FFCP PHASE1:Hg19::chr9:123342415..123342455,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=strong | |||
|UniProt=E9PCD3,Q96SN8,B3KVI2,Q05CZ3,Q7Z3M0 | |||
|association_with_transcript=0bp_to_ENST00000345313,ENST00000349780,ENST00000359309,ENST00000360190,ENST00000360822,ENST00000491334,NM_001011649,NM_018249,uc004bkf.2,uc004bkg.2,uc004bkh.1,uc011lxw.1,uc011lxx.1,uc011lxy.1,uc011lxz.1,uc011lya.1_5end | |||
|cluster_id=chr9:123342415..123342455,- | |||
|description=CAGE_peak_1_at_CDK5RAP2_5end | |||
|id=chr9:123342415..123342455,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.23e-08;82!UBERON:0002532;3.53e-07;206!UBERON:0010316;3.53e-07;206 | |||
|ontology_enrichment_disease=DOID:162!1.50e-17!235;DOID:14566!5.35e-16!239;DOID:0050687!1.11e-13!143;DOID:305!5.75e-11!106;DOID:0050686!2.09e-07!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.50e-17,235;DOID:14566,5.35e-16,239;DOID:0050687,1.11e-13,143;DOID:305,5.75e-11,106;DOID:0050686,2.09e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.94e-21!115;UBERON:0000073!3.13e-13!94;UBERON:0001016!3.13e-13!94;UBERON:0001049!9.04e-13!57;UBERON:0005068!9.04e-13!57;UBERON:0006241!9.04e-13!57;UBERON:0007135!9.04e-13!57;UBERON:0001017!2.11e-12!82;UBERON:0000955!2.38e-12!69;UBERON:0006238!2.38e-12!69;UBERON:0005743!5.40e-12!86;UBERON:0000924!5.64e-11!173;UBERON:0006601!5.64e-11!173;UBERON:0004121!1.38e-10!169;UBERON:0003080!2.04e-10!42;UBERON:0002616!2.14e-10!59;UBERON:0002780!2.25e-10!41;UBERON:0001890!2.25e-10!41;UBERON:0006240!2.25e-10!41;UBERON:0002346!4.23e-10!90;UBERON:0000153!6.41e-10!129;UBERON:0007811!6.41e-10!129;UBERON:0003075!9.67e-10!86;UBERON:0007284!9.67e-10!86;UBERON:0000033!7.53e-09!123;UBERON:0002020!2.36e-08!34;UBERON:0003528!2.36e-08!34;UBERON:0001893!3.92e-08!34;UBERON:0002791!4.71e-08!33;UBERON:0001869!3.99e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.70e-08;53!UBERON:0002616;3.70e-08;53!UBERON:0002780;5.98e-08;41!UBERON:0001890;5.98e-08;41!UBERON:0003528;2.11e-07;34!UBERON:0002020;2.11e-07;34!UBERON:0001893;4.89e-07;34!UBERON:0002791;7.13e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.10e-21,114;UBERON:0001016,1.48e-13,89;UBERON:0011216,3.18e-13,223;UBERON:0001049,1.02e-12,56;UBERON:0005068,1.02e-12,56;UBERON:0006241,1.02e-12,56;UBERON:0007135,1.02e-12,56;UBERON:0001017,2.52e-12,81;UBERON:0000955,2.79e-12,68;UBERON:0006238,2.79e-12,68;UBERON:0000073,6.22e-12,53;UBERON:0002616,6.22e-12,53;UBERON:0002780,2.25e-10,41;UBERON:0001890,2.25e-10,41;UBERON:0003080,2.25e-10,41;UBERON:0006240,2.25e-10,41;UBERON:0004121,3.91e-10,171;UBERON:0000924,3.91e-10,171;UBERON:0006601,3.91e-10,171;UBERON:0002346,1.31e-09,86;UBERON:0003075,2.97e-09,82;UBERON:0007284,2.97e-09,82;UBERON:0003528,2.36e-08,34;UBERON:0002020,2.36e-08,34;UBERON:0001893,3.92e-08,34;UBERON:0002791,1.53e-07,32;UBERON:0010371,1.98e-07,104;UBERON:0001869,3.99e-07,32 | |||
