FFCP PHASE1:Hg19::chr15:78913353..78913365,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1957 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-31bp_to_uc002bea.2,uc002beb.2,uc002bec.2_5end | |||
|cluster_id=chr15:78913353..78913365,- | |||
|coexpression_cluster_id=C1753 | |||
|description=CAGE_peak_3_at_CHRNA3_5end | |||
|id=chr15:78913353..78913365,- | |||
|ontology_enrichment_celltype=CL:0002322!5.28e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002321;1.81e-10;15!CL:0000123;2.07e-10;2!CL:0000242;2.07e-10;2!CL:0000333;1.96e-09;5!CL:0002322;2.89e-08;5!CL:0002586;6.65e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.93e-10,2;CL:0002322,3.60e-08,5;CL:0002586,6.75e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.22e-07;3!UBERON:0006215;3.87e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;6.35e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,6.35e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0003075!9.52e-30!86;UBERON:0007284!9.52e-30!86;UBERON:0002346!1.03e-27!90;UBERON:0000073!9.87e-25!94;UBERON:0001016!9.87e-25!94;UBERON:0005743!4.23e-24!86;UBERON:0007023!4.71e-23!115;UBERON:0001017!3.32e-20!82;UBERON:0001049!4.33e-20!57;UBERON:0005068!4.33e-20!57;UBERON:0006241!4.33e-20!57;UBERON:0007135!4.33e-20!57;UBERON:0003056!1.71e-18!61;UBERON:0004121!2.31e-17!169;UBERON:0000924!1.50e-16!173;UBERON:0006601!1.50e-16!173;UBERON:0002616!1.82e-16!59;UBERON:0000955!7.58e-16!69;UBERON:0006238!7.58e-16!69;UBERON:0002780!3.09e-14!41;UBERON:0001890!3.09e-14!41;UBERON:0006240!3.09e-14!41;UBERON:0000153!4.86e-14!129;UBERON:0007811!4.86e-14!129;UBERON:0003080!9.83e-14!42;UBERON:0000033!1.08e-12!123;UBERON:0001894!7.43e-11!7;UBERON:0006222!7.43e-11!7;UBERON:0000966!1.26e-08!5;UBERON:0005388!1.26e-08!5;UBERON:0001802!1.26e-08!5;UBERON:0002020!5.34e-08!34;UBERON:0003528!5.34e-08!34;UBERON:0001893!6.66e-08!34;UBERON:0003076!9.38e-08!15;UBERON:0003057!9.38e-08!15;UBERON:0001869!1.48e-07!32;UBERON:0002420!1.60e-07!9;UBERON:0007245!1.60e-07!9;UBERON:0010009!1.60e-07!9;UBERON:0010011!1.60e-07!9;UBERON:0000454!1.60e-07!9;UBERON:0003296!2.28e-07!4;UBERON:0010133!2.28e-07!4;UBERON:0002791!2.49e-07!33;UBERON:0007625!2.59e-07!11;UBERON:0002308!3.62e-07!9;UBERON:0000125!3.62e-07!9;UBERON:0000970!4.87e-07!20;UBERON:0000063!9.05e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;3.39e-16;7!UBERON:0000966;6.03e-15;5!UBERON:0005388;6.03e-15;5!UBERON:0001802;6.03e-15;5!UBERON:0003296;3.90e-11;4!UBERON:0010133;3.90e-11;4!UBERON:0002784;3.90e-11;4!UBERON:0001905;8.47e-11;2!UBERON:0002757;8.47e-11;2!UBERON:0010134;8.47e-11;2!UBERON:0005408;8.47e-11;2!UBERON:0001899;8.47e-11;2!UBERON:0002370;1.53e-10;2!UBERON:0005058;1.53e-10;2!UBERON:0009113;1.53e-10;2!UBERON:0000013;1.96e-09;5!UBERON:0002410;1.96e-09;5!UBERON:0001781;6.65e-07;3!UBERON:0001782;6.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001894,3.29e-16,7;UBERON:0006222,3.29e-16,7;UBERON:0000966,1.96e-12,6;UBERON:0005388,1.96e-12,6;UBERON:0001802,1.96e-12,6;UBERON:0002784,3.41e-11,4;UBERON:0003296,4.18e-11,4;UBERON:0010133,4.18e-11,4;UBERON:0001905,8.28e-11,2;UBERON:0002757,8.28e-11,2;UBERON:0010134,8.28e-11,2;UBERON:0005408,8.28e-11,2;UBERON:0001899,8.28e-11,2;UBERON:0000013,1.96e-09,5;UBERON:0002410,1.96e-09,5;UBERON:0003075,7.76e-09,82;UBERON:0007284,7.76e-09,82;UBERON:0010371,1.53e-08,104;UBERON:0002346,2.76e-08,86;UBERON:0003056,5.86e-08,61;UBERON:0001016,8.63e-08,89;UBERON:0001782,6.75e-07,3;UBERON:0005424,6.75e-07,3;UBERON:0005383,9.92e-07,3;UBERON:0005382,9.92e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.472674085820339,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,0.530119073285941,1.16193942869518,0.829288440122964,1.7662459561294,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0.514703430895577,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.38545262744417,1.31205858279882,0.650756789328606,0.103041011647722,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,1.1750647824022,0,0,0,0,4.33965244425326,1.11598390910176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