FFCP PHASE1:Hg19::chr8:103136481..103136506,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:103136481..103136506,- to FFCP PHASE1:Hg19::chr8:103136481..103136506,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83988 | |EntrezGene=83988 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7655 | |HGNC=7655 | ||
|TSSclassifier=strong | |||
|UniProt=E5RHE8,E5RJT1,E5RI95 | |UniProt=E5RHE8,E5RJT1,E5RI95 | ||
|association_with_transcript=0bp_to_ENST00000517639,ENST00000517822,ENST00000518952,ENST00000523923,ENST00000524209_5end | |||
|cluster_id=chr8:103136481..103136506,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_2_at_NCALD_5end | |||
|id=chr8:103136481..103136506,- | |||
|ontology_enrichment_celltype=CL:0000791!8.32e-09!18;CL:0000789!8.32e-09!18;CL:0002420!8.32e-09!18;CL:0002419!8.32e-09!18;CL:0000790!8.32e-09!18;CL:0000084!2.40e-07!25;CL:0000827!2.40e-07!25;CL:0000625!4.23e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.63e-09;18!CL:0000789;1.63e-09;18!CL:0002419;1.63e-09;18!CL:0000625;5.95e-09;11!CL:0000084;2.13e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.25e-09,18;CL:0000789,1.25e-09,18;CL:0002420,1.25e-09,18;CL:0002419,1.25e-09,18;CL:0000790,1.25e-09,18;CL:0000625,4.75e-09,11;CL:0000084,1.40e-08,25;CL:0000827,1.40e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.63e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.08e-27!115;UBERON:0001869!1.67e-16!32;UBERON:0001893!2.01e-16!34;UBERON:0002619!2.92e-16!22;UBERON:0002780!3.11e-16!41;UBERON:0001890!3.11e-16!41;UBERON:0006240!3.11e-16!41;UBERON:0002791!9.79e-16!33;UBERON:0001950!1.02e-15!20;UBERON:0002020!1.45e-15!34;UBERON:0003528!1.45e-15!34;UBERON:0003080!2.35e-15!42;UBERON:0000956!6.35e-15!25;UBERON:0000203!6.35e-15!25;UBERON:0001049!1.49e-13!57;UBERON:0005068!1.49e-13!57;UBERON:0006241!1.49e-13!57;UBERON:0007135!1.49e-13!57;UBERON:0001017!2.46e-12!82;UBERON:0002616!1.15e-11!59;UBERON:0005743!2.45e-11!86;UBERON:0000955!4.86e-10!69;UBERON:0006238!4.86e-10!69;UBERON:0000073!3.80e-09!94;UBERON:0001016!3.80e-09!94;UBERON:0003075!1.10e-07!86;UBERON:0007284!1.10e-07!86;UBERON:0003056!1.67e-07!61;UBERON:0000153!9.17e-07!129;UBERON:0007811!9.17e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.49e-21;22!UBERON:0001950;9.17e-21;20!UBERON:0000956;7.86e-18;25!UBERON:0000203;7.86e-18;25!UBERON:0001869;1.81e-17;32!UBERON:0001893;2.60e-16;34!UBERON:0002791;1.18e-15;32!UBERON:0003528;7.01e-15;34!UBERON:0002020;7.01e-15;34!UBERON:0002780;1.32e-13;41!UBERON:0001890;1.32e-13;41!UBERON:0000073;4.63e-08;53!UBERON:0002616;4.63e-08;53!UBERON:0001871;1.22e-07;6!UBERON:0000200;3.95e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.63e-24,114;UBERON:0002619,2.02e-21,22;UBERON:0001950,1.11e-20,20;UBERON:0001869,5.40e-19,32;UBERON:0001893,1.66e-18,34;UBERON:0002780,1.01e-17,41;UBERON:0001890,1.01e-17,41;UBERON:0003080,1.01e-17,41;UBERON:0006240,1.01e-17,41;UBERON:0000956,1.02e-17,25;UBERON:0000203,1.02e-17,25;UBERON:0002791,3.56e-17,32;UBERON:0003528,1.34e-16,34;UBERON:0002020,1.34e-16,34;UBERON:0001049,1.02e-13,56;UBERON:0005068,1.02e-13,56;UBERON:0006241,1.02e-13,56;UBERON:0007135,1.02e-13,56;UBERON:0000073,2.54e-13,53;UBERON:0002616,2.54e-13,53;UBERON:0001017,9.63e-12,81;UBERON:0000955,5.27e-10,68;UBERON:0006238,5.27e-10,68;UBERON:0001016,1.27e-09,89;UBERON:0003056,8.88e-09,61;UBERON:0003075,4.33e-08,82;UBERON:0007284,4.33e-08,82;UBERON:0001871,1.29e-07,6;UBERON:0002346,3.84e-07,86;UBERON:0000200,4.00e-07,6 | |||
