FFCP PHASE1:Hg19::chr3:87040259..87040277,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |EntrezGene=389136 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |HGNC=24327 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000383698_5end | |association_with_transcript=0bp_to_ENST00000383698_5end | ||
|cluster_id=chr3:87040259..87040277,- | |||
|coexpression_cluster_id=C1930 | |coexpression_cluster_id=C1930 | ||
|description=CAGE_peak_1_at_VGLL3_5end | |description=CAGE_peak_1_at_VGLL3_5end | ||
|id=chr3:87040259..87040277,- | |id=chr3:87040259..87040277,- | ||
|ontology_enrichment_celltype=CL:0000055!3.37e-22!180;CL:0000057!9.42e-21!75;CL:0002620!3.82e-10!23;CL:0000680!2.16e-08!57;CL:0000056!2.16e-08!57;CL:0000355!2.16e-08!57;CL:0000136!9.38e-08!15;CL:0000187!2.09e-07!54;CL:0000183!4.93e-07!59 | |ontology_enrichment_celltype=CL:0000055!3.37e-22!180;CL:0000057!9.42e-21!75;CL:0002620!3.82e-10!23;CL:0000680!2.16e-08!57;CL:0000056!2.16e-08!57;CL:0000355!2.16e-08!57;CL:0000136!9.38e-08!15;CL:0000187!2.09e-07!54;CL:0000183!4.93e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002620;9.82e-11;23!CL:0000349;1.31e-09;19!CL:0000057;4.23e-09;73!CL:0000134;4.46e-08;55!CL:0000136;1.10e-07;13!CL:0000723;1.64e-07;61!CL:0002320;2.84e-07;188!CL:0000048;4.13e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.63e-23,76;CL:0002620,1.01e-10,23;CL:0000349,1.39e-09,19;CL:0000680,1.80e-08,58;CL:0000056,1.80e-08,58;CL:0000355,1.80e-08,58;CL:0000136,3.58e-08,15;CL:0000187,1.91e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.31e-14!95;UBERON:0000914!1.89e-12!83;UBERON:0002329!1.89e-12!83;UBERON:0003077!1.89e-12!83;UBERON:0003059!1.89e-12!83;UBERON:0007282!1.89e-12!83;UBERON:0009618!1.89e-12!83;UBERON:0007285!1.89e-12!83;UBERON:0000475!4.00e-12!365;UBERON:0004923!1.24e-11!57;UBERON:0000481!3.71e-11!347;UBERON:0000486!3.85e-11!82;UBERON:0005256!4.03e-11!143;UBERON:0003104!5.32e-11!238;UBERON:0009142!5.32e-11!238;UBERON:0002100!5.92e-11!216;UBERON:0004290!1.58e-10!70;UBERON:0000478!2.87e-10!24;UBERON:0000468!4.18e-10!659;UBERON:0002199!1.43e-09!45;UBERON:0002416!1.43e-09!45;UBERON:0002385!4.31e-09!63;UBERON:0001015!4.31e-09!63;UBERON:0000383!4.31e-09!63;UBERON:0005631!7.01e-09!14;UBERON:0000158!7.01e-09!14;UBERON:0001134!7.10e-09!61;UBERON:0002036!7.10e-09!61;UBERON:0003082!7.10e-09!61;UBERON:0004119!2.95e-08!169;UBERON:0000925!2.95e-08!169;UBERON:0006595!2.95e-08!169;UBERON:0002097!3.32e-08!40;UBERON:0000064!2.50e-07!219;UBERON:0000467!7.75e-07!625 | |ontology_enrichment_uberon=UBERON:0003102!1.31e-14!95;UBERON:0000914!1.89e-12!83;UBERON:0002329!1.89e-12!83;UBERON:0003077!1.89e-12!83;UBERON:0003059!1.89e-12!83;UBERON:0007282!1.89e-12!83;UBERON:0009618!1.89e-12!83;UBERON:0007285!1.89e-12!83;UBERON:0000475!4.00e-12!365;UBERON:0004923!1.24e-11!57;UBERON:0000481!3.71e-11!347;UBERON:0000486!3.85e-11!82;UBERON:0005256!4.03e-11!143;UBERON:0003104!5.32e-11!238;UBERON:0009142!5.32e-11!238;UBERON:0002100!5.92e-11!216;UBERON:0004290!1.58e-10!70;UBERON:0000478!2.87e-10!24;UBERON:0000468!4.18e-10!659;UBERON:0002199!1.43e-09!45;UBERON:0002416!1.43e-09!45;UBERON:0002385!4.31e-09!63;UBERON:0001015!4.31e-09!63;UBERON:0000383!4.31e-09!63;UBERON:0005631!7.01e-09!14;UBERON:0000158!7.01e-09!14;UBERON:0001134!7.10e-09!61;UBERON:0002036!7.10e-09!61;UBERON:0003082!7.10e-09!61;UBERON:0004119!2.95e-08!169;UBERON:0000925!2.95e-08!169;UBERON:0006595!2.95e-08!169;UBERON:0002097!3.32e-08!40;UBERON:0000064!2.50e-07!219;UBERON:0000467!7.75e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;7.72e-11;24!UBERON:0002384;8.57e-08;198!UBERON:0005631;1.26e-07;10!UBERON:0000158;1.26e-07;10!UBERON:0002199;7.19e-07;46!UBERON:0002416;7.19e-07;46!UBERON:0002097;8.77e-07;41 | |||
