FFCP PHASE1:Hg19::chr22:28197702..28197758,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:28197702..28197758,- to FFCP PHASE1:Hg19::chr22:28197702..28197758,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4330 | |EntrezGene=4330 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7180 | |HGNC=7180 | ||
|TSSclassifier=strong | |||
|UniProt=Q10571 | |UniProt=Q10571 | ||
|association_with_transcript=-216bp_to_ENST00000302326,NM_002430,uc003adj.2_5end | |||
|cluster_id=chr22:28197702..28197758,- | |||
|coexpression_cluster_id=C4092 | |||
|description=CAGE_peak_1_at_MN1_5end | |||
|id=chr22:28197702..28197758,- | |||
|ontology_enrichment_celltype=CL:0000860!1.09e-13!45;CL:0002057!3.15e-13!42;CL:0000057!7.47e-09!75;CL:0000055!4.97e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.78e-15;33!CL:0002057;3.78e-15;33!CL:0000473;2.86e-08;39!CL:0000234;2.86e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.28e-13,42;CL:0002057,3.28e-13,42;CL:0000473,6.98e-09,48;CL:0000234,6.98e-09,48;CL:0000057,1.56e-08,76 | |||
|ontology_enrichment_development_v019=CL:0002057;4.52e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!9.89e-21!659;UBERON:0000467!7.99e-17!625;UBERON:0000480!1.74e-16!626;UBERON:0000922!1.64e-15!612;UBERON:0002050!3.80e-14!605;UBERON:0005423!3.80e-14!605;UBERON:0000062!6.19e-14!511;UBERON:0000923!6.21e-14!604;UBERON:0005291!6.21e-14!604;UBERON:0006598!6.21e-14!604;UBERON:0002532!6.21e-14!604;UBERON:0000033!1.13e-13!123;UBERON:0000924!3.48e-13!173;UBERON:0006601!3.48e-13!173;UBERON:0000153!7.13e-13!129;UBERON:0007811!7.13e-13!129;UBERON:0004121!8.50e-13!169;UBERON:0002346!2.47e-10!90;UBERON:0003075!5.33e-10!86;UBERON:0007284!5.33e-10!86;UBERON:0000475!5.99e-10!365;UBERON:0005743!2.36e-09!86;UBERON:0001017!9.43e-09!82;UBERON:0002616!4.83e-08!59;UBERON:0000073!6.58e-08!94;UBERON:0001016!6.58e-08!94;UBERON:0000477!1.15e-07!286;UBERON:0001444!3.19e-07!48;UBERON:0003056!3.32e-07!61;UBERON:0000955!4.58e-07!69;UBERON:0006238!4.58e-07!69;UBERON:0001049!7.86e-07!57;UBERON:0005068!7.86e-07!57;UBERON:0006241!7.86e-07!57;UBERON:0007135!7.86e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002050,6.46e-14,564;UBERON:0000923,2.30e-13,560;UBERON:0010316,2.30e-13,560;UBERON:0005291,2.30e-13,560;UBERON:0006598,2.30e-13,560;UBERON:0010317,2.30e-13,560;UBERON:0002532,2.30e-13,560;UBERON:0000922,4.83e-13,592;UBERON:0004121,4.91e-13,171;UBERON:0000924,4.91e-13,171;UBERON:0006601,4.91e-13,171;UBERON:0010314,2.11e-11,132;UBERON:0005423,2.81e-11,581;UBERON:0002346,1.74e-10,86;UBERON:0003075,3.78e-10,82;UBERON:0007284,3.78e-10,82;UBERON:0010371,2.88e-09,104;UBERON:0001017,1.95e-08,81;UBERON:0003056,2.78e-07,61;UBERON:0000073,3.33e-07,53;UBERON:0002616,3.33e-07,53;UBERON:0001049,3.89e-07,56;UBERON:0005068,3.89e-07,56;UBERON:0006241,3.89e-07,56;UBERON:0007135,3.89e-07,56;UBERON:0001016,4.31e-07,89;UBERON:0001444,5.54e-07,49;UBERON:0000033,5.56e-07,56;UBERON:0000955,7.17e-07,68;UBERON:0006238,7.17e-07,68 | |||
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| ||
|short_description=p1@MN1 | |||
}} | }} |
Latest revision as of 14:18, 19 September 2015
Short description: | p1@MN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MN1_5end |
Coexpression cluster: | C4092_occipital_duodenum_temporal_parietal_Fibroblast_Neural_Multipotent |
Association with transcript: | -216bp_to_ENST00000302326, NM_002430, uc003adj.2_5end |
EntrezGene: | MN1 |
HGNC: | 7180 |
UniProt: | Q10571 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.28e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.28e-13 | 42 |
defensive cell | 6.98e-09 | 48 |
phagocyte | 6.98e-09 | 48 |
fibroblast | 1.56e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
embryonic structure | 6.46e-14 | 564 |
germ layer | 2.30e-13 | 560 |
germ layer / neural crest | 2.30e-13 | 560 |
embryonic tissue | 2.30e-13 | 560 |
presumptive structure | 2.30e-13 | 560 |
germ layer / neural crest derived structure | 2.30e-13 | 560 |
epiblast (generic) | 2.30e-13 | 560 |
embryo | 4.83e-13 | 592 |
ectoderm-derived structure | 4.91e-13 | 171 |
ectoderm | 4.91e-13 | 171 |
presumptive ectoderm | 4.91e-13 | 171 |
structure with developmental contribution from neural crest | 2.11e-11 | 132 |
developing anatomical structure | 2.81e-11 | 581 |
neurectoderm | 1.74e-10 | 86 |
neural plate | 3.78e-10 | 82 |
presumptive neural plate | 3.78e-10 | 82 |
ecto-epithelium | 2.88e-09 | 104 |
central nervous system | 1.95e-08 | 81 |
pre-chordal neural plate | 2.78e-07 | 61 |
regional part of nervous system | 3.33e-07 | 53 |
regional part of brain | 3.33e-07 | 53 |
neural tube | 3.89e-07 | 56 |
neural rod | 3.89e-07 | 56 |
future spinal cord | 3.89e-07 | 56 |
neural keel | 3.89e-07 | 56 |
nervous system | 4.31e-07 | 89 |
subdivision of head | 5.54e-07 | 49 |
head | 5.56e-07 | 56 |
brain | 7.17e-07 | 68 |
future brain | 7.17e-07 | 68 |