|phase1_expression=1.63510541343501,2.35510576280081,1.12763523276777,6.00439790118782,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,0,0.263766978228454,0.123766352960047,0,1.34465029290355,0,1.46062018077475,0.487932798790507,0.123121058076788,0,0,0.286235987131057,0.273748850145768,0.627713197974014,3.59143007015371,3.9408282935974,2.75487734597877,2.36018566109342,9.21190555433311,3.2511385896376,0,0,0.369754010166788,0,0,1.46800219667424,4.43196326825502,2.4065333696417,4.34021741431704,0,0.32389366601898,0.515151135268373,0,0,0,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0.622822248995575,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,0,1.7703879310245,4.32311839024081,3.70082698199117,5.18278135711102,0.977766799900771,0,1.94826728407911,6.90744832688076,3.24066498222321,4.65221178625604,4.60366568400527,2.81800903396485,3.64166173167659,5.26201294731764,7.73780049800375,7.24507714337631,0.444859689486181,4.0131124213457,0,10.0845315000834,5.3650869104269,3.77990190030893,10.1207876807801,2.86708872891687,5.20866763085135,2.85135613334512,4.51725357233318,6.2713439465665,7.49584359314075,6.15620855314444,3.28451198768419,13.1044383096076,12.5696892018248,7.53086900190555,0,0,0.511450247374121,0.722878304769133,0,0,0,1.45990461090791,0.283604451492204,0.221729397462564,0.351339142772504,5.37014209540622,0,0,0.324547393654683,0,0,0.238490624305342,0,0,0,1.72046919021225,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,3.87780264148325,0,0.496971951695318,2.15271869829786,0,0,0.354668382198357,0.560677600142307,0,0,0.933633106199299,0,0,0,0.576175924479999,0,1.24864030732128,0.570471821544449,5.08125513876124,0.822041490506354,1.29498355494505,1.12360645361799,0.61246251376468,0,0.103325781175765,1.18800285728205,0,0,0,0.505008341862199,0.375355559615893,0,0.438977620880838,0.919463387397059,0.901428353439581,0.340296549480063,2.51145489964407,1.06778694409284,0.847727604638247,0.900273288253207,1.33968288009971,2.31876486041066,2.41951913231067,4.55696097051419,4.77441325289873,0.504867548488229,1.38074847963449,0.80823028409406,1.42003837006646,2.21654616100809,0.847802961552438,0.57978255948989,0.545492241181669,0.573609190778008,0.243947412259191,0.132529768321485,0.464775771478074,1.24393266018445,0.252320850875628,0.36497735907583,4.69348596989448,1.28648187638577,1.38134921352481,3.71494342425583,0.721879481669586,0,0,0,0,0,0,0.134831308160164,0,0,0.738155454624648,0,0.4115740113314,0,1.26755034821831,0,1.77236972004421,1.32438929824395,0,0,0,0,0.100528972411631,0,0,0,0,0.927443239800615,0.234817388471643,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0.492663237895943,0,2.07328115540772,1.8735593944205,1.13618190083742,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0.43596006883328,0.22001485746285,0,0,0,5.05282421511254,5.2003718455683,0.257207374262142,0,0,0,0,0,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.479249710983165,2.29723871668228,2.85273810081437,0.144781306667579,0.205476322550383,0.358121926479791,0.672510863961164,20.0971375405966,16.6033232641828,20.7915718773192,0.254094624222463,7.8083912314573,3.09315525111078,4.85797169469611,3.82763250991898,0,0,0.828831026872071,0.49076596687656,0,0,0.207970861530807,0,0.473107245101804,0,1.20378439891088,0,1.03473071292505,0.664225