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|phase1_expression=53.5951218848142,56.3084377833286,96.5537668057402,38.0278533741896,46.4839538204379,36.6382180122155,12.6649939084155,6.94891860769514,37.8719160889766,9.09215565055583,2.79120467188971,31.4555575867448,23.2114940841039,11.0152054134441,16.5698687863958,2.01697543935533,1.20538905604795,1.46062018077475,1.46379839637152,2.33930010345897,7.54802557603736,2.82109249330279,4.00730381983479,1.64249310087461,8.53689949244659,0,0,0,0,0,2.01260960310899,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,4.02420515822182,31.0706025279779,1.44575660953827,16.0428131403485,11.0083354410226,0.795285947051099,0.973269740605272,6.99557647014102,13.747222642679,22.0465312089746,8.05521314310933,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0,0,0.208994966536811,0.258416759169329,2.13459757612026,1.33888245105868,0,0,0.24406205754817,0.367663080345869,1.62028389576352,0.892997282840798,0.673588117878509,1.12611480483322,0,0,0.366403487860815,0,0,1.3082821564276,94.4246708221105,10.1304409331664,27.805927970776,12.9076479336966,11.3493882303474,15.6989728039846,4.2699598291882,2.71334303258876,29.8762593983776,7.13966561969347,5.23078089963068,12.7140239221742,16.13292588544,8.43557154601668,11.2377627658915,2.85235910772225,20.4744692355967,5.28455243896942,9.71237666208789,7.30344194851692,18.7821837554502,5.28187564440602,28.3112640421597,85.5362057243079,89.0160945402805,20.0235499626366,21.5585442544872,6.56510844420858,11.7611408679646,40.1742967452065,37.3130977748712,96.8501434724902,48.6771310857374,6.01190570748112,29.2405106172845,123.436170737132,153.014832637204,18.0054657650641,83.4725486831355,36.5849566864793,58.8129266007824,17.5527385530917,24.5541253006221,55.7878641079493,199.932379851074,41.219744488797,22.7206139210633,23.4752388870402,31.3687095774402,2.31913023795956,1.63647672354501,0.860413786167011,0.365921118388786,0.530119073285941,0.464775771478074,1.14027160516907,1.26160425437814,0.72995471815166,40.6768784057521,57.2484434991668,1.38134921352481,106.340255519323,85.9036583186807,11.8306800039844,8.59781919398319,11.5685294344071,10.4779274095774,10.4582133164355,9.96536600266606,10.1123481120123,8.82996593064057,7.31019598198142,1.4763109092493,8.41450642820675,13.1703683626048,17.641045366265,0,0,0,0,11.3149363459664,14.2401282547776,1.09750285408626,0,0.402115889646523,1.38882667737794,3.58389135841357,4.15973914111831,8.6598805215164,0.927443239800615,35.4574256592181,0,0,0.190254152234598,0,0,0,0,0.148631162288728,0,3.02367830757947,0.141775097242386,0.716468181622786,0.871901815541886,0.766765358330422,0,0,0.414656231081544,0,0.6312121671319,0.190493682876507,0,0,11.9750712215894,0.514137463516618,0,0,5.7186853016134,17.8743628221645,13.4209063052339,13.0564432915356,53.6484668777824,19.441963308788,43.081974886749,26.0018592278415,5.14414748524284,8.5109479213967,6.66055447540248,40.8917061862302,6.51145926469732,6.58592269424615,6.5147236858747,33.0514512330568,3.95975936466715,11.4546963282643,9.58686804460323,17.49527345686,0,0,0,28.7549826589899,27.5668646001873,4.27910715122155,24.757603440156,19.9312032873872,31.6937904934615,0,0,0,0,1.52456774533478,1.30139853857622,0,0.335032530668698,0,0,0,0,30.672872929785,37.0126185584161,23.3287920381773,64.0550