FFCP PHASE1:Hg19::chr5:121414152..121414179,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4015 | |EntrezGene=4015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |HGNC=6664 | ||
|TSSclassifier=strong | |||
|UniProt=D0PNI2,P28300 | |UniProt=D0PNI2,P28300 | ||
|association_with_transcript=-97bp_to_NM_002317,uc003ksu.2_5end | |association_with_transcript=-97bp_to_NM_002317,uc003ksu.2_5end | ||
|cluster_id=chr5:121414152..121414179,- | |||
|coexpression_cluster_id=C421 | |coexpression_cluster_id=C421 | ||
|description=CAGE_peak_10_at_LOX_5end | |description=CAGE_peak_10_at_LOX_5end | ||
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|ontology_enrichment_celltype=CL:0000055!1.09e-38!180;CL:0000057!2.27e-23!75;CL:0002620!3.71e-14!23;CL:0000680!6.73e-13!57;CL:0000056!6.73e-13!57;CL:0000355!6.73e-13!57;CL:0000048!1.49e-12!430;CL:0000192!5.82e-12!42;CL:0000514!5.82e-12!42;CL:0000144!6.22e-12!625;CL:0000723!9.32e-12!436;CL:0000187!1.24e-11!54;CL:0000359!3.80e-11!32;CL:0000222!5.09e-11!119;CL:0000034!9.53e-11!444;CL:0000183!2.70e-10!59;CL:0000548!2.78e-10!679;CL:0000004!2.78e-10!679;CL:0000255!2.78e-10!679;CL:0000393!4.58e-10!60;CL:0000211!4.58e-10!60;CL:0000012!6.03e-10!682;CL:0002371!1.24e-09!591;CL:0002334!3.16e-09!12 | |ontology_enrichment_celltype=CL:0000055!1.09e-38!180;CL:0000057!2.27e-23!75;CL:0002620!3.71e-14!23;CL:0000680!6.73e-13!57;CL:0000056!6.73e-13!57;CL:0000355!6.73e-13!57;CL:0000048!1.49e-12!430;CL:0000192!5.82e-12!42;CL:0000514!5.82e-12!42;CL:0000144!6.22e-12!625;CL:0000723!9.32e-12!436;CL:0000187!1.24e-11!54;CL:0000359!3.80e-11!32;CL:0000222!5.09e-11!119;CL:0000034!9.53e-11!444;CL:0000183!2.70e-10!59;CL:0000548!2.78e-10!679;CL:0000004!2.78e-10!679;CL:0000255!2.78e-10!679;CL:0000393!4.58e-10!60;CL:0000211!4.58e-10!60;CL:0000012!6.03e-10!682;CL:0002371!1.24e-09!591;CL:0002334!3.16e-09!12 | ||
|ontology_enrichment_celltype_v019=CL:0002334;9.16e-19;12!CL:0002620;1.49e-15;23!CL:0000057;3.01e-10;73!CL:1000306;1.02e-09;4!CL:0002547;1.02e-09;4!CL:0002580;3.25e-07;3!CL:0002579;5.35e-07;3!CL:0002539;6.21e-07;10 | |ontology_enrichment_celltype_v019=CL:0002334;9.16e-19;12!CL:0002620;1.49e-15;23!CL:0000057;3.01e-10;73!CL:1000306;1.02e-09;4!CL:0002547;1.02e-09;4!CL:0002580;3.25e-07;3!CL:0002579;5.35e-07;3!CL:0002539;6.21e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.56e-29,76;CL:0002334,3.53e-19,12;CL:0002620,9.43e-16,23;CL:0000048,1.23e-10,427;CL:0000723,3.10e-10,433;CL:0000034,1.02e-09,441;CL:1000306,1.95e-09,4;CL:0002547,1.95e-09,4;CL:0000219,6.55e-08,386;CL:0000134,6.59e-08,354;CL:0002580,1.68e-07,3;CL:0002320,1.77e-07,361;CL:0002579,3.99e-07,3;CL:0002539,6.14e-07,10 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!3.33e-08!14 | |ontology_enrichment_disease=DOID:2394!3.33e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.10e-10;14!DOID:17;1.75e-07;5!DOID:450;1.75e-07;5!DOID:66;1.75e-07;5!DOID:423;1.75e-07;5!DOID:0080000;1.75e-07;5!DOID:11722;1.75e-07;5 | |ontology_enrichment_disease_v019=DOID:2394;1.10e-10;14!DOID:17;1.75e-07;5!DOID:450;1.75e-07;5!DOID:66;1.75e-07;5!DOID:423;1.75e-07;5!DOID:0080000;1.75e-07;5!DOID:11722;1.75e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,6.69e-11,14;DOID:17,2.42e-07,5;DOID:450,2.42e-07,5;DOID:66,2.42e-07,5;DOID:423,2.42e-07,5;DOID:0080000,2.42e-07,5;DOID:11722,2.42e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.82e-13!83;UBERON:0002329!9.82e-13!83;UBERON:0003077!9.82e-13!83;UBERON:0003059!9.82e-13!83;UBERON:0007282!9.82e-13!83;UBERON:0009618!9.82e-13!83;UBERON:0007285!9.82e-13!83;UBERON:0004290!2.14e-12!70;UBERON:0001134!8.41e-12!61;UBERON:0002036!8.41e-12!61;UBERON:0003082!8.41e-12!61;UBERON:0002385!5.14e-11!63;UBERON:0001015!5.14e-11!63;UBERON:0000383!5.14e-11!63;UBERON:0001637!1.30e-10!42;UBERON:0003509!1.30e-10!42;UBERON:0004572!1.30e-10!42;UBERON:0000486!1.68e-10!82;UBERON:0002049!7.18e-10!79;UBERON:0007798!7.18e-10!79;UBERON:0004872!1.64e-09!84;UBERON:0004573!2.91e-09!33;UBERON:0004571!2.91e-09!33;UBERON:0005256!7.65e-09!143;UBERON:0002199!1.33e-08!45;UBERON:0002416!1.33e-08!45;UBERON:0000055!1.57e-08!69;UBERON:0002097!6.26e-08!40;UBERON:0001981!7.41e-08!60;UBERON:0007500!7.41e-08!60;UBERON:0004537!7.41e-08!60;UBERON:0006965!7.41e-08!60;UBERON:0004535!9.89e-08!110;UBERON:0001009!3.77e-07!113 | |ontology_enrichment_uberon=UBERON:0000914!9.82e-13!83;UBERON:0002329!9.82e-13!83;UBERON:0003077!9.82e-13!83;UBERON:0003059!9.82e-13!83;UBERON:0007282!9.82e-13!83;UBERON:0009618!9.82e-13!83;UBERON:0007285!9.82e-13!83;UBERON:0004290!2.14e-12!70;UBERON:0001134!8.41e-12!61;UBERON:0002036!8.41e-12!61;UBERON:0003082!8.41e-12!61;UBERON:0002385!5.14e-11!63;UBERON:0001015!5.14e-11!63;UBERON:0000383!5.14e-11!63;UBERON:0001637!1.30e-10!42;UBERON:0003509!1.30e-10!42;UBERON:0004572!1.30e-10!42;UBERON:0000486!1.68e-10!82;UBERON:0002049!7.18e-10!79;UBERON:0007798!7.18e-10!79;UBERON:0004872!1.64e-09!84;UBERON:0004573!2.91e-09!33;UBERON:0004571!2.91e-09!33;UBERON:0005256!7.65e-09!143;UBERON:0002199!1.33e-08!45;UBERON:0002416!1.33e-08!45;UBERON:0000055!1.57e-08!69;UBERON:0002097!6.26e-08!40;UBERON:0001981!7.41e-08!60;UBERON:0007500!7.41e-08!60;UBERON:0004537!7.41e-08!60;UBERON:0006965!7.41e-08!60;UBERON:0004535!9.89e-08!110;UBERON:0001009!3.77e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.02e-09;4!UBERON:0000415;1.02e-09;4!UBERON:0007240;1.02e-09;4!UBERON:0005742;1.02e-09;4!UBERON:0005734;1.02e-09;4!UBERON:0004664;1.02e-09;4!UBERON:0004663;1.02e-09;4!UBERON:0003688;4.92e-09;6!UBERON:0002358;4.92e-09;6!UBERON:0003684;4.92e-09;6!UBERON:0001178;4.92e-09;6!UBERON:0000947;2.29e-08;21!UBERON:0010191;2.29e-08;21!UBERON:0004457;4.24e-08;9!UBERON:0000042;4.24e-08;9!UBERON:0004573;5.83e-08;33!UBERON:0004571;5.83e-08;33!UBERON:0004237;6.21e-07;10!UBERON:0004695;6.21e-07;10!UBERON:0002111;6.21e-07;10!UBERON:0004178;6.21e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0004797;1.02e-09;4!UBERON:0000415;1.02e-09;4!UBERON:0007240;1.02e-09;4!UBERON:0005742;1.02e-09;4!UBERON:0005734;1.02e-09;4!UBERON:0004664;1.02e-09;4!UBERON:0004663;1.02e-09;4!UBERON:0003688;4.92e-09;6!UBERON:0002358;4.92e-09;6!UBERON:0003684;4.92e-09;6!UBERON:0001178;4.92e-09;6!UBERON:0000947;2.29e-08;21!UBERON:0010191;2.29e-08;21!UBERON:0004457;4.24e-08;9!UBERON:0000042;4.24e-08;9!UBERON:0004573;5.83e-08;33!UBERON:0004571;5.83e-08;33!UBERON:0004237;6.21e-07;10!UBERON:0004695;6.21e-07;10!UBERON:0002111;6.21e-07;10!UBERON:0004178;6.21e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.95e-09,4;UBERON:0007240,1.95e-09,4;UBERON:0005742,1.95e-09,4;UBERON:0005734,1.95e-09,4;UBERON:0004664,1.95e-09,4;UBERON:0004663,1.95e-09,4;UBERON:0004573,3.39e-09,33;UBERON:0004571,3.39e-09,33;UBERON:0003688,4.71e-09,6;UBERON:0002358,4.71e-09,6;UBERON:0003684,4.71e-09,6;UBERON:0001178,4.71e-09,6;UBERON:0001637,8.92e-09,42;UBERON:0003509,8.92e-09,42;UBERON:0004572,8.92e-09,42;UBERON:0000947,2.95e-08,21;UBERON:0010191,2.95e-08,21;UBERON:0002199,3.46e-08,46;UBERON:0002416,3.46e-08,46;UBERON:0002384,5.97e-08,371;UBERON:0002097,2.78e-07,41;UBERON:0004237,6.14e-07,10;UBERON:0004695,6.14e-07,10;UBERON:0002111,6.14e-07,10;UBERON:0004178,6.14e-07,10 