FFCP PHASE1:Hg19::chr11:82708406..82708420,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27314 | |EntrezGene=27314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9770 | |HGNC=9770 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLM3,E9PNB9 | |UniProt=E9PLM3,E9PNB9 | ||
|association_with_transcript=34bp_to_ENST00000525117,ENST00000532548,uc009yvg.1_5end | |association_with_transcript=34bp_to_ENST00000525117,ENST00000532548,uc009yvg.1_5end | ||
|cluster_id=chr11:82708406..82708420,- | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_13_at_RAB30_5end | |description=CAGE_peak_13_at_RAB30_5end | ||
|id=chr11:82708406..82708420,- | |id=chr11:82708406..82708420,- | ||
|ontology_enrichment_celltype=CL:0000945!3.07e-13!24;CL:0000826!3.07e-13!24;CL:0000542!6.46e-11!53;CL:0000051!6.46e-11!53;CL:0000838!1.77e-09!52;CL:0000080!2.11e-07!6 | |ontology_enrichment_celltype=CL:0000945!3.07e-13!24;CL:0000826!3.07e-13!24;CL:0000542!6.46e-11!53;CL:0000051!6.46e-11!53;CL:0000838!1.77e-09!52;CL:0000080!2.11e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.94e-28;24!CL:0000542;5.92e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.00e-28,24;CL:0000826,3.00e-28,24;CL:0000838,4.97e-21,52;CL:0000542,1.28e-20,53;CL:0000051,1.28e-20,53;CL:0000988,3.16e-10,177;CL:0002087,6.01e-09,115;CL:0002031,1.54e-08,120;CL:0000738,1.98e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;5.92e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;9.98e-16;1!DOID:0070004;9.98e-16;1!DOID:630;2.21e-15;1!DOID:0050177;2.21e-15;1!DOID:0060060;2.21e-15;1!DOID:0060061;2.21e-15;1!DOID:0050427;2.21e-15;1!DOID:8691;2.21e-15;1!DOID:0060058;2.97e-13;10 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,9.99e-16,1;DOID:0070004,9.99e-16,1;DOID:630,1.34e-15,1;DOID:0050177,1.34e-15,1;DOID:0050427,1.34e-15,1;DOID:0060060,2.38e-15,1;DOID:0060061,2.38e-15,1;DOID:8691,2.38e-15,1;DOID:0060058,3.30e-13,10;DOID:2531,7.09e-07,51;DOID:0060083,7.09e-07,51 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.12e-13;10!UBERON:0002390;8.83e-11;32!UBERON:0000178;2.60e-09;15!UBERON:0000179;2.60e-09;15!UBERON:0000463;2.60e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.05e-13,10;UBERON:0000358,1.05e-13,10;UBERON:0000307,1.05e-13,10;UBERON:0000091,1.05e-13,10;UBERON:0000087,1.05e-13,10;UBERON:0007010,1.05e-13,10;UBERON:0007806,1.05e-13,10;UBERON:0008780,1.05e-13,10;UBERON:0005728,1.05e-13,10;UBERON:0000178,2.49e-09,15;UBERON:0000179,2.49e-09,15;UBERON:0000463,2.49e-09,15 | |||
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| ||
|short_description=p13@RAB30 | |short_description=p13@RAB30 | ||
}} | }} |
Latest revision as of 18:18, 24 September 2015
Short description: | p13@RAB30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RAB30_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 34bp_to_ENST00000525117, ENST00000532548, uc009yvg.1_5end |
EntrezGene: | RAB30 |
HGNC: | 9770 |
UniProt: | E9PLM3E9PNB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.00e-28 | 24 |
pro-B cell | 3.00e-28 | 24 |
lymphoid lineage restricted progenitor cell | 4.97e-21 | 52 |
lymphocyte | 1.28e-20 | 53 |
common lymphoid progenitor | 1.28e-20 | 53 |
hematopoietic cell | 3.16e-10 | 177 |
nongranular leukocyte | 6.01e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.54e-08 | 120 |
leukocyte | 1.98e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.05e-13 | 10 |
blastocyst | 1.05e-13 | 10 |
blastula | 1.05e-13 | 10 |
bilaminar disc | 1.05e-13 | 10 |
inner cell mass | 1.05e-13 | 10 |
cleaving embryo | 1.05e-13 | 10 |
connecting stalk | 1.05e-13 | 10 |
inner cell mass derived epiblast | 1.05e-13 | 10 |
extraembryonic mesoderm | 1.05e-13 | 10 |
blood | 2.49e-09 | 15 |
haemolymphatic fluid | 2.49e-09 | 15 |
organism substance | 2.49e-09 | 15 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 9.99e-16 | 1 |
myeloma | 9.99e-16 | 1 |
genetic disease | 1.34e-15 | 1 |
monogenic disease | 1.34e-15 | 1 |
xeroderma pigmentosum | 1.34e-15 | 1 |
non-Hodgkin lymphoma | 2.38e-15 | 1 |
cutaneous T cell lymphoma | 2.38e-15 | 1 |
mycosis fungoides | 2.38e-15 | 1 |
lymphoma | 3.30e-13 | 10 |
hematologic cancer | 7.09e-07 | 51 |
immune system cancer | 7.09e-07 | 51 |