253514886,68.6951606869073,60.8731322030988,69.9334247506498,39.7248851640589,18.1926003244788,24.8335371102012,19.9267679560631,16.0401176631282,74.7199084425513,2.93701736194111,5.14715135716284,0,0,0,19.4001645725606,13.3148351608398,29.6342487463087,64.508030032882,20.8708283671765,27.5046892544412,90.5943785237806,69.5921858730717,42.1437273396252,14.8418066444991,13.7246627484363,19.8869132350702,6.73442679313235,1.03850885836724,6.97262270759755,4.95523743325651,2.00506470303285,1.47329582297434,5.28146461557191,7.82992022428883,9.70320670699738,1.80479845162965,7.62451837333706,1.56869953835371,0,3.37765212457202,0,0,1.94324324491925,0,3.25135725052623,2.00675909541941,2.80363900349542,0.831076008928724,1.56712328305525,0,0,0,2.29610251989794,5.20605431462885,108.811308299995,0.27470839445503,0,5.16838984196555,2.60024098414608,46.5983396548063,8.60369392799886,16.1751047970377,22.7185438594672,13.507984103484,42.9680979473095,33.4988562941868,24.7157219506693,30.5379882268309,0.826424576804891,1.72971060628596,1.53135254993501,2.93357564481095,10.2266020845403,15.4258049947014,2.7881490806424,0,1.06461206063404,0.869932992075073,2.22389062924704,0.858749320451947,13.7698596663077,45.8750165842153,104.274716076332,14.3302763134347,17.1175595213568,10.8189104294818,1.56989728039846,56.1202067659942,34.0425916872708,29.5709129887673,1.41527737101321,1.58510321173008,0.842516912477962,14.6290121726877,2.68084838594413,0,10.5104931784149,13.5749214675564,7.910568163417,6.616384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| ||
|short_description=p1@VGLL3 | |short_description=p1@VGLL3 | ||
}} | }} |
Latest revision as of 18:25, 19 September 2015
Short description: | p1@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VGLL3_5end |
Coexpression cluster: | C1930_placenta_Fibroblast_amniotic_chorionic_bronchogenic_Hair_bone |
Association with transcript: | 0bp_to_ENST00000383698_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.63e-23 | 76 |
skin fibroblast | 1.01e-10 | 23 |
extraembryonic cell | 1.39e-09 | 19 |
muscle precursor cell | 1.80e-08 | 58 |
myoblast | 1.80e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.80e-08 | 58 |
fat cell | 3.58e-08 | 15 |
muscle cell | 1.91e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 6.67e-13 | 99 |
organ component layer | 7.88e-13 | 66 |
multilaminar epithelium | 3.27e-11 | 83 |
extraembryonic structure | 7.42e-11 | 24 |
mesenchyme | 9.70e-11 | 160 |
entire embryonic mesenchyme | 9.70e-11 | 160 |
dense mesenchyme tissue | 9.78e-11 | 73 |
somite | 9.82e-11 | 71 |
presomitic mesoderm | 9.82e-11 | 71 |
presumptive segmental plate | 9.82e-11 | 71 |
dermomyotome | 9.82e-11 | 71 |
trunk paraxial mesoderm | 9.82e-11 | 71 |
paraxial mesoderm | 2.74e-10 | 72 |
presumptive paraxial mesoderm | 2.74e-10 | 72 |
trunk mesenchyme | 3.22e-10 | 122 |
integument | 6.50e-10 | 46 |
integumental system | 6.50e-10 | 46 |
epithelial vesicle | 2.08e-09 | 78 |
extraembryonic membrane | 2.25e-09 | 14 |
membranous layer | 2.25e-09 | 14 |
muscle tissue | 3.22e-09 | 64 |
musculature | 3.22e-09 | 64 |
musculature of body | 3.22e-09 | 64 |
trunk | 3.59e-09 | 199 |
skeletal muscle tissue | 5.50e-09 | 62 |
striated muscle tissue | 5.50e-09 | 62 |
myotome | 5.50e-09 | 62 |
endoderm-derived structure | 1.02e-08 | 160 |
endoderm | 1.02e-08 | 160 |
presumptive endoderm | 1.02e-08 | 160 |
skin of body | 1.82e-08 | 41 |
digestive system | 5.14e-07 | 145 |
digestive tract | 5.14e-07 | 145 |
primitive gut | 5.14e-07 | 145 |