598535437,0.553107505625109,1.56390506042549,0,0,4.54889657470352,3.66714141391649,5.44310544797566,0,0,0.30239029332968,1.73675465473144,3.83654933220156,2.24528075546459,1.66580894032411,1.53512174720011,0.804269605718038,2.96836132889982,2.00472601943452,1.06537035187876,3.20295908453856,0.519254429183621,2.90525946149898,0,0.200506470303285,0.644566922551274,0,0,0,1.80479845162965,1.38627606787947,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,6.11703055308092,15.7904441696458,0.671624264166535,0,0,0,0,0,1.13345112812495,0.54941678891006,0.577566499444116,0,0,0,1.35339005608971,0.462145851343933,0.307007349452259,1.10269257987624,1.18162269355101,0.725083469571143,0.852266274161009,1.86967274858148,0,0,0.127612712494584,0.10115778085555,0.464845549297286,0.31481234683064,2.7881490806424,0,0.532306030317022,4.34966496037536,0.74129687641568,0,0.372158369359667,0,0.571890581771475,0,0,2.22742273548156,0,0.359744915166629,0,0.117812402345686,0.202182481573316,0,0,0,0.974853958525138,0,0.545999645631943,0,1.13008116620243,1.10273068709225,0.66343897524122,0.438450885253763,0,0.655894752046633,0.405820753925408,0.30982349809975,0.845086807596724,0,0,0.35667105148125,0.354761064070598,0.633322905892992,0.987884678879706,0,0,0,0,0,1.41215701165169,0,1.68471475667626,0,0.689170200620878,2.02979043692868,3.82318603571188,2.84823593587081,4.2881719582402,2.87953591160336,3.24236655596359,3.7802200606668,0.79312517629427,0.106824071127473,0,0,0,0,0.213425530045242,0,0,1.34053759092657,2.75175657541048,0.324621940274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| ||
|short_description=p2@NCALD | |||
}} | }} |
Latest revision as of 22:01, 24 September 2015
Short description: | p2@NCALD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NCALD_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000517639, ENST00000517822, ENST00000518952, ENST00000523923, ENST00000524209_5end |
EntrezGene: | NCALD |
HGNC: | 7655 |
UniProt: | E5RHE8E5RJT1E5RI95 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.25e-09 | 18 |
alpha-beta T cell | 1.25e-09 | 18 |
immature T cell | 1.25e-09 | 18 |
mature T cell | 1.25e-09 | 18 |
immature alpha-beta T cell | 1.25e-09 | 18 |
CD8-positive, alpha-beta T cell | 4.75e-09 | 11 |
T cell | 1.40e-08 | 25 |
pro-T cell | 1.40e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.63e-24 | 114 |
regional part of cerebral cortex | 2.02e-21 | 22 |
neocortex | 1.11e-20 | 20 |
cerebral hemisphere | 5.40e-19 | 32 |
telencephalon | 1.66e-18 | 34 |
regional part of forebrain | 1.01e-17 | 41 |
forebrain | 1.01e-17 | 41 |
anterior neural tube | 1.01e-17 | 41 |
future forebrain | 1.01e-17 | 41 |
cerebral cortex | 1.02e-17 | 25 |
pallium | 1.02e-17 | 25 |
regional part of telencephalon | 3.56e-17 | 32 |
brain grey matter | 1.34e-16 | 34 |
gray matter | 1.34e-16 | 34 |
neural tube | 1.02e-13 | 56 |
neural rod | 1.02e-13 | 56 |
future spinal cord | 1.02e-13 | 56 |
neural keel | 1.02e-13 | 56 |
regional part of nervous system | 2.54e-13 | 53 |
regional part of brain | 2.54e-13 | 53 |
central nervous system | 9.63e-12 | 81 |
brain | 5.27e-10 | 68 |
future brain | 5.27e-10 | 68 |
nervous system | 1.27e-09 | 89 |
pre-chordal neural plate | 8.88e-09 | 61 |
neural plate | 4.33e-08 | 82 |
presumptive neural plate | 4.33e-08 | 82 |
temporal lobe | 1.29e-07 | 6 |
neurectoderm | 3.84e-07 | 86 |
gyrus | 4.00e-07 | 6 |