FFCP PHASE1:Hg19::chr7:100204173..100204212,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:100204173..100204212,+
|short_description=p10@PCOLCE
|description=CAGE_peak_10_at_PCOLCE_5end
|association_with_transcript=176bp_to_uc003uvp.1_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5118 | |EntrezGene=5118 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8738 | |HGNC=8738 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=176bp_to_uc003uvp.1_5end | |||
|cluster_id=chr7:100204173..100204212,+ | |||
|coexpression_cluster_id=C1779 | |||
|description=CAGE_peak_10_at_PCOLCE_5end | |||
|id=chr7:100204173..100204212,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-39!180;CL:0000057!1.16e-24!75;CL:0000680!1.50e-13!57;CL:0000056!1.50e-13!57;CL:0000355!1.50e-13!57;CL:0000187!1.57e-13!54;CL:0000048!1.61e-13!430;CL:0000183!3.34e-13!59;CL:0000393!8.47e-13!60;CL:0000211!8.47e-13!60;CL:0000034!9.99e-13!444;CL:0000723!1.63e-12!436;CL:0002620!2.18e-11!23;CL:0000192!6.23e-10!42;CL:0000514!6.23e-10!42;CL:0002320!2.41e-07!365;CL:0000499!8.70e-07!27;CL:0002334!9.02e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.58e-11;23!CL:0002570;6.76e-08;8!CL:0000057;1.15e-07;73!CL:0000723;1.18e-07;61!CL:0002320;1.21e-07;188!CL:0000499;1.62e-07;28!CL:0000134;3.03e-07;55!CL:0002540;8.33e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.13e-20,76;CL:0000048,3.64e-15,427;CL:0000723,1.75e-14,433;CL:0000034,1.30e-13,441;CL:0002620,8.76e-12,23;CL:0002320,8.10e-11,361;CL:0000680,2.56e-09,58;CL:0000056,2.56e-09,58;CL:0000355,2.56e-09,58;CL:0000187,2.68e-09,55;CL:0000393,2.03e-08,61;CL:0000211,2.03e-08,61;CL:0000134,4.90e-08,354;CL:0002570,5.99e-08,8;CL:0000499,1.58e-07,28;CL:0002540,8.14e-07,6;CL:0000192,8.90e-07,43;CL:0000514,8.90e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.20e-18!83;UBERON:0002329!1.20e-18!83;UBERON:0003077!1.20e-18!83;UBERON:0003059!1.20e-18!83;UBERON:0007282!1.20e-18!83;UBERON:0009618!1.20e-18!83;UBERON:0007285!1.20e-18!83;UBERON:0004290!3.29e-17!70;UBERON:0000486!2.93e-14!82;UBERON:0001134!1.31e-13!61;UBERON:0002036!1.31e-13!61;UBERON:0003082!1.31e-13!61;UBERON:0002385!1.30e-12!63;UBERON:0001015!1.30e-12!63;UBERON:0000383!1.30e-12!63;UBERON:0005256!2.84e-12!143;UBERON:0002199!4.21e-11!45;UBERON:0002416!4.21e-11!45;UBERON:0003102!2.03e-10!95;UBERON:0001013!1.82e-09!14;UBERON:0002097!2.53e-08!40;UBERON:0002100!3.18e-08!216;UBERON:0002384!1.37e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;3.86e-10;46!UBERON:0002416;3.86e-10;46!UBERON:0001013;1.04e-09;14!UBERON:0002204;1.72e-09;70!UBERON:0002097;1.62e-08;41!UBERON:0004905;2.07e-08;8!UBERON:0000982;2.07e-08;8!UBERON:0004770;2.07e-08;8!UBERON:0002384;2.86e-08;198!UBERON:0003102;8.27e-08;50!UBERON:0002385;1.94e-07;31!UBERON:0001015;1.94e-07;31!UBERON:0000383;1.94e-07;31!UBERON:0002072;3.32e-07;5!UBERON:0011135;3.69e-07;5!UBERON:0002216;3.69e-07;5!UBERON:0011134;3.69e-07;5!UBERON:0002209;3.69e-07;5!UBERON:0002213;3.69e-07;5!UBERON:0007844;3.69e-07;5!UBERON:0011138;3.69e-07;5!UBERON:0001130;3.69e-07;5!UBERON:0001066;3.69e-07;5!UBERON:0001468;3.69e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.24e-15,46;UBERON:0002416,2.24e-15,46;UBERON:0003102,7.27e-14,99;UBERON:0007524,1.76e-12,73;UBERON:0002329,5.23e-12,71;UBERON:0003059,5.23e-12,71;UBERON:0007282,5.23e-12,71;UBERON:0004290,5.23e-12,71;UBERON:0009618,5.23e-12,71;UBERON:0003077,1.07e-11,72;UBERON:0007285,1.07e-11,72;UBERON:0002097,4.31e-11,41;UBERON:0000486,1.20e-10,83;UBERON:0002384,2.83e-10,371;UBERON:0001134,4.94e-10,62;UBERON:0002036,4.94e-10,62;UBERON:0003082,4.94e-10,62;UBERON:0007503,5.03e-10,78;UBERON:0001013,8.05e-10,14;UBERON:0002385,1.87e-09,64;UBERON:0001015,1.87e-09,64;UBERON:0000383,1.87e-09,64;UBERON:0005256,1.16e-08,122;UBERON:0004905,2.42e-08,8;UBERON:0000982,2.42e-08,8;UBERON:0004770,2.42e-08,8;UBERON:0003104,6.89e-08,160;UBERON:0009142,6.89e-08,160;UBERON:0002072,2.54e-07,5;UBERON:0011135,4.33e-07,5;UBERON:0002216,4.33e-07,5;UBERON:0011134,4.33e-07,5;UBERON:0002209,4.33e-07,5;UBERON:0002213,4.33e-07,5;UBERON:0005856,4.33e-07,5;UBERON:0005866,4.33e-07,5;UBERON:0005863,4.33e-07,5;UBERON:0007844,4.33e-07,5;UBERON:0011138,4.33e-07,5;UBERON:0001130,4.33e-07,5;UBERON:0001066,4.33e-07,5;UBERON:0001468,4.33e-07,5 | |||
|phase1_expression=0.726713517082227,2.14100523890983,0.845726424575827,0,1.78784437770915,0.872338524100369,7.59899634504932,3.79031924056099,3.65659879479774,0.737201809504527,0,0,0,3.58922423584135,4.30816588446291,2.01697543935533,1.20538905604795,0.730310090387373,1.46379839637152,0.246242116153576,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.255725123687061,2.1686349143074,3.50936537445123,7.53201898596283,2.3858578411533,1.94653948121054,0,0,0.087834785693126,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,3.67228483827281,0.264818361626438,35.5677409728529,6.73869926176878,0.560677600142307,1.06748995729705,0.98667019366864,0.311211035399766,0.808264032418128,0.817309515567294,1.96764655938411,2.88087962239999,0.468642863667593,7.49184184392769,0.570471821544449,5.52960118041664,0.23486899728753,0.647491777472526,0.98315564691574,1.83738754129404,1.22834317311768,1.96318984233954,5.94001428641027,10.1379441004208,0.910161361938026,1.43723628363248,0.673344455816265,0.625592599359821,0,3.95079858792754,3.98434134538726,6.00952235626387,0,1.61450672119976,3.84403299873421,3.60284231971255,2.70081986475962,3.7098910525838,2.83404594050192,2.97786970130544,1.85653965465393,2.33848812386877,1.26216887122057,2.48534726334208,8.24394889775941,3.55009592516614,0.705264687593482,1.18692414617341,0,0,0,0.243947412259191,0.132529768321485,0.348581828608555,0.414644220061482,0.252320850875628,0,1.56449532329816,7.07565032012174,1.38134921352481,3.71494342425583,3.60939740834793,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,2.53510069643662,0,1.18157981336281,0.441463099414651,0.122988438543114,0.514703430895577,0,0,0,0,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0.308482478109971,0,0,0.560655421726804,0.87192013766656,0.22001485746285,0.387815147273333,25.0359512096318,4.22651376278,2.6593811658487,5.2003718455683,1.54324424557285,1.41849132023278,1.5985330740966,0.142977993658148,6.51145926469732,0.823240336780769,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.479249710983165,2.29723871668228,0,0.144781306667579,3.08214483825575,0,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,3.55805325985506,6.00204625271613,3.25518028439683,1.24782516918484,4.10386674233472,1.89242898040722,1.99140405487612,1.50473049863859,34.1111256083977,17.5904