FFCP PHASE1:Hg19::chr14:21945033..21945056,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84932 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20246 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WUD1 | |||
|association_with_transcript=36bp_to_ENST00000304034_5end | |||
|cluster_id=chr14:21945033..21945056,- | |||
|description=CAGE_peak_3_at_RAB2B_5end | |||
|id=chr14:21945033..21945056,- | |||
|ontology_enrichment_celltype=CL:0000542!1.33e-14!53;CL:0000051!1.33e-14!53;CL:0000838!3.49e-14!52;CL:0000791!4.97e-09!18;CL:0000789!4.97e-09!18;CL:0002420!4.97e-09!18;CL:0002419!4.97e-09!18;CL:0000790!4.97e-09!18;CL:0000084!1.29e-07!25;CL:0000827!1.29e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.03e-09;53!CL:0000791;2.60e-09;18!CL:0000789;2.60e-09;18!CL:0002419;2.60e-09;18!CL:0000084;1.02e-07;25!CL:0000945;4.83e-07;24!CL:0000236;5.80e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,9.13e-15,53;CL:0000051,9.13e-15,53;CL:0000838,2.42e-14,52;CL:0000791,4.00e-09,18;CL:0000789,4.00e-09,18;CL:0002420,4.00e-09,18;CL:0002419,4.00e-09,18;CL:0000790,4.00e-09,18;CL:0000084,1.08e-07,25;CL:0000827,1.08e-07,25;CL:0000738,4.07e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;2.03e-09;53!CL:0000790;2.60e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.80e-16!57;UBERON:0005068!7.80e-16!57;UBERON:0006241!7.80e-16!57;UBERON:0007135!7.80e-16!57;UBERON:0001017!1.28e-15!82;UBERON:0005743!4.71e-15!86;UBERON:0007023!5.58e-15!115;UBERON:0000073!1.97e-13!94;UBERON:0001016!1.97e-13!94;UBERON:0002616!2.02e-13!59;UBERON:0002780!3.93e-13!41;UBERON:0001890!3.93e-13!41;UBERON:0006240!3.93e-13!41;UBERON:0003080!6.82e-13!42;UBERON:0000955!2.26e-12!69;UBERON:0006238!2.26e-12!69;UBERON:0001893!1.55e-10!34;UBERON:0002791!4.00e-10!33;UBERON:0002020!4.12e-10!34;UBERON:0003528!4.12e-10!34;UBERON:0003075!4.37e-10!86;UBERON:0007284!4.37e-10!86;UBERON:0002346!4.54e-10!90;UBERON:0001869!1.57e-09!32;UBERON:0003056!5.86e-09!61;UBERON:0002619!1.27e-07!22;UBERON:0001950!1.79e-07!20;UBERON:0000956!1.82e-07!25;UBERON:0000203!1.82e-07!25;UBERON:0000153!4.46e-07!129;UBERON:0007811!4.46e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.25e-09;41!UBERON:0001890;1.25e-09;41!UBERON:0000073;1.52e-09;53!UBERON:0002616;1.52e-09;53!UBERON:0001893;5.60e-09;34!UBERON:0003528;8.77e-09;34!UBERON:0002020;8.77e-09;34!UBERON:0002791;1.32e-08;32!UBERON:0001869;1.80e-08;32!UBERON:0001950;2.26e-07;20!UBERON:0002619;2.30e-07;22!UBERON:0000956;2.88e-07;25!UBERON:0000203;2.88e-07;25!UBERON:0001017;7.31e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.15e-16,56;UBERON:0005068,2.15e-16,56;UBERON:0006241,2.15e-16,56;UBERON:0007135,2.15e-16,56;UBERON:0001017,5.08e-16,81;UBERON:0000073,2.26e-15,53;UBERON:0002616,2.26e-15,53;UBERON:0007023,2.66e-15,114;UBERON:0001016,2.51e-14,89;UBERON:0002780,2.81e-13,41;UBERON:0001890,2.81e-13,41;UBERON:0003080,2.81e-13,41;UBERON:0006240,2.81e-13,41;UBERON:0000955,1.02e-12,68;UBERON:0006238,1.02e-12,68;UBERON:0003075,3.46e-11,82;UBERON:0007284,3.46e-11,82;UBERON:0002346,3.89e-11,86;UBERON:0001893,1.20e-10,34;UBERON:0003528,3.22e-10,34;UBERON:0002020,3.22e-10,34;UBERON:0002791,1.21e-09,32;UBERON:0001869,1.24e-09,32;UBERON:0003056,9.84e-09,61;UBERON:0002619,1.06e-07,22;UBERON:0001950,1.51e-07,20;UBERON:0000956,1.53e-07,25;UBERON:0000203,1.53e-07,25;UBERON:0010371,9.14e-07,104 | |||
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| |||
|short_description=p3@RAB2B | |||
}} |
Latest revision as of 03:01, 19 September 2015
Short description: | p3@RAB2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB2B_5end |
Coexpression cluster: | NA |
Association with transcript: | 36bp_to_ENST00000304034_5end |
EntrezGene: | RAB2B |
HGNC: | 20246 |
UniProt: | Q8WUD1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 9.13e-15 | 53 |
common lymphoid progenitor | 9.13e-15 | 53 |
lymphoid lineage restricted progenitor cell | 2.42e-14 | 52 |
mature alpha-beta T cell | 4.00e-09 | 18 |
alpha-beta T cell | 4.00e-09 | 18 |
immature T cell | 4.00e-09 | 18 |
mature T cell | 4.00e-09 | 18 |
immature alpha-beta T cell | 4.00e-09 | 18 |
T cell | 1.08e-07 | 25 |
pro-T cell | 1.08e-07 | 25 |
leukocyte | 4.07e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.15e-16 | 56 |
neural rod | 2.15e-16 | 56 |
future spinal cord | 2.15e-16 | 56 |
neural keel | 2.15e-16 | 56 |
central nervous system | 5.08e-16 | 81 |
regional part of nervous system | 2.26e-15 | 53 |
regional part of brain | 2.26e-15 | 53 |
adult organism | 2.66e-15 | 114 |
nervous system | 2.51e-14 | 89 |
regional part of forebrain | 2.81e-13 | 41 |
forebrain | 2.81e-13 | 41 |
anterior neural tube | 2.81e-13 | 41 |
future forebrain | 2.81e-13 | 41 |
brain | 1.02e-12 | 68 |
future brain | 1.02e-12 | 68 |
neural plate | 3.46e-11 | 82 |
presumptive neural plate | 3.46e-11 | 82 |
neurectoderm | 3.89e-11 | 86 |
telencephalon | 1.20e-10 | 34 |
brain grey matter | 3.22e-10 | 34 |
gray matter | 3.22e-10 | 34 |
regional part of telencephalon | 1.21e-09 | 32 |
cerebral hemisphere | 1.24e-09 | 32 |
pre-chordal neural plate | 9.84e-09 | 61 |
regional part of cerebral cortex | 1.06e-07 | 22 |
neocortex | 1.51e-07 | 20 |
cerebral cortex | 1.53e-07 | 25 |
pallium | 1.53e-07 | 25 |
ecto-epithelium | 9.14e-07 | 104 |