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.986680828671798,2.00146596706261,2.23480547213644,5.23403114460221,0,0.631719873426831,0,0,0,0,0,0.247532705920093,0.331397375727916,1.34465029290355,1.20538905604795,0,0.975865597581014,2.33930010345897,1.42800483870977,0.626909442956176,0.572471974262113,0.136874425072884,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,1.0843174571537,1.50401373190767,1.88300474649071,0.795285947051099,0.973269740605272,0.378139268656271,0.886917589850256,0.263504357079378,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0.258416759169329,0,1.00416183829401,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,3.03913227994991,3.31022952033047,8.89193524321323,1.06400514659507,0,1.06748995729705,0.98667019366864,0,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0.597794722207204,0.587172493218824,1.94247533241758,0.98315564691574,0,0.122834317311768,0,0,0.494533858557114,2.73048408581408,0.718618141816238,0,0.125118519871964,0,1.31693286264251,0.919463387397059,0.45071417671979,1.13432183160021,6.63741652048789,0.85422955527427,1.05965950579781,8.10245959427886,1.54578793857658,2.31876486041066,1.8611685633159,6.91982962189192,1.85130309806277,4.03894038790583,1.47279837827679,0.161646056818812,6.39017266529906,2.61955455391865,1.18692414617341,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0.928735856063958,0,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,0,0.231860809950154,3.87448690978212,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.336393253036082,0.43596006883328,0.51336800074665,3.49033632546,0,0,0.797814349754612,1.04007436911366,0,0,0,0.714889968290738,0,0,0.325736184293735,0.355391948742546,0,0.602878754119172,1.74306691720059,1.09970290300263,0,0,0,3.35474797688216,0,0,1.01346914667305,0.410952645100767,0.537182889719687,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0.36807447515742,0,0.271265023699736,0,0.892144943985809,0.315404830067869,0.937131319941706,0.300946099727719,0,1.03473071292505,1.32845119707087,0.921845842708516,0.434418072340414,0,0,0,0,0,0,1.66435439510497,0,1.98486246255021,2.91577749247319,2.24528075546459,1.53766979106841,1.53512174720011,3.86049410744658,1.48418066444991,1.07946785661859,1.77561725313127,1.39616165223476,0,1.62694529843943,0,0.200506470303285,0.0920809889358963,0.803701137152247,0.910455840033585,0.524497659837696,0,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0,0.863663664408557,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0.656029291399411,1.30151357865721,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0.137836572484531,0.107420244868274,0.290033387828457,0.0852266274161009,0.801288320820636,0,0,0,0,1.85938219718914,14.4813679542094,0.6970372701606,1.84820148105653,1.06461206063404,0,0.55597265731176,1.43124886741991,0.744316738719335,0,0.38126038784765,0.255897791311334,0,2.22742273548156,0,0.899362287916574,0.274537029736055,0.117812402345686,0.808729926293264,1.58510321173008,0.421258456238981,0.48763373908959,0.974853958525138,0,0.409499734223957,0.707027159768564,0,1.10273068709225,0,0.876901770507525,0,0,0.811641507850816,0.30982349809975,0.845086807596724,0.430234056612155,1.08073945114433,1.78335525740625,0,0.844430541