221197258,1.32845119707087,0.553107505625109,6.16873662723388,7.63624514104688,10.6374461381365,0,0.215714200818617,0,0,0,0.604780586659361,0.992431231275107,0.460385919864187,3.08726103876381,0.512556597022804,1.02341449813341,0.482561763430822,1.48418066444991,2.7757744884478,9.76589489222199,1.56041596426237,6.75030757938707,3.83494248917865,0.483437798366489,0,0,2.29628896329214,3.09554985611419,9.96545553691623,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,1.23649213977267,0.915694648183434,1.07262349896764,0,0,4.82051789532479,2.70678011217942,1.07834031980251,1.99554777143968,0.413509717453592,3.11518710117994,3.62541734785571,0.596586391912706,1.78064071293475,0,0,0,0,0.464845549297286,10.0739950985805,2.0911118104818,1.23213432070436,1.06461206063404,0,0.55597265731176,0.286249773483982,0.744316738719335,0.949138274156178,0,1.27948895655667,1.28381696410176,1.27281299170375,4.70969184119538,1.2591072030832,1.09814811894422,0.824686816419805,0.808729926293264,0,0,0.975267478179181,0.974853958525138,1.05650146756755,2.8664981395677,6.22183900596336,2.26016233240486,1.10273068709225,0,0,4.05142873986681,4.59126326432643,0.202910376962704,0.92947049429925,1.69017361519345,0.143411352204052,0.392996164052485,0,2.12856638442359,15.6219650120271,9.22025700287725,0.75894634753143,1.74967360122491,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0.307160702099232,0,0,0.222617410045812,0.16480387422676,0,0.597743964753209,0.828851746593443,0,0,0,0.622079175323615,0,0,0,0.690503839458535,0,0,0,0,0,0,0.0874599999961957,1.44999915086959,0,0,0.236387681767936,0,0.291604613383254,0,0,0,0,0,0,0.658156191461918,0.32681539055697,0,2.07765697960252,0.113942055847001,0,0,0,0.31900115973192,4.67147726349498,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0.296521128680622,0,0,0,3.21031058919516,0,0,0,0,0,1.20990716048664,0,1.0741718536843,0,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,5.41652671550293,0.343972064943233,0,0,0,0.387956065953678,0,1.12990370390266,0.137041924646751,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0.104602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| ||
|short_description=p10@PCOLCE | |||
}} | }} |
Latest revision as of 07:50, 20 September 2015
Short description: | p10@PCOLCE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PCOLCE_5end |
Coexpression cluster: | C1779_Osteoblast_Fibroblast_Mesenchymal_Smooth_normal_Pericytes_Nucleus |
Association with transcript: | 176bp_to_uc003uvp.1_5end |
EntrezGene: | PCOLCE |
HGNC: | 8738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.13e-20 | 76 |
multi fate stem cell | 3.64e-15 | 427 |
somatic stem cell | 1.75e-14 | 433 |
stem cell | 1.30e-13 | 441 |
skin fibroblast | 8.76e-12 | 23 |
connective tissue cell | 8.10e-11 | 361 |
muscle precursor cell | 2.56e-09 | 58 |
myoblast | 2.56e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.56e-09 | 58 |
muscle cell | 2.68e-09 | 55 |
electrically responsive cell | 2.03e-08 | 61 |
electrically active cell | 2.03e-08 | 61 |
mesenchymal cell | 4.90e-08 | 354 |
mesenchymal stem cell of adipose | 5.99e-08 | 8 |
stromal cell | 1.58e-07 | 28 |
mesenchymal stem cell of the bone marrow | 8.14e-07 | 6 |
smooth muscle cell | 8.90e-07 | 43 |
smooth muscle myoblast | 8.90e-07 | 43 |