FFCP PHASE1:Hg19::chr18:47340320..47340479,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677769 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=32574 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_003003,uc002ldy.1_5end | |||
|cluster_id=chr18:47340320..47340479,+ | |||
|coexpression_cluster_id=C2461 | |||
|description=CAGE_peak_1_at_SCARNA17_5end | |||
|id=chr18:47340320..47340479,+ | |||
|ontology_enrichment_celltype=CL:0000791!5.09e-13!18;CL:0000789!5.09e-13!18;CL:0002420!5.09e-13!18;CL:0002419!5.09e-13!18;CL:0000790!5.09e-13!18;CL:0000625!7.10e-09!11;CL:0000084!6.76e-08!25;CL:0000827!6.76e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.08e-13;18!CL:0000789;5.08e-13;18!CL:0002419;5.08e-13;18!CL:0000625;7.10e-09;11!CL:0000084;6.74e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.09e-13,18;CL:0000789,5.09e-13,18;CL:0002420,5.09e-13,18;CL:0002419,5.09e-13,18;CL:0000790,5.09e-13,18;CL:0000625,7.10e-09,11;CL:0000084,6.74e-08,25;CL:0000827,6.74e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;5.08e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.78e-31!115;UBERON:0001049!6.90e-11!57;UBERON:0005068!6.90e-11!57;UBERON:0006241!6.90e-11!57;UBERON:0007135!6.90e-11!57;UBERON:0003080!1.01e-08!42;UBERON:0002616!1.02e-08!59;UBERON:0002780!1.85e-08!41;UBERON:0001890!1.85e-08!41;UBERON:0006240!1.85e-08!41;UBERON:0000178!2.91e-08!15;UBERON:0000179!2.91e-08!15;UBERON:0000463!2.91e-08!15;UBERON:0001017!8.13e-08!82;UBERON:0000955!2.09e-07!69;UBERON:0006238!2.09e-07!69;UBERON:0005743!2.21e-07!86;UBERON:0002346!3.52e-07!90;UBERON:0003075!4.36e-07!86;UBERON:0007284!4.36e-07!86;UBERON:0001893!9.42e-07!34;UBERON:0002020!9.48e-07!34;UBERON:0003528!9.48e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.53e-08;114!UBERON:0000178;2.90e-08;15!UBERON:0000179;2.90e-08;15!UBERON:0000463;2.90e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.48e-31,114;UBERON:0001049,1.28e-10,56;UBERON:0005068,1.28e-10,56;UBERON:0006241,1.28e-10,56;UBERON:0007135,1.28e-10,56;UBERON:0000073,8.94e-10,53;UBERON:0002616,8.94e-10,53;UBERON:0002780,1.85e-08,41;UBERON:0001890,1.85e-08,41;UBERON:0003080,1.85e-08,41;UBERON:0006240,1.85e-08,41;UBERON:0000178,2.91e-08,15;UBERON:0000179,2.91e-08,15;UBERON:0000463,2.91e-08,15;UBERON:0001017,1.36e-07,81;UBERON:0002346,1.36e-07,86;UBERON:0003075,1.65e-07,82;UBERON:0007284,1.65e-07,82;UBERON:0000955,3.53e-07,68;UBERON:0006238,3.53e-07,68;UBERON:0001893,9.42e-07,34;UBERON:0003528,9.48e-07,34;UBERON:0002020,9.48e-07,34 | |||
|phase1_expression=281.056452731551,272.335866389331,293.467069327812,358.262408104207,625.745532198203,376.850242411359,681.376672272755,607.714518236611,1086.53221331133,187.003525677648,743.158243890635,145.045071094434,169.602167000896,77.4777369529892,96.1052389610956,301.201665610395,261.569425162406,264.372252720229,295.199343268257,250.920716360494,225.828765207388,277.407428508108,253.318848610985,146.045011552767,183.919967006386,65.791942348986,61.985945034709,54.5465714503797,1597.84569256025,3034.93905075466,827.182546877794,330.072219587935,179.518727591837,243.298138689746,44.9309763365749,258.748003127107,547.271218920155,1222.66786662985,630.511742846125,1261.26718060053,190.328153103936,382.194525902396,167.93927009749,210.827446230369,191.583103450226,136.817410509928,230.802033647345,243.822557596943,208.7420939833,279.63700533713,231.056957289249,251.617092601455,327.508396699788,221.401246469252,291.166946177835,228.33795786518,187.759431239798,231.240465493992,378.013607078065,350.77542659417,256.374187445416,238.152638734809,186.697983533847,161.965405202424,369.726570012816,349.509298409742,241.655032610283,297.729668329241,256.048112944319,286.037708476639,363.845101082655,431.989667013413,354.437873933791,138.583467820634,173.27250447151,234.608024323873,153.777896039552,165.044405232815,116.526050355383,388.187356975581,205.878760901058,248.971241581196,670.54569139764,628.059402951451,685.811634728801,396.432376764285,614.607840100279,488.539573961311,712.606372862081,794.726777527958,272.653012203426,295.380306253582,266.82671323141,607.988111463519,2534.61972180251,316.324285814868,2260.9820976884,2187.8909162246,1347.71782594178,1147.06654487544,3737.67655375401,3778.11348976317,2396.36875941731,740.322486001978,1146.01698007712,1153.97005688608,817.015256979052,733.066622790039,769.561159511799,1179.51308972217,1090.75352020074,958.378804525819,1553.15346255942,1394.69033683167,1287.87765327731,783.420795410973,2542.66797504875,2269.31564996729,1408.05458608853,3719.25