FFCP PHASE1:Hg19::chr2:198540302..198540318,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=130132 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26402 | |||
|TSSclassifier=strong | |||
|UniProt=Q52LD8 | |||
|association_with_transcript=265bp_to_NM_144629,uc002uuo.3_5end | |||
|cluster_id=chr2:198540302..198540318,- | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_1_at_RFTN2_5end | |||
|id=chr2:198540302..198540318,- | |||
|ontology_enrichment_celltype=CL:0000055!4.09e-10!180;CL:0000136!6.49e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;3.04e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,7.39e-08,15 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.20e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.27e-33!82;UBERON:0002616!5.09e-33!59;UBERON:0007023!5.58e-33!115;UBERON:0001049!5.61e-33!57;UBERON:0005068!5.61e-33!57;UBERON:0006241!5.61e-33!57;UBERON:0007135!5.61e-33!57;UBERON:0005743!2.18e-32!86;UBERON:0000073!2.67e-30!94;UBERON:0001016!2.67e-30!94;UBERON:0000955!4.20e-28!69;UBERON:0006238!4.20e-28!69;UBERON:0002346!9.35e-27!90;UBERON:0003075!3.88e-26!86;UBERON:0007284!3.88e-26!86;UBERON:0003080!3.57e-25!42;UBERON:0002780!5.73e-25!41;UBERON:0001890!5.73e-25!41;UBERON:0006240!5.73e-25!41;UBERON:0002020!9.47e-23!34;UBERON:0003528!9.47e-23!34;UBERON:0001893!1.16e-22!34;UBERON:0002791!5.22e-22!33;UBERON:0000033!2.21e-21!123;UBERON:0001869!3.78e-21!32;UBERON:0000924!6.32e-21!173;UBERON:0006601!6.32e-21!173;UBERON:0000153!8.21e-21!129;UBERON:0007811!8.21e-21!129;UBERON:0004121!3.40e-20!169;UBERON:0003056!3.40e-19!61;UBERON:0000477!1.11e-17!286;UBERON:0000475!5.21e-17!365;UBERON:0002619!2.15e-16!22;UBERON:0000956!2.65e-16!25;UBERON:0000203!2.65e-16!25;UBERON:0004111!8.56e-16!241;UBERON:0001950!5.69e-15!20;UBERON:0000119!1.79e-14!312;UBERON:0000025!1.91e-14!194;UBERON:0000468!3.79e-14!659;UBERON:0000483!8.50e-14!309;UBERON:0000481!2.58e-12!347;UBERON:0000480!5.05e-09!626;UBERON:0000467!5.22e-09!625;UBERON:0003076!7.15e-09!15;UBERON:0003057!7.15e-09!15;UBERON:0000922!2.23e-08!612;UBERON:0002308!5.98e-08!9;UBERON:0000125!5.98e-08!9;UBERON:0002420!6.84e-08!9;UBERON:0007245!6.84e-08!9;UBERON:0010009!6.84e-08!9;UBERON:0010011!6.84e-08!9;UBERON:0000454!6.84e-08!9;UBERON:0000064!7.10e-08!219;UBERON:0002050!1.37e-07!605;UBERON:0005423!1.37e-07!605;UBERON:0004732!1.95e-07!13;UBERON:0000923!2.63e-07!604;UBERON:0005291!2.63e-07!604;UBERON:0006598!2.63e-07!604;UBERON:0002532!2.63e-07!604;UBERON:0004733!9.45e-07!12;UBERON:0002028!9.45e-07!12;UBERON:0007277!9.45e-07!12;UBERON:0001871!9.72e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.15e-22;34!UBERON:0002020;1.15e-22;34!UBERON:0001893;1.16e-22;34!UBERON:0002791;1.58e-22;32!UBERON:0001869;2.12e-22;32!UBERON:0002780;2.75e-21;41!UBERON:0001890;2.75e-21;41!UBERON:0000073;3.71e-20;53!UBERON:0002616;3.71e-20;53!UBERON:0000956;5.04e-19;25!UBERON:0000203;5.04e-19;25!UBERON:0002619;5.27e-19;22!UBERON:0001950;2.50e-17;20!UBERON:0001017;1.42e-15;75!UBERON:0000955;2.29e-14;68!UBERON:0001016;9.31e-13;83!UBERON:0007023;1.83e-10;114!UBERON:0000125;4.41e-09;9!UBERON:0002308;4.41e-09;9!UBERON:0002420;5.13e-09;9!UBERON:0007245;5.13e-09;9!UBERON:0010009;5.13e-09;9!UBERON:0010011;5.13e-09;9!UBERON:0000454;5.13e-09;9!UBERON:0011216;6.57e-08;132!UBERON:0004732;1.01e-07;13!UBERON:0009663;2.25e-07;7!UBERON:0004733;6.23e-07;12!UBERON:0002028;6.23e-07;12!UBERON:0001871;8.38e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.17e-37,56;UBERON:0005068,2.17e-37,56;UBERON:0006241,2.17e-37,56;UBERON:0007135,2.17e-37,56;UBERON:0001017,2.92e-37,81