FFCP PHASE1:Hg19::chr6:105405517..105405559,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389421 | |EntrezGene=389421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=32207 | |HGNC=32207 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-414bp_to_uc010kda.1_5end | |association_with_transcript=-414bp_to_uc010kda.1_5end | ||
|cluster_id=chr6:105405517..105405559,+ | |||
|coexpression_cluster_id=C4539 | |coexpression_cluster_id=C4539 | ||
|description=CAGE_peak_1_at_LIN28B_5end | |description=CAGE_peak_1_at_LIN28B_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!4.01e-13!5 | |ontology_enrichment_celltype=CL:0002322!4.01e-13!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.26e-21;5!CL:0002321;2.51e-12;15!CL:0000039;3.36e-09;7!CL:0000586;3.36e-09;7 | |ontology_enrichment_celltype_v019=CL:0002322;4.26e-21;5!CL:0002321;2.51e-12;15!CL:0000039;3.36e-09;7!CL:0000586;3.36e-09;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.10e-21,5;CL:0000039,3.15e-09,7;CL:0000586,3.15e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.05e-09;10!UBERON:0005564;1.05e-09;10!UBERON:0003104;6.58e-07;31 | |ontology_enrichment_development_v019=UBERON:0009117;1.05e-09;10!UBERON:0005564;1.05e-09;10!UBERON:0003104;6.58e-07;31 | ||
|ontology_enrichment_disease=DOID:14566!7.03e-19!239;DOID:162!7.62e-18!235;DOID:3095!1.16e-14!22;DOID:2994!1.16e-14!22;DOID:0050687!1.60e-11!143;DOID:171!9.03e-10!10;DOID:169!7.38e-09!6;DOID:2531!1.20e-08!51;DOID:0060083!1.20e-08!51;DOID:1240!2.89e-08!39;DOID:1036!1.05e-07!8;DOID:8692!7.07e-07!31;DOID:0050686!7.47e-07!137 | |ontology_enrichment_disease=DOID:14566!7.03e-19!239;DOID:162!7.62e-18!235;DOID:3095!1.16e-14!22;DOID:2994!1.16e-14!22;DOID:0050687!1.60e-11!143;DOID:171!9.03e-10!10;DOID:169!7.38e-09!6;DOID:2531!1.20e-08!51;DOID:0060083!1.20e-08!51;DOID:1240!2.89e-08!39;DOID:1036!1.05e-07!8;DOID:8692!7.07e-07!31;DOID:0050686!7.47e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.03e-15;22!DOID:2994;2.03e-15;22!DOID:1036;1.26e-12;8!DOID:8692;1.73e-08;31!DOID:74;1.88e-08;2!DOID:1240;5.12e-08;39!DOID:2531;1.52e-07;51!DOID:0060083;1.52e-07;51 | |ontology_enrichment_disease_v019=DOID:3095;2.03e-15;22!DOID:2994;2.03e-15;22!DOID:1036;1.26e-12;8!DOID:8692;1.73e-08;31!DOID:74;1.88e-08;2!DOID:1240;5.12e-08;39!DOID:2531;1.52e-07;51!DOID:0060083;1.52e-07;51 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,1.86e-15,22;DOID:2994,1.86e-15,22;DOID:1036,1.34e-12,8;DOID:162,1.31e-10,235;DOID:14566,3.13e-10,239;DOID:2531,6.86e-10,51;DOID:0060083,6.86e-10,51;DOID:1240,8.73e-10,39;DOID:8692,1.08e-08,31;DOID:74,1.71e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000010!6.21e-08!8;UBERON:0000013!3.29e-07!5;UBERON:0002410!3.29e-07!5 | |ontology_enrichment_uberon=UBERON:0000010!6.21e-08!8;UBERON:0000013!3.29e-07!5;UBERON:0002410!3.29e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.66e-10;49!UBERON:0000473;4.72e-08;8 | |ontology_enrichment_uberon_v019=UBERON:0000922;2.66e-10;49!UBERON:0000473;4.72e-08;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.47e-08,8 | |||
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| ||
|short_description=p1@LIN28B | |short_description=p1@LIN28B | ||
}} | }} |
Latest revision as of 13:56, 19 September 2015
Short description: | p1@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIN28B_5end |
Coexpression cluster: | C4539_H9_chronic_testicular_HES3GFP_iPS_embryonic_anaplastic |
Association with transcript: | -414bp_to_uc010kda.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.10e-21 | 5 |
germ line cell | 3.15e-09 | 7 |
germ cell | 3.15e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 4.47e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.86e-15 | 22 |
germ cell cancer | 1.86e-15 | 22 |
chronic leukemia | 1.34e-12 | 8 |
cancer | 1.31e-10 | 235 |
disease of cellular proliferation | 3.13e-10 | 239 |
hematologic cancer | 6.86e-10 | 51 |
immune system cancer | 6.86e-10 | 51 |
leukemia | 8.73e-10 | 39 |
myeloid leukemia | 1.08e-08 | 31 |
hematopoietic system disease | 1.71e-08 | 2 |