190656,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0.445234820091624,0,0,0.796991953004279,0,0,0,0,0.622079175323615,0,0,0,0.0986434056369336,0,5.55684950723184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0.183195186803725,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,4.64362287673365,0,0.219267951258557,0.0821154570532092,0,0,0.677942222341597,0.411125773940253,0.19871461170299,0,0,0,0,0,0,0,0,0,0,0,0.67952103036807,0.836822770498666,0,0,0,0,0,2.57859264851974,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,4.32359860250884,0,0.0787831823072236,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,2.95680942254338,0,0.191915197319445,0,0,0,0.542999601753713,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0.74627401443437,1.63599316893057,2.77402930751307,0.189403005275089,0.754703705257725,0,0.686520205190771,0.756154618816195,0.466311601748341,0.443565449968902,0.318593534327405,1.34940933649081,0.931577741257556,1.65882483136342,1.86089200190596,3.1304703708704,3.30566739793881,1.90402606084398,0,0.727394636810238,1.18151612746737,1.39210127963548,3.98095888698616,0,1.37358282073117,1.6837474438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| ||
|short_description=p10@LOX | |short_description=p10@LOX | ||
}} | }} |
Latest revision as of 23:26, 19 September 2015
Short description: | p10@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LOX_5end |
Coexpression cluster: | C421_Smooth_Fibroblast_epithelioid_hepatic_Sertoli_Ewing_tenocyte |
Association with transcript: | -97bp_to_NM_002317, uc003ksu.2_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | D0PNI2P28300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.56e-29 | 76 |
preadipocyte | 3.53e-19 | 12 |
skin fibroblast | 9.43e-16 | 23 |
multi fate stem cell | 1.23e-10 | 427 |
somatic stem cell | 3.10e-10 | 433 |
stem cell | 1.02e-09 | 441 |
fibroblast of tunica adventitia of artery | 1.95e-09 | 4 |
fibroblast of the aortic adventitia | 1.95e-09 | 4 |
motile cell | 6.55e-08 | 386 |
mesenchymal cell | 6.59e-08 | 354 |
preadipocyte of the breast | 1.68e-07 | 3 |
connective tissue cell | 1.77e-07 | 361 |
omentum preadipocyte | 3.99e-07 | 3 |
aortic smooth muscle cell | 6.14e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
artery wall | 1.95e-09 | 4 |
tunica adventitia of artery | 1.95e-09 | 4 |
adventitia | 1.95e-09 | 4 |
tunica adventitia of blood vessel | 1.95e-09 | 4 |
aorta tunica adventitia | 1.95e-09 | 4 |
aorta wall | 1.95e-09 | 4 |
systemic artery | 3.39e-09 | 33 |
systemic arterial system | 3.39e-09 | 33 |
omentum | 4.71e-09 | 6 |
peritoneum | 4.71e-09 | 6 |
abdominal cavity | 4.71e-09 | 6 |
visceral peritoneum | 4.71e-09 | 6 |
artery | 8.92e-09 | 42 |
arterial blood vessel | 8.92e-09 | 42 |
arterial system | 8.92e-09 | 42 |
aorta | 2.95e-08 | 21 |
aortic system | 2.95e-08 | 21 |
integument | 3.46e-08 | 46 |
integumental system | 3.46e-08 | 46 |
connective tissue | 5.97e-08 | 371 |
skin of body | 2.78e-07 | 41 |
blood vessel smooth muscle | 6.14e-07 | 10 |
arterial system smooth muscle | 6.14e-07 | 10 |
artery smooth muscle tissue | 6.14e-07 | 10 |
aorta smooth muscle tissue | 6.14e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 6.69e-11 | 14 |
musculoskeletal system disease | 2.42e-07 | 5 |
myotonic disease | 2.42e-07 | 5 |
muscle tissue disease | 2.42e-07 | 5 |
myopathy | 2.42e-07 | 5 |
muscular disease | 2.42e-07 | 5 |
myotonic dystrophy | 2.42e-07 | 5 |