;UBERON:0007023,2.54e-36,114;UBERON:0000073,1.08e-34,53;UBERON:0002616,1.08e-34,53;UBERON:0001016,1.85e-33,89;UBERON:0000955,5.96e-32,68;UBERON:0006238,5.96e-32,68;UBERON:0002346,2.81e-31,86;UBERON:0003075,2.12e-30,82;UBERON:0007284,2.12e-30,82;UBERON:0002780,4.32e-29,41;UBERON:0001890,4.32e-29,41;UBERON:0003080,4.32e-29,41;UBERON:0006240,4.32e-29,41;UBERON:0010314,5.85e-27,132;UBERON:0003528,1.77e-26,34;UBERON:0002020,1.77e-26,34;UBERON:0001893,2.24e-26,34;UBERON:0004121,6.08e-25,171;UBERON:0000924,6.08e-25,171;UBERON:0006601,6.08e-25,171;UBERON:0002791,9.79e-25,32;UBERON:0001869,1.36e-24,32;UBERON:0010371,2.58e-23,104;UBERON:0003056,3.19e-21,61;UBERON:0002619,5.34e-19,22;UBERON:0000956,6.84e-19,25;UBERON:0000203,6.84e-19,25;UBERON:0001950,2.52e-17,20;UBERON:0011216,1.23e-15,223;UBERON:0004111,2.76e-12,240;UBERON:0000025,2.35e-11,192;UBERON:0000119,1.12e-10,309;UBERON:0000483,4.76e-10,306;UBERON:0003076,2.31e-09,15;UBERON:0003057,2.31e-09,15;UBERON:0000125,4.50e-09,9;UBERON:0002308,4.50e-09,9;UBERON:0002420,5.27e-09,9;UBERON:0007245,5.27e-09,9;UBERON:0010009,5.27e-09,9;UBERON:0010011,5.27e-09,9;UBERON:0000454,5.27e-09,9;UBERON:0004732,1.04e-07,13;UBERON:0000923,1.68e-07,560;UBERON:0010316,1.68e-07,560;UBERON:0005291,1.68e-07,560;UBERON:0006598,1.68e-07,560;UBERON:0010317,1.68e-07,560;UBERON:0002532,1.68e-07,560;UBERON:0002050,1.87e-07,564;UBERON:0009663,2.28e-07,7;UBERON:0004733,6.38e-07,12;UBERON:0002028,6.38e-07,12;UBERON:0007277,6.38e-07,12;UBERON:0001871,8.29e-07,6;UBERON:0000479,8.45e-07,773 | |||
|phase1_expression=5.26867299884614,4.92431204949261,7.89344662937438,7.00513088471913,4.46961094427288,6.10636966870258,5.06599756336621,2.52687949370732,2.87304191019822,0,0,0,0,4.45558870656168,2.65117900582333,1.34465029290355,0.602694528023977,0.730310090387373,0.975865597581014,2.21617904538218,0.816002764977012,1.56727360739044,3.43483184557268,1.23186982565596,1.38096903554283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,3.35350429851818,0.639312809217652,5.78302643815306,3.00802746381534,7.9665585428453,11.1340032587154,14.1124112387764,1.60709189178915,1.33037638477538,0.43917392846563,4.25681995367566,0,0,0,0,0,0,0,0,2.38514888840046,0,0.694281003215189,1.13061588384802,0.419499436209906,0.550236083880135,1.04497483268405,4.90991842421725,6.40379272836078,3.68192674041137,2.41697590265488,3.04108842287405,2.68468263302986,0.735326160691737,1.62028389576352,3.48268940307911,2.46982309888787,2.25222960966644,1.53316637465883,0,2.01521918323448,0,0,0,0.496971951695318,0.506522046658319,0.264818361626438,0.860509862246441,0,1.12135520028461,0,0,4.97937656639626,0.942974704487816,2.28846664358842,8.47601594811616,12.09969441408,0.468642863667593,0.312160076830321,1.1409436430889,0.597794722207204,1.76151747965647,1.61872944368132,2.66856532734272,3.87892925384297,2.08818339430006,4.95963749643674,4.75201142912821,2.96720315134268,0,0,4.71341119071385,3.87867411603089,3.3247693858102,1.75591048352335,0.919463387397059,2.40380894250555,0.453728732640084,0.358779271377724,5.55249210928275,1.48352330811693,0.600182192168805,0.824420233907511,1.54584324027377,1.67505170698431,0.843881661206331,0.389748020644795,2.01947019395292,3.03764665519588,0.80823028409406,4.26011511019937,1.71278566986988,0.169560592310488,0.386521706326594,0,0,0.609868530647977,0.265059536642971,0.69716365721711,3.73179798055334,0,0,1.56449532329816,3.21620469096443,0,1.85747171212792,2.16563844500876,0,0,0,0,0,0,0,0,0,0.738155454624648,0,1.6462960453256,1.47008711385542,0,0,3.54473944008842,0,0.368965315629341,0