FFCP PHASE1:Hg19::chr10:89577910..89578010,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:89577910..89578010,-
|short_description=p1@ATAD1
|description=CAGE_peak_1_at_ATAD1_5end
|association_with_transcript=0bp_to_ENST00000308448,ENST0000047814...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84896 | |EntrezGene=84896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25903 | |HGNC=25903 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NBU5 | |UniProt=Q8NBU5 | ||
|association_with_transcript=0bp_to_ENST00000308448,ENST00000478142,ENST00000541004,NM_032810,uc001kez.1_5end | |||
|cluster_id=chr10:89577910..89578010,- | |||
|description=CAGE_peak_1_at_ATAD1_5end | |||
|id=chr10:89577910..89578010,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.79e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.49e-18!115;UBERON:0000073!3.45e-15!94;UBERON:0001016!3.45e-15!94;UBERON:0005743!2.97e-14!86;UBERON:0001017!3.91e-14!82;UBERON:0001049!6.69e-14!57;UBERON:0005068!6.69e-14!57;UBERON:0006241!6.69e-14!57;UBERON:0007135!6.69e-14!57;UBERON:0002780!4.46e-13!41;UBERON:0001890!4.46e-13!41;UBERON:0006240!4.46e-13!41;UBERON:0003080!1.91e-12!42;UBERON:0002616!9.57e-12!59;UBERON:0000955!1.11e-11!69;UBERON:0006238!1.11e-11!69;UBERON:0001893!4.57e-10!34;UBERON:0002020!5.46e-10!34;UBERON:0003528!5.46e-10!34;UBERON:0001869!6.19e-10!32;UBERON:0003075!8.91e-10!86;UBERON:0007284!8.91e-10!86;UBERON:0002791!1.54e-09!33;UBERON:0002346!2.03e-09!90;UBERON:0004121!2.05e-09!169;UBERON:0000924!2.99e-09!173;UBERON:0006601!2.99e-09!173;UBERON:0000153!4.06e-09!129;UBERON:0007811!4.06e-09!129;UBERON:0002619!8.52e-09!22;UBERON:0000033!1.63e-08!123;UBERON:0001950!3.00e-08!20;UBERON:0000956!1.46e-07!25;UBERON:0000203!1.46e-07!25;UBERON:0003056!4.05e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.80e-09;41!UBERON:0001890;1.80e-09;41!UBERON:0001869;4.54e-09;32!UBERON:0001893;8.12e-09;34!UBERON:0002619;8.29e-09;22!UBERON:0002791;8.71e-09;32!UBERON:0003528;8.79e-09;34!UBERON:0002020;8.79e-09;34!UBERON:0000073;2.32e-08;53!UBERON:0002616;2.32e-08;53!UBERON:0001950;3.00e-08;20!UBERON:0000956;1.39e-07;25!UBERON:0000203;1.39e-07;25!UBERON:0001017;5.06e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.06e-18,114;UBERON:0001016,1.76e-15,89;UBERON:0001017,1.43e-14,81;UBERON:0001049,1.86e-14,56;UBERON:0005068,1.86e-14,56;UBERON:0006241,1.86e-14,56;UBERON:0007135,1.86e-14,56;UBERON:0000073,1.65e-13,53;UBERON:0002616,1.65e-13,53;UBERON:0002780,4.46e-13,41;UBERON:0001890,4.46e-13,41;UBERON:0003080,4.46e-13,41;UBERON:0006240,4.46e-13,41;UBERON:0000955,4.18e-12,68;UBERON:0006238,4.18e-12,68;UBERON:0011216,8.04e-11,223;UBERON:0001893,4.57e-10,34;UBERON:0003528,5.46e-10,34;UBERON:0002020,5.46e-10,34;UBERON:0001869,6.19e-10,32;UBERON:0002791,1.47e-09,32;UBERON:0004121,2.72e-09,171;UBERON:0000924,2.72e-09,171;UBERON:0006601,2.72e-09,171;UBERON:0003075,2.72e-09,82;UBERON:0007284,2.72e-09,82;UBERON:0002346,6.15e-09,86;UBERON:0002619,8.52e-09,22;UBERON:0001950,3.00e-08,20;UBERON:0000956,1.46e-07,25;UBERON:0000203,1.46e-07,25;UBERON:0010371,1.66e-07,104;UBERON:0003056,3.29e-07,61 | |||
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| ||
|short_description=p1@ATAD1 | |||
}} | }} |
Latest revision as of 18:56, 19 September 2015
Short description: | p1@ATAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000308448, ENST00000478142, ENST00000541004, NM_032810, uc001kez.1_5end |
EntrezGene: | ATAD1 |
HGNC: | 25903 |
UniProt: | Q8NBU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.06e-18 | 114 |
nervous system | 1.76e-15 | 89 |
central nervous system | 1.43e-14 | 81 |
neural tube | 1.86e-14 | 56 |
neural rod | 1.86e-14 | 56 |
future spinal cord | 1.86e-14 | 56 |
neural keel | 1.86e-14 | 56 |
regional part of nervous system | 1.65e-13 | 53 |
regional part of brain | 1.65e-13 | 53 |
regional part of forebrain | 4.46e-13 | 41 |
forebrain | 4.46e-13 | 41 |
anterior neural tube | 4.46e-13 | 41 |
future forebrain | 4.46e-13 | 41 |
brain | 4.18e-12 | 68 |
future brain | 4.18e-12 | 68 |
organ system subdivision | 8.04e-11 | 223 |
telencephalon | 4.57e-10 | 34 |
brain grey matter | 5.46e-10 | 34 |
gray matter | 5.46e-10 | 34 |
cerebral hemisphere | 6.19e-10 | 32 |
regional part of telencephalon | 1.47e-09 | 32 |
ectoderm-derived structure | 2.72e-09 | 171 |
ectoderm | 2.72e-09 | 171 |
presumptive ectoderm | 2.72e-09 | 171 |
neural plate | 2.72e-09 | 82 |
presumptive neural plate | 2.72e-09 | 82 |
neurectoderm | 6.15e-09 | 86 |
regional part of cerebral cortex | 8.52e-09 | 22 |
neocortex | 3.00e-08 | 20 |
cerebral cortex | 1.46e-07 | 25 |
pallium | 1.46e-07 | 25 |
ecto-epithelium | 1.66e-07 | 104 |
pre-chordal neural plate | 3.29e-07 | 61 |