FFCP PHASE2:Hg19::chr9:116225978..116225998,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:5998 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9999 |TSSclass...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9999 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=B3KWG8,P49796,Q9NX91 | ||
|association_with_transcript=-10bp_to_ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | |association_with_transcript=-10bp_to_ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | ||
|cluster_id=chr9:116225978..116225998,+ | |cluster_id=chr9:116225978..116225998,+ | ||
Latest revision as of 07:03, 20 September 2015
| Short description: | p12@RGS3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_12_at_RGS3_5end |
| Coexpression cluster: | C4792_small_left_aorta_carcinoid_MCF7_adenocarcinoma_Renal |
| Association with transcript: | -10bp_to_ENST00000478599, NM_017790, uc004bhr.2, uc004bhs.2_5end |
| EntrezGene: | RGS3 |
| HGNC: | 9999 |
| UniProt: | B3KWG8P49796Q9NX91 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p12@RGS3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 7.15e-22 | 253 |
| kidney tubule cell | 2.19e-16 | 10 |
| nephron tubule epithelial cell | 2.19e-16 | 10 |
| kidney cell | 1.13e-14 | 17 |
| kidney epithelial cell | 1.13e-14 | 17 |
| epithelial cell of nephron | 3.34e-12 | 15 |
| kidney cortical cell | 4.27e-08 | 12 |
| renal cortical epithelial cell | 4.27e-08 | 12 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| nephron tubule epithelium | 2.19e-16 | 10 |
| nephron epithelium | 3.34e-12 | 15 |
| renal tubule | 3.34e-12 | 15 |
| nephron tubule | 3.34e-12 | 15 |
| nephron | 3.34e-12 | 15 |
| uriniferous tubule | 3.34e-12 | 15 |
| nephrogenic mesenchyme | 3.34e-12 | 15 |
| kidney | 1.86e-11 | 26 |
| kidney mesenchyme | 1.86e-11 | 26 |
| upper urinary tract | 1.86e-11 | 26 |
Showing 1 to 10 of 25 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 1.58e-31 | 106 |
| cell type cancer | 1.06e-30 | 143 |
| cancer | 1.58e-16 | 235 |
| disease of cellular proliferation | 8.69e-16 | 239 |
| bronchus cancer | 3.48e-12 | 7 |
| bronchogenic carcinoma | 3.48e-12 | 7 |
| adenocarcinoma | 9.36e-12 | 25 |
| lung small cell carcinoma | 1.64e-07 | 4 |
| respiratory system cancer | 3.95e-07 | 16 |
| disease of anatomical entity | 5.72e-07 | 39 |
Showing 1 to 10 of 11 entries
