FFCP PHASE1:Hg19::chr7:5569038..5569060,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=60 | |EntrezGene=60 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=132 | |HGNC=132 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_uc003sor.3_5end | |association_with_transcript=-7bp_to_uc003sor.3_5end | ||
|cluster_id=chr7:5569038..5569060,- | |||
|description=CAGE_peak_20_at_ACTB_5end | |description=CAGE_peak_20_at_ACTB_5end | ||
|id=chr7:5569038..5569060,- | |id=chr7:5569038..5569060,- | ||
|ontology_enrichment_celltype=CL:0002371!7.41e-18!591;CL:0000144!6.93e-17!625;CL:0000548!1.41e-16!679;CL:0000004!1.41e-16!679;CL:0000255!1.41e-16!679;CL:0000192!1.71e-16!42;CL:0000514!1.71e-16!42;CL:0000359!2.42e-16!32;CL:0000012!5.21e-16!682;CL:0000183!5.68e-16!59;CL:0000222!1.33e-14!119;CL:0000003!1.83e-14!722;CL:0000680!7.35e-14!57;CL:0000056!7.35e-14!57;CL:0000355!7.35e-14!57;CL:0000187!1.39e-13!54;CL:0000055!1.56e-13!180;CL:0000393!4.32e-12!60;CL:0000211!4.32e-12!60;CL:0000220!3.41e-08!246;CL:0002321!4.75e-08!248;CL:0000723!8.01e-08!436;CL:0000048!8.72e-08!430;CL:0000034!2.79e-07!444 | |ontology_enrichment_celltype=CL:0002371!7.41e-18!591;CL:0000144!6.93e-17!625;CL:0000548!1.41e-16!679;CL:0000004!1.41e-16!679;CL:0000255!1.41e-16!679;CL:0000192!1.71e-16!42;CL:0000514!1.71e-16!42;CL:0000359!2.42e-16!32;CL:0000012!5.21e-16!682;CL:0000183!5.68e-16!59;CL:0000222!1.33e-14!119;CL:0000003!1.83e-14!722;CL:0000680!7.35e-14!57;CL:0000056!7.35e-14!57;CL:0000355!7.35e-14!57;CL:0000187!1.39e-13!54;CL:0000055!1.56e-13!180;CL:0000393!4.32e-12!60;CL:0000211!4.32e-12!60;CL:0000220!3.41e-08!246;CL:0002321!4.75e-08!248;CL:0000723!8.01e-08!436;CL:0000048!8.72e-08!430;CL:0000034!2.79e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000359;1.51e-18;32!CL:0000192;2.22e-10;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.67e-19,32;CL:0000192,2.12e-14,43;CL:0000514,2.12e-14,43;CL:0000222,2.93e-13,121;CL:0000187,3.95e-10,55;CL:0000680,4.55e-10,58;CL:0000056,4.55e-10,58;CL:0000355,4.55e-10,58;CL:0000393,2.76e-08,61;CL:0000211,2.76e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;2.22e-10;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!6.38e-16!69;UBERON:0001637!7.61e-16!42;UBERON:0003509!7.61e-16!42;UBERON:0004572!7.61e-16!42;UBERON:0001981!1.12e-15!60;UBERON:0007500!1.12e-15!60;UBERON:0004537!1.12e-15!60;UBERON:0006965!1.12e-15!60;UBERON:0002049!2.13e-15!79;UBERON:0007798!2.13e-15!79;UBERON:0004535!4.65e-13!110;UBERON:0003914!1.75e-12!118;UBERON:0004573!2.39e-12!33;UBERON:0004571!2.39e-12!33;UBERON:0004872!2.46e-12!84;UBERON:0001009!5.56e-12!113;UBERON:0004290!1.36e-11!70;UBERON:0001134!1.55e-11!61;UBERON:0002036!1.55e-11!61;UBERON:0003082!1.55e-11!61;UBERON:0002385!1.24e-10!63;UBERON:0001015!1.24e-10!63;UBERON:0000383!1.24e-10!63;UBERON:0000486!1.58e-10!82;UBERON:0005256!2.29e-10!143;UBERON:0002100!3.77e-10!216;UBERON:0000490!9.60e-10!138;UBERON:0000914!1.69e-09!83;UBERON:0002329!1.69e-09!83;UBERON:0003077!1.69e-09!83;UBERON:0003059!1.69e-09!83;UBERON:0007282!1.69e-09!83;UBERON:0009618!1.69e-09!83;UBERON:0007285!1.69e-09!83;UBERON:0003081!7.36e-07!216;UBERON:0000947!7.45e-07!21;UBERON:0010191!7.45e-07!21 | |ontology_enrichment_uberon=UBERON:0000055!6.38e-16!69;UBERON:0001637!7.61e-16!42;UBERON:0003509!7.61e-16!42;UBERON:0004572!7.61e-16!42;UBERON:0001981!1.12e-15!60;UBERON:0007500!1.12e-15!60;UBERON:0004537!1.12e-15!60;UBERON:0006965!1.12e-15!60;UBERON:0002049!2.13e-15!79;UBERON:0007798!2.13e-15!79;UBERON:0004535!4.65e-13!110;UBERON:0003914!1.75e-12!118;UBERON:0004573!2.39e-12!33;UBERON:0004571!2.39e-12!33;UBERON:0004872!2.46e-12!84;UBERON:0001009!5.56e-12!113;UBERON:0004290!1.36e-11!70;UBERON:0001134!1.55e-11!61;UBERON:0002036!1.55e-11!61;UBERON:0003082!1.55e-11!61;UBERON:0002385!1.24e-10!63;UBERON:0001015!1.24e-10!63;UBERON:0000383!1.24e-10!63;UBERON:0000486!1.58e-10!82;UBERON:0005256!2.29e-10!143;UBERON:0002100!3.77e-10!216;UBERON:0000490!9.60e-10!138;UBERON:0000914!1.69e-09!83;UBERON:0002329!1.69e-09!83;UBERON:0003077!1.69e-09!83;UBERON:0003059!1.69e-09!83;UBERON:0007282!1.69e-09!83;UBERON:0009618!1.69e-09!83;UBERON:0007285!1.69e-09!83;UBERON:0003081!7.36e-07!216;UBERON:0000947!7.45e-07!21;UBERON:0010191!7.45e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.39e-12;42!UBERON:0003509;1.39e-12;42!UBERON:0004572;1.39e-12;42!UBERON:0004573;2.34e-11;33!UBERON:0004571;2.34e-11;33!UBERON:0007500;3.05e-11;56!UBERON:0001981;3.05e-11;56!UBERON:0004537;3.05e-11;56!UBERON:0003914;1.73e-10;74!UBERON:0000025;4.17e-07;93!UBERON:0002049;5.58e-07;75!UBERON:0007798;5.58e-07;75!UBERON:0000055;6.35e-07;65 | |||
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| ||
|short_description=p20@ACTB | |short_description=p20@ACTB | ||
}} | }} |
Latest revision as of 02:09, 19 September 2015
Short description: | p20@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_ACTB_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_uc003sor.3_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.67e-19 | 32 |
smooth muscle cell | 2.12e-14 | 43 |
smooth muscle myoblast | 2.12e-14 | 43 |
mesodermal cell | 2.93e-13 | 121 |
muscle cell | 3.95e-10 | 55 |
muscle precursor cell | 4.55e-10 | 58 |
myoblast | 4.55e-10 | 58 |
multi-potent skeletal muscle stem cell | 4.55e-10 | 58 |
electrically responsive cell | 2.76e-08 | 61 |
electrically active cell | 2.76e-08 | 61 |