FFCP PHASE1:Hg19::chr2:201754233..201754242,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:201754233..201754242,+
|short_description=p4@NIF3L1
|description=CAGE_peak_4_at_NIF3L1_5end
|association_with_transcript=63bp_to_ENST00000409129_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60491 | |EntrezGene=60491 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13390 | |HGNC=13390 | ||
|TSSclassifier=strong | |||
|UniProt=B8ZZI0 | |UniProt=B8ZZI0 | ||
|association_with_transcript=63bp_to_ENST00000409129_5end | |||
|cluster_id=chr2:201754233..201754242,+ | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_4_at_NIF3L1_5end | |||
|id=chr2:201754233..201754242,+ | |||
|ontology_enrichment_celltype=CL:0000988!8.58e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000511;1.55e-09;1!CL:0002625;1.55e-09;1!CL:0000216;1.55e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000511,1.15e-09,1;CL:0002625,1.15e-09,1;CL:0000216,1.15e-09,1;CL:0000988,5.11e-08,177;CL:0000763,1.48e-07,108;CL:0000049,1.48e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.34e-11!235;DOID:14566!1.16e-10!239;DOID:2531!5.75e-10!51;DOID:0060083!5.75e-10!51;DOID:1240!1.71e-09!39;DOID:8692!1.75e-08!31;DOID:1036!8.33e-08!8;DOID:305!3.62e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.35e-26;8!DOID:8692;3.39e-25;31!DOID:1240;9.50e-22;39!DOID:2531;5.44e-14;51!DOID:0060083;5.44e-14;51!DOID:1799;1.55e-09;1!DOID:10165;1.55e-09;1!DOID:1798;1.55e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.85e-26,8;DOID:8692,9.62e-26,31;DOID:1240,1.98e-24,39;DOID:2531,2.92e-18,51;DOID:0060083,2.92e-18,51;DOID:1799,2.08e-09,1;DOID:10165,2.08e-09,1;DOID:1798,2.08e-09,1;DOID:0050686,4.75e-08,137 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001136;1.55e-09;1!UBERON:0001343;1.55e-09;1!UBERON:0004910;1.55e-09;1!UBERON:0004813;1.55e-09;1!UBERON:0002331;3.14e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,1.15e-09,1;UBERON:0001343,1.15e-09,1;UBERON:0004910,1.15e-09,1;UBERON:0005154,1.15e-09,1;UBERON:0005295,1.15e-09,1;UBERON:0004813,1.15e-09,1;UBERON:0005297,1.15e-09,1;UBERON:0005294,1.15e-09,1;UBERON:0010141,1.15e-09,1;UBERON:0005891,1.15e-09,1;UBERON:0002331,3.14e-08,10;UBERON:0000358,3.14e-08,10;UBERON:0000307,3.14e-08,10;UBERON:0000091,3.14e-08,10;UBERON:0000087,3.14e-08,10;UBERON:0007010,3.14e-08,10;UBERON:0007806,3.14e-08,10;UBERON:0008780,3.14e-08,10;UBERON:0005728,3.14e-08,10 | |||
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| ||
|short_description=p4@NIF3L1 | |||
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Latest revision as of 11:34, 19 September 2015
Short description: | p4@NIF3L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NIF3L1_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 63bp_to_ENST00000409129_5end |
EntrezGene: | NIF3L1 |
HGNC: | 13390 |
UniProt: | B8ZZI0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
androgen binding protein secreting cell | 1.15e-09 | 1 |
seminiferous tubule epithelial cell | 1.15e-09 | 1 |
Sertoli cell | 1.15e-09 | 1 |
hematopoietic cell | 5.11e-08 | 177 |
myeloid cell | 1.48e-07 | 108 |
common myeloid progenitor | 1.48e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 1.15e-09 | 1 |
seminiferous tubule of testis | 1.15e-09 | 1 |
epithelium of male gonad | 1.15e-09 | 1 |
epithelial cord | 1.15e-09 | 1 |
sex cord | 1.15e-09 | 1 |
seminiferous tubule epithelium | 1.15e-09 | 1 |
testis sex cord | 1.15e-09 | 1 |
genital ridge | 1.15e-09 | 1 |
primitive sex cord of indifferent gonad | 1.15e-09 | 1 |
coelomic epithelium | 1.15e-09 | 1 |
umbilical cord | 3.14e-08 | 10 |
blastocyst | 3.14e-08 | 10 |
blastula | 3.14e-08 | 10 |
bilaminar disc | 3.14e-08 | 10 |
inner cell mass | 3.14e-08 | 10 |
cleaving embryo | 3.14e-08 | 10 |
connecting stalk | 3.14e-08 | 10 |
inner cell mass derived epiblast | 3.14e-08 | 10 |
extraembryonic mesoderm | 3.14e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.85e-26 | 8 |
myeloid leukemia | 9.62e-26 | 31 |
leukemia | 1.98e-24 | 39 |
hematologic cancer | 2.92e-18 | 51 |
immune system cancer | 2.92e-18 | 51 |
islet cell tumor | 2.08e-09 | 1 |
endocrine pancreas cancer | 2.08e-09 | 1 |
pancreatic endocrine carcinoma | 2.08e-09 | 1 |
organ system cancer | 4.75e-08 | 137 |