.514703430895577,0,0,0,0,0.325808305310325,2.07986957055916,0,1.73895607462615,1.52631302506568,6.78522304477047,4.1668696131895,10.0834700684337,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0.50496973370552,3.04789892602411,0.381988425558278,3.51652341630141,1.71072446022705,0.925447434329912,0,10.0039251420702,1.79409734952577,3.92364061949952,3.6669142910475,5.30014034606889,3.57656445851882,2.535908257668,3.45719551560332,4.16029747645464,1.02882949704857,0,0.266422179016099,3.0025378668211,2.71310802695722,0.823240336780769,0,1.77695974371273,2.37585561880029,0.301439377059586,0,0.199945982364114,0,0,0,2.63587341040741,0,1.42636905040718,0.579125226670317,2.05476322550383,1.43248770591916,0,0,0,0,8.63921722356376,5.20559415430487,2.31986643833309,3.18280904135263,2.55175500661265,0,0,0,10.4287767961269,5.00170521059677,0.813795071099207,0.207970861530807,0,0,1.40569697991256,4.51419149591578,0,3.10419213877515,1.99267679560631,0.368738337083406,0.695068915744663,3.13281851940385,3.0882908142977,0,0,0,0,0,0,2.23297027036899,5.37116906508219,3.64858122762996,1.92208723883551,0.511707249066704,3.37793234401576,0,1.3878872442239,0.532685175939381,3.28508624055237,1.03850885836724,1.97557643381931,0,0,0,0.114814448164607,0.182091168006717,0.917870904715969,0,0.0770153371044148,0,0,0,0,0.340187410553031,1.29549549661284,3.08454505380579,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,5.35813260568156,0.457847324091717,1.40266149865,0,0,3.21367859688319,1.25671933779759,1.54048617114644,4.91211759123615,1.24052915236078,5.15617175367713,4.0604674295984,1.02271952899321,4.45160178233687,0,0,0.255225424989168,0,0.464845549297286,0.62962469366128,0,0,1.06461206063404,0,1.29726953372744,1.43124886741991,11.16475108079,5.37845022021834,1.71567174531442,0,1.71175595213568,0.318203247925937,0,3.95719406683292,3.56898138656871,1.64937363283961,0.202182481573316,0,1.26377536871694,0.975267478179181,3.65570234446927,1.05650146756755,0.818999468447914,0.565621727814851,0,1.65409603063837,1.32687795048244,1.31535265576129,0.578775534266688,7.21484227251296,0.811641507850816,0.92947049429925,0,0.430234056612155,1.27723753317057,0,0.709522128141196,6.33322905892992,3.62224382255892,1.13841952129715,3.49934720244983,0,0,0,5.93105944893709,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0.569134746787313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39203086947621,0,0,0,0,0,4.10222901961303,0,0,0,0,0,0,25.8478388419237,56.4084359806156,0,0,0.844501632511974,6.97367958878744,2.48655523978033,0,0,0,1.86623752597084,0,0,0,2.86065876347107,0,1.11136990144637,30.0493151289518,30.8917766878965,13.9729658600836,0,0,2.89999830173917,0.227586896570999,0,0,0.344743373241465,4.37406920074882,0,28.3437243460429,30.752091849479,1.52581736317083,26.8707601632876,15.664023804538,15.795748595086,0,0,8.0028268843949,0,0,0,0,0.31900115973192,4.30508688988753,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0.282706142867882,0,7.96209544862804,2.83064206410685,14.0536933334734,0.296521128680622,0,0,54.3253131824257,8.02577647298789,55.9892025283561,0,0,0.242780379534093,3.94584402849391,10.8891644443797,11.3246921803281,5.7499787461924,0.150323419414493,0,0,0,0,1.19472429772959,0.284609546029793,0,0,0,0.0870592065804026,2.62090002363045,0,0.0967563312890851,0,0,2.81268147816416,0,12.4289407429293,0.137041924646751,0,22.5386433602928,0.195551382734803,0,1.70762395791482,0,0,0,0.171594997861965,0,0,0,0.271808412147228,0.104602846312333,0,0,31.2218550129091,84.8813349130357,0,2.14882720709979,0,12.5677080