FFCP PHASE1:Hg19::chr9:123342415..123342455,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55755 | |EntrezGene=55755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |HGNC=18672 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCD3,Q96SN8,B3KVI2,Q05CZ3,Q7Z3M0 | |UniProt=E9PCD3,Q96SN8,B3KVI2,Q05CZ3,Q7Z3M0 | ||
|association_with_transcript=0bp_to_ENST00000345313,ENST00000349780,ENST00000359309,ENST00000360190,ENST00000360822,ENST00000491334,NM_001011649,NM_018249,uc004bkf.2,uc004bkg.2,uc004bkh.1,uc011lxw.1,uc011lxx.1,uc011lxy.1,uc011lxz.1,uc011lya.1_5end | |association_with_transcript=0bp_to_ENST00000345313,ENST00000349780,ENST00000359309,ENST00000360190,ENST00000360822,ENST00000491334,NM_001011649,NM_018249,uc004bkf.2,uc004bkg.2,uc004bkh.1,uc011lxw.1,uc011lxx.1,uc011lxy.1,uc011lxz.1,uc011lya.1_5end | ||
|cluster_id=chr9:123342415..123342455,- | |||
|description=CAGE_peak_1_at_CDK5RAP2_5end | |description=CAGE_peak_1_at_CDK5RAP2_5end | ||
|id=chr9:123342415..123342455,- | |id=chr9:123342415..123342455,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.23e-08;82!UBERON:0002532;3.53e-07;206!UBERON:0010316;3.53e-07;206 | |||
|ontology_enrichment_disease=DOID:162!1.50e-17!235;DOID:14566!5.35e-16!239;DOID:0050687!1.11e-13!143;DOID:305!5.75e-11!106;DOID:0050686!2.09e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.50e-17,235;DOID:14566,5.35e-16,239;DOID:0050687,1.11e-13,143;DOID:305,5.75e-11,106;DOID:0050686,2.09e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.94e-21!115;UBERON:0000073!3.13e-13!94;UBERON:0001016!3.13e-13!94;UBERON:0001049!9.04e-13!57;UBERON:0005068!9.04e-13!57;UBERON:0006241!9.04e-13!57;UBERON:0007135!9.04e-13!57;UBERON:0001017!2.11e-12!82;UBERON:0000955!2.38e-12!69;UBERON:0006238!2.38e-12!69;UBERON:0005743!5.40e-12!86;UBERON:0000924!5.64e-11!173;UBERON:0006601!5.64e-11!173;UBERON:0004121!1.38e-10!169;UBERON:0003080!2.04e-10!42;UBERON:0002616!2.14e-10!59;UBERON:0002780!2.25e-10!41;UBERON:0001890!2.25e-10!41;UBERON:0006240!2.25e-10!41;UBERON:0002346!4.23e-10!90;UBERON:0000153!6.41e-10!129;UBERON:0007811!6.41e-10!129;UBERON:0003075!9.67e-10!86;UBERON:0007284!9.67e-10!86;UBERON:0000033!7.53e-09!123;UBERON:0002020!2.36e-08!34;UBERON:0003528!2.36e-08!34;UBERON:0001893!3.92e-08!34;UBERON:0002791!4.71e-08!33;UBERON:0001869!3.99e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.70e-08;53!UBERON:0002616;3.70e-08;53!UBERON:0002780;5.98e-08;41!UBERON:0001890;5.98e-08;41!UBERON:0003528;2.11e-07;34!UBERON:0002020;2.11e-07;34!UBERON:0001893;4.89e-07;34!UBERON:0002791;7.13e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.10e-21,114;UBERON:0001016,1.48e-13,89;UBERON:0011216,3.18e-13,223;UBERON:0001049,1.02e-12,56;UBERON:0005068,1.02e-12,56;UBERON:0006241,1.02e-12,56;UBERON:0007135,1.02e-12,56;UBERON:0001017,2.52e-12,81;UBERON:0000955,2.79e-12,68;UBERON:0006238,2.79e-12,68;UBERON:0000073,6.22e-12,53;UBERON:0002616,6.22e-12,53;UBERON:0002780,2.25e-10,41;UBERON:0001890,2.25e-10,41;UBERON:0003080,2.25e-10,41;UBERON:0006240,2.25e-10,41;UBERON:0004121,3.91e-10,171;UBERON:0000924,3.91e-10,171;UBERON:0006601,3.91e-10,171;UBERON:0002346,1.31e-09,86;UBERON:0003075,2.97e-09,82;UBERON:0007284,2.97e-09,82;UBERON:0003528,2.36e-08,34;UBERON:0002020,2.36e-08,34;UBERON:0001893,3.92e-08,34;UBERON:0002791,1.53e-07,32;UBERON:0010371,1.98e-07,104;UBERON:0001869,3.99e-07,32 | |||
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| ||
|short_description=p1@CDK5RAP2 | |short_description=p1@CDK5RAP2 | ||
}} | }} |
Latest revision as of 19:32, 24 September 2015
Short description: | p1@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDK5RAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000345313, ENST00000349780, ENST00000359309, ENST00000360190, ENST00000360822, ENST00000491334, NM_001011649, NM_018249, uc004bkf.2, uc004bkg.2, uc004bkh.1, uc011lxw.1, uc011lxx.1, uc011lxy.1, uc011lxz.1, uc011lya.1_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | E9PCD3Q96SN8B3KVI2Q05CZ3Q7Z3M0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.10e-21 | 114 |
nervous system | 1.48e-13 | 89 |
organ system subdivision | 3.18e-13 | 223 |
neural tube | 1.02e-12 | 56 |
neural rod | 1.02e-12 | 56 |
future spinal cord | 1.02e-12 | 56 |
neural keel | 1.02e-12 | 56 |
central nervous system | 2.52e-12 | 81 |
brain | 2.79e-12 | 68 |
future brain | 2.79e-12 | 68 |
regional part of nervous system | 6.22e-12 | 53 |
regional part of brain | 6.22e-12 | 53 |
regional part of forebrain | 2.25e-10 | 41 |
forebrain | 2.25e-10 | 41 |
anterior neural tube | 2.25e-10 | 41 |
future forebrain | 2.25e-10 | 41 |
ectoderm-derived structure | 3.91e-10 | 171 |
ectoderm | 3.91e-10 | 171 |
presumptive ectoderm | 3.91e-10 | 171 |
neurectoderm | 1.31e-09 | 86 |
neural plate | 2.97e-09 | 82 |
presumptive neural plate | 2.97e-09 | 82 |
brain grey matter | 2.36e-08 | 34 |
gray matter | 2.36e-08 | 34 |
telencephalon | 3.92e-08 | 34 |
regional part of telencephalon | 1.53e-07 | 32 |
ecto-epithelium | 1.98e-07 | 104 |
cerebral hemisphere | 3.99e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.50e-17 | 235 |
disease of cellular proliferation | 5.35e-16 | 239 |
cell type cancer | 1.11e-13 | 143 |
carcinoma | 5.75e-11 | 106 |
organ system cancer | 2.09e-07 | 137 |