728163130497081,0,0,0,0,0,0.994147647766298,0.703347082052564,0,0,0,0,0.552567831062295,0.251932747854276,0,0,0,0,0,0,0.295930216910801,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,7.29224978719828,1.77148277162768,0.844175070377856,7.62908681585416,0.774054819518572,3.54657142744257,0.219385397153973,0,0.139423744278603,0.0769502585037971,0,0.23056390438806,0,0,0,0,0,3.06579894587209,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0.995261931078505,0.353830258013357,1.83309043480088,0,0,0,0.337005664903385,0,3.27970224015475,0,0.391329237864179,0,0,1.20990716048664,0.30607276163049,0.063186579628488,0,0.207376382794494,0,0,0.313932918407225,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0.353024506766001,16.0446325954178,0,0,0.189932387867636,0,0,0,0,0.144090417154106,4.58146384663663,0,0,0,0.235694034616795,0,0,0,0,0,0.273810757783986,0,0,0,0.837847203816763,0.229160424011684,1.43574604915363,0,0.429226048136571,0.446342914883745,0,0,0,0,0,0,0,0,0,0.136203406111576,0.643012593860077,0.962776056180637,1.24632101408756,0,0,0.182248669974074,0.670869375198532,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,1.09937867375164,0,0,0,0,0.332787154610557,0.310482014706917,0.415045904808692,0,0,0,0,11.708372645172,3.76794674388145,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0.19998739585493,0,0,0,0,0,0,18.6725782103331,20.9180134109563,0,22.6063951057469,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0.252071696221718,0.276629009856872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0.496211178389294,0,0,10.7140367175657,24.884995444193,1.21393120847326,0.91064876540519,0,0,0,0.271878931907327,0.0657727735628491,0,0,0.313972371402056,1.57115589916002,0,10.0447459256045,0,0,12.8657779517981,3.00225862292181,6.16079554451064,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,3.80544290488219,0,4.06779911958088,0.452888530700021,0.154348316215889,1.74847648403166,0,0,0.471353094203252,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0.458729283404541,0,0.157771562193185,0.203974470572744,0,1.5870805215462,0,0,0,0,0.764859003745869,0.126698501011437,0.815910637935854,0,0.18378979906969,2.75778293221613,0.151557396436479,0.535928260312357,1.65833887891756,0.103432995861895,0,0.23806443146374,9.81751429507293,7.75933928698224,0,0,0,0,0,0.202056159043763,0.0717222053926763,0.665320713092027,0,0,0,0,2.34640942403454,0,0.813792356631477,0,1.81146414231924,0 | |||
|short_description=p3@CHRNA3 | |||
}} |
Latest revision as of 07:12, 19 September 2015
Short description: | p3@CHRNA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CHRNA3_5end |
Coexpression cluster: | C1753_neuroblastoma_pineal_rectum_retina_merkel_carcinosarcoma_eye |
Association with transcript: | -31bp_to_uc002bea.2, uc002beb.2, uc002bec.2_5end |
EntrezGene: | CHRNA3 |
HGNC: | 1957 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.93e-10 | 2 |
embryonic stem cell | 3.60e-08 | 5 |
retinal pigment epithelial cell | 6.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
diencephalon | 3.29e-16 | 7 |
future diencephalon | 3.29e-16 | 7 |
retina | 1.96e-12 | 6 |
photoreceptor array | 1.96e-12 | 6 |
posterior segment of eyeball | 1.96e-12 | 6 |
regional part of diencephalon | 3.41e-11 | 4 |
gland of diencephalon | 4.18e-11 | 4 |
neuroendocrine gland | 4.18e-11 | 4 |
pineal body | 8.28e-11 | 2 |
regional part of epithalamus | 8.28e-11 | 2 |
secretory circumventricular organ | 8.28e-11 | 2 |
circumventricular organ | 8.28e-11 | 2 |
epithalamus | 8.28e-11 | 2 |
sympathetic nervous system | 1.96e-09 | 5 |
autonomic nervous system | 1.96e-09 | 5 |
neural plate | 7.76e-09 | 82 |
presumptive neural plate | 7.76e-09 | 82 |
ecto-epithelium | 1.53e-08 | 104 |
neurectoderm | 2.76e-08 | 86 |
pre-chordal neural plate | 5.86e-08 | 61 |
nervous system | 8.63e-08 | 89 |
pigmented layer of retina | 6.75e-07 | 3 |
presumptive retinal pigmented epithelium | 6.75e-07 | 3 |
caudate-putamen | 9.92e-07 | 3 |
dorsal striatum | 9.92e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.35e-08 | 6 |