554,8.13932408087165,0,1.95441710576241,3.55391948742546,0,6.63166629531089,12.2014684204041,7.39800134747222,0,0,0,0.958499421966331,1.14861935834114,0,2.02693829334611,0.205476322550383,0.716243852959582,0,0,0.215627574859517,0,3.55732473911449,2.60279707715243,7.73288812777695,11.7261385734044,8.29320377149112,0,0,0,2.69921281782108,0.500170521059677,0.813795071099207,4.15941723061614,2.85486382075459,2.68094105557689,4.21709093973768,0.300946099727719,0,4.1389228517002,0,0,1.99832313276591,2.93701736194111,4.11772108573027,0,0,0,2.12189300012382,6.65741758041988,7.55975733324201,5.70647957983187,8.13348458426731,8.41980283299221,6.91951405980785,9.21073048320066,6.75586468803151,2.96836132889982,0.925258162815933,1.77561725313127,0.9033987161519,4.15403543346897,0.697262270759755,2.90062679019893,4.41114234667227,0.460404944679482,2.41110341145674,2.73136752010076,3.93373244878272,0,0.308061348417659,0,0,0.422206515571503,0,0,0.431831832204279,0,0.541892875087706,1.00337954770971,0,0,0.447749509444357,0,0,0,0,0.650756789328606,0.515205058238611,0,0,0.574265537996172,0.650060246036521,6.42735719376638,0.580024309752732,0.308097234229289,0.307007349452259,0.551346289938122,2.0409846524972,1.59518363305651,0.767039646744908,2.1367688555217,0.826424576804891,0.768760269460425,1.65896526242959,0.6069466851333,3.253918845081,3.1481234683064,2.0911118104818,0.308033580176089,3.72614221221915,0,2.40921484835096,1.43124886741991,1.86079184679834,0.632758849437452,4.95638504201945,1.02359116524534,1.28381696410176,2.54562598340749,3.92474320099615,1.2591072030832,2.74537029736055,2.35624804691373,4.85237955775958,0,0.842516912477962,1.95053495635836,1.46228093778771,1.05650146756755,1.77449884830381,2.82810863907426,5.65040583101214,6.06501877900737,1.99031692572366,0.438450885253763,2.89387767133344,1.31178950409327,1.82619339266434,0.92947049429925,1.12678241012897,1.43411352204052,4.32295780457733,2.1400263088875,3.54761064070598,6.12212142363226,1.31717957183961,2.276839042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| ||
|short_description=p1@MEIS3 | |||
}} | }} |
Latest revision as of 23:52, 18 September 2015
Short description: | p1@MEIS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MEIS3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000331559, ENST00000559688, NM_001009813, NM_020160, uc002pgs.2, uc002pgt.2, uc002pgu.2, uc002pgv.2, uc010eld.2_5end |
EntrezGene: | MEIS3 |
HGNC: | 29537 |
UniProt: | Q99687 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.72e-15 | 76 |
electrically responsive cell | 1.33e-08 | 61 |
electrically active cell | 1.33e-08 | 61 |
smooth muscle cell | 4.94e-07 | 43 |
smooth muscle myoblast | 4.94e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 5.88e-14 | 22 |
neocortex | 1.38e-12 | 20 |
central nervous system | 2.13e-12 | 81 |
nervous system | 3.71e-12 | 89 |
cerebral cortex | 5.50e-12 | 25 |
pallium | 5.50e-12 | 25 |
cerebral hemisphere | 1.35e-09 | 32 |
telencephalon | 1.62e-09 | 34 |
structure with developmental contribution from neural crest | 3.58e-09 | 132 |
ectoderm-derived structure | 5.34e-09 | 171 |
ectoderm | 5.34e-09 | 171 |
presumptive ectoderm | 5.34e-09 | 171 |
regional part of telencephalon | 6.30e-09 | 32 |
brain | 8.21e-09 | 68 |
future brain | 8.21e-09 | 68 |
brain grey matter | 1.32e-08 | 34 |
gray matter | 1.32e-08 | 34 |
regional part of forebrain | 2.83e-07 | 41 |
forebrain | 2.83e-07 | 41 |
anterior neural tube | 2.83e-07 | 41 |
future forebrain | 2.83e-07 | 41 |
organ system subdivision | 2.89e-07 | 223 |
regional part of nervous system | 8.30e-07 | 53 |
regional part of brain | 8.30e-07 | 53 |