FFCP PHASE1:Hg19::chr12:70132632..70132687,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:70132632..70132687,+ to FFCP PHASE1:Hg19::chr12:70132632..70132687,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=117177 | |EntrezGene=117177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16508 | |HGNC=16508 | ||
|TSSclassifier=strong | |||
|UniProt=Q96QF0 | |UniProt=Q96QF0 | ||
|association_with_transcript=0bp_to_ENST00000325555,ENST00000378815,ENST00000417413,ENST00000483530_5end | |||
|cluster_id=chr12:70132632..70132687,+ | |||
|description=CAGE_peak_1_at_RAB3IP_5end | |||
|id=chr12:70132632..70132687,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.56e-07;82 | |||
|ontology_enrichment_disease=DOID:305!4.40e-17!106;DOID:0050687!1.45e-16!143;DOID:162!8.84e-14!235;DOID:14566!7.41e-13!239;DOID:299!2.30e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;2.51e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.39e-17,106;DOID:0050687,1.40e-16,143;DOID:162,8.61e-14,235;DOID:14566,7.23e-13,239;DOID:299,2.30e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.23e-22!115;UBERON:0001049!1.94e-22!57;UBERON:0005068!1.94e-22!57;UBERON:0006241!1.94e-22!57;UBERON:0007135!1.94e-22!57;UBERON:0005743!6.81e-20!86;UBERON:0000073!5.15e-19!94;UBERON:0001016!5.15e-19!94;UBERON:0001017!8.01e-19!82;UBERON:0002780!9.17e-19!41;UBERON:0001890!9.17e-19!41;UBERON:0006240!9.17e-19!41;UBERON:0003080!1.16e-18!42;UBERON:0002616!7.35e-18!59;UBERON:0002346!5.85e-17!90;UBERON:0000955!1.40e-16!69;UBERON:0006238!1.40e-16!69;UBERON:0003075!2.21e-16!86;UBERON:0007284!2.21e-16!86;UBERON:0002020!2.71e-15!34;UBERON:0003528!2.71e-15!34;UBERON:0001893!3.63e-15!34;UBERON:0002791!1.07e-14!33;UBERON:0001869!3.68e-14!32;UBERON:0003056!9.52e-14!61;UBERON:0002619!8.84e-12!22;UBERON:0000956!8.24e-11!25;UBERON:0000203!8.24e-11!25;UBERON:0001950!1.17e-10!20;UBERON:0000153!2.24e-08!129;UBERON:0007811!2.24e-08!129;UBERON:0000924!3.58e-08!173;UBERON:0006601!3.58e-08!173;UBERON:0004121!1.06e-07!169;UBERON:0000033!1.35e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.09e-14;41!UBERON:0001890;8.09e-14;41!UBERON:0003528;4.11e-13;34!UBERON:0002020;4.11e-13;34!UBERON:0001893;5.07e-13;34!UBERON:0002791;5.80e-13;32!UBERON:0001869;5.99e-13;32!UBERON:0000073;1.21e-12;53!UBERON:0002616;1.21e-12;53!UBERON:0002619;8.47e-12;22!UBERON:0000956;7.54e-11;25!UBERON:0000203;7.54e-11;25!UBERON:0001950;1.13e-10;20!UBERON:0001017;1.35e-08;75!UBERON:0001016;2.95e-08;83!UBERON:0000955;3.94e-08;68!UBERON:0007023;1.37e-07;114!UBERON:0000922;9.01e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.65e-22,56;UBERON:0005068,1.65e-22,56;UBERON:0006241,1.65e-22,56;UBERON:0007135,1.65e-22,56;UBERON:0007023,2.72e-22,114;UBERON:0000073,4.39e-21,53;UBERON:0002616,4.39e-21,53;UBERON:0001017,8.66e-19,81;UBERON:0002780,9.15e-19,41;UBERON:0001890,9.15e-19,41;UBERON:0003080,9.15e-19,41;UBERON:0006240,9.15e-19,41;UBERON:0001016,6.60e-18,89;UBERON:0000955,1.49e-16,68;UBERON:0006238,1.49e-16,68;UBERON:0002346,1.56e-16,86;UBERON:0003075,5.80e-16,82;UBERON:0007284,5.80e-16,82;UBERON:0003528,2.70e-15,34;UBERON:0002020,2.70e-15,34;UBERON:0001893,3.62e-15,34;UBERON:0003056,2.74e-14,61;UBERON:0002791,3.43e-14,32;UBERON:0001869,3.68e-14,32;UBERON:0010371,9.66e-13,104;UBERON:0002619,8.83e-12,22;UBERON:0011216,1.14e-11,223;UBERON:0000956,8.23e-11,25;UBERON:0000203,8.23e-11,25;UBERON:0001950,1.17e-10,20;UBERON:0004121,2.92e-07,171;UBERON:0000924,2.92e-07,171;UBERON:0006601,2.92e-07,171 | |||
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| ||
|short_description=p1@RAB3IP | |||
}} | }} |
Latest revision as of 06:48, 20 September 2015
Short description: | p1@RAB3IP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB3IP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000325555, ENST00000378815, ENST00000417413, ENST00000483530_5end |
EntrezGene: | RAB3IP |
HGNC: | 16508 |
UniProt: | Q96QF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.65e-22 | 56 |
neural rod | 1.65e-22 | 56 |
future spinal cord | 1.65e-22 | 56 |
neural keel | 1.65e-22 | 56 |
adult organism | 2.72e-22 | 114 |
regional part of nervous system | 4.39e-21 | 53 |
regional part of brain | 4.39e-21 | 53 |
central nervous system | 8.66e-19 | 81 |
regional part of forebrain | 9.15e-19 | 41 |
forebrain | 9.15e-19 | 41 |
anterior neural tube | 9.15e-19 | 41 |
future forebrain | 9.15e-19 | 41 |
nervous system | 6.60e-18 | 89 |
brain | 1.49e-16 | 68 |
future brain | 1.49e-16 | 68 |
neurectoderm | 1.56e-16 | 86 |
neural plate | 5.80e-16 | 82 |
presumptive neural plate | 5.80e-16 | 82 |
brain grey matter | 2.70e-15 | 34 |
gray matter | 2.70e-15 | 34 |
telencephalon | 3.62e-15 | 34 |
pre-chordal neural plate | 2.74e-14 | 61 |
regional part of telencephalon | 3.43e-14 | 32 |
cerebral hemisphere | 3.68e-14 | 32 |
ecto-epithelium | 9.66e-13 | 104 |
regional part of cerebral cortex | 8.83e-12 | 22 |
organ system subdivision | 1.14e-11 | 223 |
cerebral cortex | 8.23e-11 | 25 |
pallium | 8.23e-11 | 25 |
neocortex | 1.17e-10 | 20 |
ectoderm-derived structure | 2.92e-07 | 171 |
ectoderm | 2.92e-07 | 171 |
presumptive ectoderm | 2.92e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.39e-17 | 106 |
cell type cancer | 1.40e-16 | 143 |
cancer | 8.61e-14 | 235 |
disease of cellular proliferation | 7.23e-13 | 239 |
adenocarcinoma | 2.30e-07 | 25 |