|phase1_expression=3.99692434395225,4.49611100171065,3.66481450649525,1.0007329835313,3.5756887554183,4.36169262050184,5.06599756336621,4.42203911398782,4.17897005119742,4.42321085702716,3.48900583986214,13.5433650720707,7.64924236862515,11.0152054134441,11.930305526205,4.70627602516243,3.61616716814386,8.03341099426111,3.41552959153355,7.87974771691443,5.71201935483908,3.44800193625897,26.3337108160572,27.3748850145768,28.7492644672098,24.4522898393444,26.9289933395822,26.4468225213962,11.0141997517693,18.8076405067634,9.75341576891279,8.27479102031034,7.53014796945625,5.17655614233503,29.2051346187737,19.903692548239,8.51441274071057,15.5118714388926,15.6424669026711,11.5015761479401,17.0175760422342,16.518576966968,25.4999811957845,4.07115068582781,4.53451132426571,4.12392904019288,2.78914844286822,2.87817521615278,2.78735733805593,3.45230870786581,3.84241059793651,1.41889337933151,4.13694816883942,4.51839278508678,1.35426486594342,2.82363509313907,1.91034305040492,3.37085226667627,6.73384563215986,1.92557416245656,3.83602275479425,3.29851300186716,2.79249120670285,4.26224750532694,2.32167390902867,2.26954089876456,1.86846674698672,4.27122730936464,2.08593167368081,2.38907729175628,5.44859552370032,3.68277635987565,3.48108626184973,5.49263744411049,7.22854619881148,3.77385561915077,3.81917345898083,5.25619124945272,5.6253955343978,8.55038231223746,6.16641699317179,7.67189445811463,15.839662001519,11.4689108365048,15.1216573156804,21.3365111283254,14.4142555332964,14.9435634388166,6.61044872784862,17.1729675816366,22.1993057952685,13.5064553555316,24.4654866000146,9.25199300053181,14.5732226375199,7.37475437370216,31.866982758441,22.0086027139532,21.9993603929475,10.365562714222,10.4295125322749,9.46895611469466,13.6378709885538,9.24706792146941,8.24896540929544,8.63982188876122,13.5401931882508,10.1192142583283,8.58391693895196,8.55077103939116,6.90875044464621,11.5921234294021,8.30404753707538,11.5042556078577,7.31748666634838,12.4640276967323,9.19729184644611,8.93431358254838,13.9160830610727,14.6540090589084,12.370585623272,9.50452044448374,18.5207396465661,18.6860452285451,16.240994451805,19.4157346676094,9.85353596305256,29.4345845108109,25.4068185994332,24.475324256193,4.87613732627923,9.38981203585091,8.82251676720359,11.5660528763061,8.02140657017423,10.4289493651793,10.3387173116643,10.2193322763554,22.2156820335559,14.6341402325292,11.9455308542651,20.4327357776432,4.37154345951051,4.82019775619758,6.16640047943898,8.18409765306556,6.38198210490553,11.4475499666564,10.8679033048224,13.7439275491939,10.136882775702,4.30117297553062,8.67851254018986,2.26123176769604,5.45349267072878,5.50236083880135,8.35979866147242,10.8535038851118,12.4518191940349,14.0582657361161,3.62546385398232,3.04108842287405,6.34561349625241,6.98559852657151,1.62028389576352,24.0216269084175,22.6774666352431,24.4366912648809,4.5994991239765,1.89853131913626,4.39684185432977,5.27121669744253,11.6334079244498,2.18047026071267,3.97577561356255,9.87717990983722,15.6242833359598,20.9390733146634,13.4773985235376,7.8494864019923,8.5399196583764,4.44001587150888,15.8717628053881,9.29503637280848,9.80771418680752,5.2975099675726,9.21881479167998,9.37285727335187,5.93104145977609,8.55707732316674,4.93180645820944,20.4336027640151,13.9210732156593,14.7473347037361,16.5364878716464,19.039319183324,16.6354507692982,15.4440371446667,12.857880322485,1.82032272387605,0,20.8736781303042,29.6530892096555,25.2128345090606,12.7303510055443,5.82326812018137,12.6199969481541,7.25965972224135,24.5763800893741,11.3185416073841,9.74886745333984,13.8041904198825,12.4693560378511,19.