FFCP PHASE1:Hg19::chr19:48867171..48867204,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55260 | |EntrezGene=55260 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25603 | |HGNC=25603 | ||
|TSSclassifier=strong | |||
|UniProt=Q96AN5,B4DMT0,B4DPF8,F5GZQ8 | |UniProt=Q96AN5,B4DMT0,B4DPF8,F5GZQ8 | ||
|association_with_transcript=0bp_to_ENST00000293261,ENST00000377431,ENST00000435956,ENST00000436660,ENST00000541566,NM_018273,uc002piw.1,uc002pix.1,uc002piy.1,uc010elw.1,uc010xzn.1,uc010xzo.1,uc010xzp.1,uc010xzq.1_5end | |association_with_transcript=0bp_to_ENST00000293261,ENST00000377431,ENST00000435956,ENST00000436660,ENST00000541566,NM_018273,uc002piw.1,uc002pix.1,uc002piy.1,uc010elw.1,uc010xzn.1,uc010xzo.1,uc010xzp.1,uc010xzq.1_5end | ||
|cluster_id=chr19:48867171..48867204,- | |||
|coexpression_cluster_id=C20 | |coexpression_cluster_id=C20 | ||
|description=CAGE_peak_1_at_TMEM143_5end | |description=CAGE_peak_1_at_TMEM143_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.34e-22!115;UBERON:0001049!1.70e-09!57;UBERON:0005068!1.70e-09!57;UBERON:0006241!1.70e-09!57;UBERON:0007135!1.70e-09!57;UBERON:0002616!5.69e-09!59;UBERON:0003075!1.19e-08!86;UBERON:0007284!1.19e-08!86;UBERON:0002346!1.51e-08!90;UBERON:0003080!1.40e-07!42;UBERON:0000955!1.71e-07!69;UBERON:0006238!1.71e-07!69;UBERON:0002780!1.89e-07!41;UBERON:0001890!1.89e-07!41;UBERON:0006240!1.89e-07!41;UBERON:0001893!2.32e-07!34;UBERON:0002791!2.92e-07!33;UBERON:0002020!3.39e-07!34;UBERON:0003528!3.39e-07!34;UBERON:0000064!7.18e-07!219;UBERON:0003056!7.80e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!3.34e-22!115;UBERON:0001049!1.70e-09!57;UBERON:0005068!1.70e-09!57;UBERON:0006241!1.70e-09!57;UBERON:0007135!1.70e-09!57;UBERON:0002616!5.69e-09!59;UBERON:0003075!1.19e-08!86;UBERON:0007284!1.19e-08!86;UBERON:0002346!1.51e-08!90;UBERON:0003080!1.40e-07!42;UBERON:0000955!1.71e-07!69;UBERON:0006238!1.71e-07!69;UBERON:0002780!1.89e-07!41;UBERON:0001890!1.89e-07!41;UBERON:0006240!1.89e-07!41;UBERON:0001893!2.32e-07!34;UBERON:0002791!2.92e-07!33;UBERON:0002020!3.39e-07!34;UBERON:0003528!3.39e-07!34;UBERON:0000064!7.18e-07!219;UBERON:0003056!7.80e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;9.68e-07;34 | |ontology_enrichment_uberon_v019=UBERON:0001893;9.68e-07;34 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.88e-22,114;UBERON:0000073,1.00e-09,53;UBERON:0002616,1.00e-09,53;UBERON:0003075,2.25e-09,82;UBERON:0007284,2.25e-09,82;UBERON:0001049,2.32e-09,56;UBERON:0005068,2.32e-09,56;UBERON:0006241,2.32e-09,56;UBERON:0007135,2.32e-09,56;UBERON:0002346,3.21e-09,86;UBERON:0002780,1.89e-07,41;UBERON:0001890,1.89e-07,41;UBERON:0003080,1.89e-07,41;UBERON:0006240,1.89e-07,41;UBERON:0001893,2.31e-07,34;UBERON:0000955,2.31e-07,68;UBERON:0006238,2.31e-07,68;UBERON:0003528,3.38e-07,34;UBERON:0002020,3.38e-07,34;UBERON:0003056,5.28e-07,61;UBERON:0002791,6.20e-07,32 | |||
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| ||
|short_description=p1@TMEM143 | |short_description=p1@TMEM143 | ||
}} | }} |
Latest revision as of 01:56, 19 September 2015
Short description: | p1@TMEM143 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM143_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000293261, ENST00000377431, ENST00000435956, ENST00000436660, ENST00000541566, NM_018273, uc002piw.1, uc002pix.1, uc002piy.1, uc010elw.1, uc010xzn.1, uc010xzo.1, uc010xzp.1, uc010xzq.1_5end |
EntrezGene: | TMEM143 |
HGNC: | 25603 |
UniProt: | Q96AN5B4DMT0B4DPF8F5GZQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.88e-22 | 114 |
regional part of nervous system | 1.00e-09 | 53 |
regional part of brain | 1.00e-09 | 53 |
neural plate | 2.25e-09 | 82 |
presumptive neural plate | 2.25e-09 | 82 |
neural tube | 2.32e-09 | 56 |
neural rod | 2.32e-09 | 56 |
future spinal cord | 2.32e-09 | 56 |
neural keel | 2.32e-09 | 56 |
neurectoderm | 3.21e-09 | 86 |
regional part of forebrain | 1.89e-07 | 41 |
forebrain | 1.89e-07 | 41 |
anterior neural tube | 1.89e-07 | 41 |
future forebrain | 1.89e-07 | 41 |
telencephalon | 2.31e-07 | 34 |
brain | 2.31e-07 | 68 |
future brain | 2.31e-07 | 68 |
brain grey matter | 3.38e-07 | 34 |
gray matter | 3.38e-07 | 34 |
pre-chordal neural plate | 5.28e-07 | 61 |
regional part of telencephalon | 6.20e-07 | 32 |