121223383,4624.64577274214,5790.1538547795,3208.00291195195,3213.48783286514,2797.19896750702,3700.59167219594,5208.4148844702,3424.08892692886,2935.95846931134,3525.60528812286,109.713089841283,192.491146734944,73.2652479363429,331.801141889032,486.799111227449,231.319890780435,165.419476986629,547.950863960768,198.995790130363,213.081950961524,228.370442802128,711.674806716822,244.806433732588,212.459485715478,265.479768009531,227.065177438244,197.97440321259,344.141970872608,456.451938802542,466.922079171263,148.475518302929,128.174954670813,152.047539704126,146.980064900242,130.044825225071,91.6143079660425,138.981652746979,164.353058831693,173.258169928428,129.871597752692,177.244899528025,219.71863855265,137.406938399619,101.47501017546,167.699383211524,101.533791058999,145.94409220701,113.174537885739,364.893597168802,237.316414892032,150.408631766864,475.727306944188,558.403580373589,262.964713441948,272.83760148073,129.036491386207,1441.27393315189,789.087543679987,169.531486690815,220.906974456069,320.246987189115,158.1138985354,193.573264018655,228.8734318464,180.461941037258,261.848349825731,207.99950873728,121.144180258073,108.943866813782,105.537286985723,93.4054253448757,115.672981164108,115.415409334478,121.770849410849,79.4159726181535,118.289447571233,104.875667893402,102.168245726257,118.935392982986,141.075011100394,184.684862446773,97.4666099794043,106.600978930913,52.9192460574789,100.525875181712,130.257313214583,130.857349307646,96.1904913196978,357.702933563591,206.723552376373,208.540990741009,562.970896254339,185.597605158428,645.389552814301,161.363314439488,666.666512353002,168.078833903068,547.528856335484,187.229493838437,345.437623421801,416.781261614505,123.119064034176,113.436036255716,88.1269490424634,103.643525824517,42.4470801175726,276.758339208052,258.565577995218,229.831618995907,262.366130243903,241.975695989728,185.773475769597,143.933569743431,108.064477616405,331.523811245953,217.324190318966,153.038450113952,329.839358511085,288.279820033554,227.273401180124,340.367199852168,303.941824508907,272.386670739539,507.100549990378,498.598742883504,448.230437842545,228.090035479016,267.861787964582,237.478204538218,364.581604236144,1168.68142105728,649.648790223911,1237.70485449754,0.441463099414651,218.796432168199,132.278781740163,107.335779129636,422.63059224865,155.719378265616,71.1079258817507,139.771762978129,153.910348221378,157.321162807548,169.258391263612,133.728502734601,102.067078567079,116.672349169306,74.1991193714933,153.299653204099,123.622007341662,109.566567708892,95.0057316465305,97.5020424614057,99.3578640259836,133.881756174491,104.630021764881,88.3047033850084,77.0179937061999,165.621317399371,352.746878333496,566.59167287511,1465.80977687326,1124.85623641938,1040.61637873365,104.644529793495,279.233539083101,387.989750265256,352.409238806773,166.066400715867,155.878047020993,190.646230564596,128.838615912819,141.251062301983,43.0495737768977,188.21961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| |||
|short_description=p1@SCARNA17 | |||
}} |
Latest revision as of 17:57, 19 September 2015
Short description: | p1@SCARNA17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCARNA17_5end |
Coexpression cluster: | C2461_CD8_CD4_Natural_Basophils_CD34_Mesenchymal_uterus |
Association with transcript: | 0bp_to_NR_003003, uc002ldy.1_5end |
EntrezGene: | SCARNA17 |
HGNC: | 32574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.09e-13 | 18 |
alpha-beta T cell | 5.09e-13 | 18 |
immature T cell | 5.09e-13 | 18 |
mature T cell | 5.09e-13 | 18 |
immature alpha-beta T cell | 5.09e-13 | 18 |
CD8-positive, alpha-beta T cell | 7.10e-09 | 11 |
T cell | 6.74e-08 | 25 |
pro-T cell | 6.74e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.48e-31 | 114 |
neural tube | 1.28e-10 | 56 |
neural rod | 1.28e-10 | 56 |
future spinal cord | 1.28e-10 | 56 |
neural keel | 1.28e-10 | 56 |
regional part of nervous system | 8.94e-10 | 53 |
regional part of brain | 8.94e-10 | 53 |
regional part of forebrain | 1.85e-08 | 41 |
forebrain | 1.85e-08 | 41 |
anterior neural tube | 1.85e-08 | 41 |
future forebrain | 1.85e-08 | 41 |
blood | 2.91e-08 | 15 |
haemolymphatic fluid | 2.91e-08 | 15 |
organism substance | 2.91e-08 | 15 |
central nervous system | 1.36e-07 | 81 |
neurectoderm | 1.36e-07 | 86 |
neural plate | 1.65e-07 | 82 |
presumptive neural plate | 1.65e-07 | 82 |
brain | 3.53e-07 | 68 |
future brain | 3.53e-07 | 68 |
telencephalon | 9.42e-07 | 34 |
brain grey matter | 9.48e-07 | 34 |
gray matter | 9.48e-07 | 34 |