FFCP PHASE1:Hg19::chr3:108541608..108541624,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50852 | |EntrezGene=50852 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30698 | |HGNC=30698 | ||
|TSSclassifier=strong | |||
|UniProt=C9JF66 | |UniProt=C9JF66 | ||
|association_with_transcript=0bp_to_ENST00000426646,ENST00000484927,ENST00000493604_5end | |||
|cluster_id=chr3:108541608..108541624,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_TRAT1_5end | |||
|id=chr3:108541608..108541624,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.99e-32!140;CL:0000084!2.67e-28!25;CL:0000827!2.67e-28!25;CL:0000791!1.29e-27!18;CL:0000789!1.29e-27!18;CL:0002420!1.29e-27!18;CL:0002419!1.29e-27!18;CL:0000790!1.29e-27!18;CL:0000037!5.36e-25!172;CL:0000566!5.36e-25!172;CL:0002087!7.33e-25!119;CL:0000988!1.83e-22!182;CL:0002031!9.05e-22!124;CL:0002032!1.25e-21!165;CL:0000837!1.25e-21!165;CL:0000838!8.60e-20!52;CL:0000542!3.13e-19!53;CL:0000051!3.13e-19!53;CL:0000625!1.04e-17!11;CL:0000624!2.12e-10!6;CL:0000766!1.05e-09!76;CL:0000763!8.97e-07!112;CL:0000049!8.97e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000084;6.78e-47;25!CL:0000791;8.20e-45;18!CL:0000789;8.20e-45;18!CL:0002419;8.20e-45;18!CL:0000625;2.54e-28;11!CL:0000624;3.53e-16;6!CL:0000542;8.18e-15;53!CL:0000898;4.45e-09;3!CL:0000226;2.33e-08;3!CL:0000842;2.33e-08;3!CL:0000767;4.06e-08;3!CL:0000623;4.65e-08;3!CL:0002087;1.05e-07;104!CL:0000094;2.00e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,6.96e-47,25;CL:0000827,6.96e-47,25;CL:0000791,8.78e-45,18;CL:0000789,8.78e-45,18;CL:0002420,8.78e-45,18;CL:0002419,8.78e-45,18;CL:0000790,8.78e-45,18;CL:0000625,2.61e-28,11;CL:0000838,1.54e-27,52;CL:0000542,7.08e-27,53;CL:0000051,7.08e-27,53;CL:0000738,2.64e-24,136;CL:0002087,5.56e-19,115;CL:0000037,1.32e-18,168;CL:0000988,4.48e-17,177;CL:0000624,3.49e-16,6;CL:0002032,2.13e-15,161;CL:0000837,2.13e-15,161;CL:0002031,3.00e-15,120;CL:0000898,4.34e-09,3;CL:0000226,2.19e-08,3;CL:0000842,2.19e-08,3;CL:0000767,4.32e-08,3;CL:0000623,4.32e-08,3;CL:0000825,4.32e-08,3;CL:0000094,1.98e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;8.20e-45;18!CL:0000051;8.18e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.22e-15!102;UBERON:0003061!1.22e-15!102;UBERON:0002193!6.18e-15!112;UBERON:0000178!6.92e-13!15;UBERON:0000179!6.92e-13!15;UBERON:0000463!6.92e-13!15;UBERON:0007023!1.05e-09!115;UBERON:0004177!5.39e-08!7;UBERON:0002370!2.10e-07!4;UBERON:0005058!2.10e-07!4;UBERON:0009113!2.10e-07!4;UBERON:0003295!2.10e-07!4;UBERON:0005562!2.10e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.55e-18;15!UBERON:0000179;6.55e-18;15!UBERON:0000463;6.55e-18;15!UBERON:0002390;4.01e-11;32!UBERON:0002193;1.59e-08;42!UBERON:0002370;9.39e-07;2!UBERON:0005058;9.39e-07;2!UBERON:0009113;9.39e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.06e-18,15;UBERON:0000179,6.06e-18,15;UBERON:0000463,6.06e-18,15;UBERON:0002370,3.10e-11,4;UBERON:0005058,3.10e-11,4;UBERON:0009113,3.10e-11,4;UBERON:0003295,3.10e-11,4;UBERON:0005562,3.10e-11,4;UBERON:0004177,2.36e-09,7;UBERON:0005057,2.36e-09,7;UBERON:0002193,2.54e-08,108;UBERON:0002390,5.19e-08,98;UBERON:0003061,5.19e-08,98;UBERON:0003351,1.83e-07,6 | |||
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| ||
|short_description=p2@TRAT1 | |||
}} | }} |
Latest revision as of 11:34, 19 September 2015
Short description: | p2@TRAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAT1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000426646, ENST00000484927, ENST00000493604_5end |
EntrezGene: | TRAT1 |
HGNC: | 30698 |
UniProt: | C9JF66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 6.96e-47 | 25 |
pro-T cell | 6.96e-47 | 25 |
mature alpha-beta T cell | 8.78e-45 | 18 |
alpha-beta T cell | 8.78e-45 | 18 |
immature T cell | 8.78e-45 | 18 |
mature T cell | 8.78e-45 | 18 |
immature alpha-beta T cell | 8.78e-45 | 18 |
CD8-positive, alpha-beta T cell | 2.61e-28 | 11 |
lymphoid lineage restricted progenitor cell | 1.54e-27 | 52 |
lymphocyte | 7.08e-27 | 53 |
common lymphoid progenitor | 7.08e-27 | 53 |
leukocyte | 2.64e-24 | 136 |
nongranular leukocyte | 5.56e-19 | 115 |
hematopoietic stem cell | 1.32e-18 | 168 |
hematopoietic cell | 4.48e-17 | 177 |
CD4-positive, alpha-beta T cell | 3.49e-16 | 6 |
hematopoietic oligopotent progenitor cell | 2.13e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-15 | 161 |
hematopoietic lineage restricted progenitor cell | 3.00e-15 | 120 |
naive T cell | 4.34e-09 | 3 |
single nucleate cell | 2.19e-08 | 3 |
mononuclear cell | 2.19e-08 | 3 |
basophil | 4.32e-08 | 3 |
natural killer cell | 4.32e-08 | 3 |
pro-NK cell | 4.32e-08 | 3 |
granulocyte | 1.98e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 6.06e-18 | 15 |
haemolymphatic fluid | 6.06e-18 | 15 |
organism substance | 6.06e-18 | 15 |
thymus | 3.10e-11 | 4 |
hemolymphoid system gland | 3.10e-11 | 4 |
thymic region | 3.10e-11 | 4 |
pharyngeal gland | 3.10e-11 | 4 |
thymus primordium | 3.10e-11 | 4 |
hemopoietic organ | 2.36e-09 | 7 |
immune organ | 2.36e-09 | 7 |
hemolymphoid system | 2.54e-08 | 108 |
hematopoietic system | 5.19e-08 | 98 |
blood island | 5.19e-08 | 98 |
pharyngeal epithelium | 1.83e-07 | 6 |