FFCP PHASE1:Hg19::chr22:24096630..24096641,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29802 | |EntrezGene=29802 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12710 | |HGNC=12710 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UKI3 | |UniProt=Q9UKI3 | ||
|association_with_transcript=0bp_to_NM_013378,uc002zxt.2_5end | |association_with_transcript=0bp_to_NM_013378,uc002zxt.2_5end | ||
|cluster_id=chr22:24096630..24096641,- | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_2_at_VPREB3_5end | |description=CAGE_peak_2_at_VPREB3_5end | ||
|id=chr22:24096630..24096641,- | |id=chr22:24096630..24096641,- | ||
|ontology_enrichment_celltype=CL:0000945!2.83e-54!24;CL:0000826!2.83e-54!24;CL:0000236!4.17e-38!14;CL:0000542!9.49e-24!53;CL:0000051!9.49e-24!53;CL:0000838!6.98e-22!52;CL:0002087!4.61e-10!119;CL:0002322!1.70e-09!5;CL:0000738!1.13e-07!140;CL:0000037!3.72e-07!172;CL:0000566!3.72e-07!172;CL:0002031!8.36e-07!124 | |ontology_enrichment_celltype=CL:0000945!2.83e-54!24;CL:0000826!2.83e-54!24;CL:0000236!4.17e-38!14;CL:0000542!9.49e-24!53;CL:0000051!9.49e-24!53;CL:0000838!6.98e-22!52;CL:0002087!4.61e-10!119;CL:0002322!1.70e-09!5;CL:0000738!1.13e-07!140;CL:0000037!3.72e-07!172;CL:0000566!3.72e-07!172;CL:0002031!8.36e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.43e-71;13!CL:0000945;6.08e-53;24!CL:0000542;2.84e-20;53!CL:0000817;1.74e-09;1!CL:0002032;8.82e-09;1!CL:0000557;8.82e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.34e-66,14;CL:0000945,5.36e-53,24;CL:0000826,5.36e-53,24;CL:0000542,1.72e-26,53;CL:0000051,1.72e-26,53;CL:0000838,3.18e-23,52;CL:0002087,1.05e-10,115;CL:0000738,1.14e-08,136;CL:0002031,1.23e-08,120;CL:0002032,4.31e-08,161;CL:0000837,4.31e-08,161;CL:0000037,1.21e-07,168;CL:0000988,4.07e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000051;2.84e-20;53!UBERON:0001045;5.98e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:12603;4.19e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,4.19e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.43e-07!115;UBERON:0001829!4.37e-07!2;UBERON:0000178!9.09e-07!15;UBERON:0000179!9.09e-07!15;UBERON:0000463!9.09e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;6.99e-11;3!UBERON:0001301;2.82e-09;1!UBERON:0000029;4.19e-09;1!UBERON:0001154;5.98e-09;1!UBERON:0001153;5.98e-09;1!UBERON:0009854;5.98e-09;1!UBERON:0002372;8.82e-09;1!UBERON:0001961;8.82e-09;1!UBERON:0001744;8.82e-09;1!UBERON:0001042;8.82e-09;1!UBERON:0001735;8.82e-09;1!UBERON:0004177;7.18e-07;5!UBERON:0005057;7.18e-07;5!UBERON:0002405;8.49e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.56e-11,3;UBERON:0004854,8.56e-11,3;UBERON:0009034,8.56e-11,3;UBERON:0002095,8.56e-11,3;UBERON:0004782,8.56e-11,3;UBERON:0003281,8.56e-11,3;UBERON:0009664,8.56e-11,3;UBERON:0002296,8.56e-11,3;UBERON:0005602,8.56e-11,3;UBERON:0001179,8.56e-11,3;UBERON:0006293,8.56e-11,3;UBERON:0001301,2.82e-09,1;UBERON:0000029,3.88e-09,1;UBERON:0001154,6.22e-09,1;UBERON:0001153,6.22e-09,1;UBERON:0001045,6.22e-09,1;UBERON:0002372,7.27e-09,1;UBERON:0001961,7.27e-09,1;UBERON:0001744,7.27e-09,1;UBERON:0001735,7.27e-09,1 | |||
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| ||
|short_description=p2@VPREB3 | |short_description=p2@VPREB3 | ||
}} | }} |
Latest revision as of 09:14, 19 September 2015
Short description: | p2@VPREB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VPREB3_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_NM_013378, uc002zxt.2_5end |
EntrezGene: | VPREB3 |
HGNC: | 12710 |
UniProt: | Q9UKI3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.34e-66 | 14 |
lymphocyte of B lineage | 5.36e-53 | 24 |
pro-B cell | 5.36e-53 | 24 |
lymphocyte | 1.72e-26 | 53 |
common lymphoid progenitor | 1.72e-26 | 53 |
lymphoid lineage restricted progenitor cell | 3.18e-23 | 52 |
nongranular leukocyte | 1.05e-10 | 115 |
leukocyte | 1.14e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 1.23e-08 | 120 |
hematopoietic oligopotent progenitor cell | 4.31e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.31e-08 | 161 |
hematopoietic stem cell | 1.21e-07 | 168 |
hematopoietic cell | 4.07e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.56e-11 | 3 |
gastrointestinal system mesentery | 8.56e-11 | 3 |
stomach region | 8.56e-11 | 3 |
mesentery | 8.56e-11 | 3 |
gastrointestinal system serosa | 8.56e-11 | 3 |
mesentery of stomach | 8.56e-11 | 3 |
gut mesentery | 8.56e-11 | 3 |
dorsal mesentery | 8.56e-11 | 3 |
dorsal mesogastrium | 8.56e-11 | 3 |
peritoneal cavity | 8.56e-11 | 3 |
spleen primordium | 8.56e-11 | 3 |
epididymis | 2.82e-09 | 1 |
lymph node | 3.88e-09 | 1 |
vermiform appendix | 6.22e-09 | 1 |
caecum | 6.22e-09 | 1 |
midgut | 6.22e-09 | 1 |
tonsil | 7.27e-09 | 1 |
mucosa-associated lymphoid tissue | 7.27e-09 | 1 |
lymphoid tissue | 7.27e-09 | 1 |
tonsillar ring | 7.27e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 4.19e-09 | 1 |