572514,6.18733144831546,7.89660327034495,0.599037001496973,1.28767814440971,3.79391477651183,5.3746777989381,1.80149941771202,0,0,0,0.0674035438541849,0.0984274815147488,0,27.8330391433256,67.9654996496762,0.643012593860077,1.2378549293751,2.07720169014593,0,0,16.2201316276926,0.670869375198532,2.20655980437755,4.45863999147484,0.211200673038813,0.35857467866569,0,4.2881719582402,2.64836788146173,0,0,0,0.653174720218818,0,0,4.77086460999181,0,0.58620893471233,2.65013777824443,32.7085879594723,68.3642551009707,0.171086837884329,0,2.66968531419237,6.4453765090863,2.89967338743037,4.46549419630756,0.197611631897944,0,0,2.72008901684737,3.7603484103405,4.59518365145192,6.22957998348628,0.157054096250234,11.5188863395708,17.6938084107847,44.6931622622204,32.110914958644,56.9066034384052,28.2538633383295,0,0,1.81978941049977,2.85465333544967,0,0,0,1.19403842309499,3.73941295755559,0.554805861502613,4.35626912132705,3.52195062453605,0.889811221596536,0.915360273587694,0.907385542579434,3.41961841282117,1.77426179987561,1.91156120596443,1.34940933649081,1.70789252563885,1.65882483136342,2.39257543102195,1.5652351854352,0,0,1.22061219961398,2.90957854724095,0.537052785212442,1.85613503951397,2.3885753321917,0,2.74716564146234,2.69399591012735,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.8923061539744,0.194860308839388,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,1.25812753484717,0.327628914576042,3.05518553917245,8.92814664427068,6.69253126998612,1.67593475391973,0.954013051960256,0,0,9.52225047964847,2.1437183414724,22.8013749092431,14.1696576325585,56.989287683403,31.5879200930763,8.57043767153842,11.6184184139886,29.227091859365,41.4031318751548,0.196295437002051,0,0,0,1.52552838186867,0,4.57507310867432,4.13656805920915,0.20170506870352,1.56302802246618,0,0,0,17.627309585401,19.5269524653462,35.1367554052013,20.0393960212746,13.6743702254555,1.64477330057155,5.95453414067153,0,0.127762427639595,1.60710550763486,5.71682327772001,1.21393120847326,1.13831095675649,2.48366636455389,0,0,26.5761655939412,17.0351483527779,0.236387681767936,0,4.16013392107724,30.9517712134524,0.280272163313789,17.3500156896804,0,0,8.43423221284545,0,0,7.64976398131349,0,0,0,0,0.860454717640555,0,0.340853619036631,5.50403165248208,0.22910686854405,0,0,0,0,0,0,0.923965261706223,6.95888658802919,22.8284166737796,0,0,0.237840181555137,0,0.109940516745429,0,1.23478652972711,4.15263164957519,0,2.94177986104687,0.942706188406504,48.4881913773915,82.2818528906028,56.2132117685922,2.20905249094162,0.845855261818682,3.80301539044105,0,0.357107877211315,0,0,3.65168194123259,1.37618785021362,109.65478111086,0.315543124386369,10.4706894894009,9.5997151874883,5.81929524566941,5.20793025433452,13.4030932303111,5.62414530760926,0.504665699340316,2.73163929909239,0.126698501011437,0,0,0,0,4.24360710022141,0.803892390468535,37.3126247756451,99.9162740025908,4.4779136199206,12.1412860046508,0,1.11734485732544,0,2.67318064768293,5.45716410187192,1.74173398317569,9.24029912930259,1.21233695426258,2.00822175099494,23.2862249582209,0,0.213454691755431,0,0,11.7320471201727,1.71138021856013,15.0551585976823,5.99181096766961,3.42165449104745,0 | |||
|short_description=p1@RFTN2 | |||
}} |
Latest revision as of 08:28, 19 September 2015
Short description: | p1@RFTN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RFTN2_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 265bp_to_NM_144629, uc002uuo.3_5end |
EntrezGene: | RFTN2 |
HGNC: | 26402 |
UniProt: | Q52LD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 7.39e-08 | 15 |