8383215835134,10.6086608109006,28.8607528132565,14.712987779341,17.670364197088,11.0459878370759,9.5371173523099,17.3954700333141,7.55640736707302,10.1736355386293,4.05847791642923,9.00062197949754,8.60413786167011,18.9059244500873,24.2529476028318,16.2671520017326,19.0736341228282,13.8776467981596,14.5990943630332,9.38697193978896,1.92972281457866,6.90674606762403,10.2160944167035,7.94067429836544,12.895441204343,14.3296986566386,13.978639733242,12.7941008369577,11.7654899809899,11.6262603364437,13.6179621241766,12.7543952331475,15.0051391209092,2.21446636387394,1.40241773803446,2.8810180793198,2.94017422771084,26.6185573125845,28.5019892836512,17.7236972004421,22.5146180701472,18.5712542200101,10.4656364282101,8.34102169105554,5.62008766288098,13.1692953859236,12.4994400964015,2.6064664424826,2.07986957055916,10.1031939417691,14.7231614318348,13.2671824486478,10.8274835820805,9.72269576410883,7.99067439385313,7.90204397959275,9.4433477830436,13.2957183287195,13.1042388477973,15.309009715739,5.62403003920662,11.7587489739202,7.93940544557364,18.1803801086782,14.8223308642121,10.3513323374607,13.3019074231905,14.1757978761294,22.8060927094849,25.9415916150531,19.946304481368,25.3991577168676,16.8074907245642,9.37739577680376,10.2643467613623,16.8637088033451,17.1195542971033,19.7220238515099,10.5403219284639,5.66748089483264,14.740995450011,3.74887975697556,10.72969337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| |||
|short_description=p1@CDK5RAP2 | |||
}} |
Latest revision as of 19:32, 24 September 2015
Short description: | p1@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDK5RAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000345313, ENST00000349780, ENST00000359309, ENST00000360190, ENST00000360822, ENST00000491334, NM_001011649, NM_018249, uc004bkf.2, uc004bkg.2, uc004bkh.1, uc011lxw.1, uc011lxx.1, uc011lxy.1, uc011lxz.1, uc011lya.1_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | E9PCD3Q96SN8B3KVI2Q05CZ3Q7Z3M0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 6.10e-21 | 114 |
nervous system | 1.48e-13 | 89 |
organ system subdivision | 3.18e-13 | 223 |
neural tube | 1.02e-12 | 56 |
neural rod | 1.02e-12 | 56 |
future spinal cord | 1.02e-12 | 56 |
neural keel | 1.02e-12 | 56 |
central nervous system | 2.52e-12 | 81 |
brain | 2.79e-12 | 68 |
future brain | 2.79e-12 | 68 |
regional part of nervous system | 6.22e-12 | 53 |
regional part of brain | 6.22e-12 | 53 |
regional part of forebrain | 2.25e-10 | 41 |
forebrain | 2.25e-10 | 41 |
anterior neural tube | 2.25e-10 | 41 |
future forebrain | 2.25e-10 | 41 |
ectoderm-derived structure | 3.91e-10 | 171 |
ectoderm | 3.91e-10 | 171 |
presumptive ectoderm | 3.91e-10 | 171 |
neurectoderm | 1.31e-09 | 86 |
neural plate | 2.97e-09 | 82 |
presumptive neural plate | 2.97e-09 | 82 |
brain grey matter | 2.36e-08 | 34 |
gray matter | 2.36e-08 | 34 |
telencephalon | 3.92e-08 | 34 |
regional part of telencephalon | 1.53e-07 | 32 |
ecto-epithelium | 1.98e-07 | 104 |
cerebral hemisphere | 3.99e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.50e-17 | 235 |
disease of cellular proliferation | 5.35e-16 | 239 |
cell type cancer | 1.11e-13 | 143 |
carcinoma | 5.75e-11 | 106 |
organ system cancer | 2.09e-07 | 137 |