FFCP PHASE1:Hg19::chr1:100111337..100111348,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:100111337..100111348,+
|short_description=p9@PALMD
|description=CAGE_peak_9_at_PALMD_5end
|association_with_transcript=-82bp_to_NM_017734,uc001dsf.2,uc001d...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54873 | |EntrezGene=54873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15846 | |HGNC=15846 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP74 | |UniProt=Q9NP74 | ||
|association_with_transcript=-82bp_to_NM_017734,uc001dsf.2,uc001dsg.2_5end | |||
|cluster_id=chr1:100111337..100111348,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_9_at_PALMD_5end | |||
|id=chr1:100111337..100111348,+ | |||
|ontology_enrichment_celltype=CL:0002139!1.20e-15!24;CL:0000115!2.85e-10!35;CL:0005020!1.35e-09!6;CL:0002138!1.35e-09!6;CL:0005022!1.35e-09!6;CL:0000071!7.90e-09!18;CL:0002546!7.90e-09!18;CL:0002078!3.97e-08!44 | |||
|ontology_enrichment_celltype_v019=CL:0002138;4.24e-17;6!CL:0002139;2.15e-11;24!CL:0000115;9.27e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.81e-17,6;CL:0002138,2.81e-17,6;CL:0005022,2.81e-17,6;CL:0002139,1.94e-11,24;CL:0000115,1.37e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;4.24e-17;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.68e-19!115;UBERON:0004111!4.02e-13!241;UBERON:0000477!1.96e-12!286;UBERON:0002298!8.87e-10!8;UBERON:0000025!2.38e-09!194;UBERON:0003075!6.16e-09!86;UBERON:0007284!6.16e-09!86;UBERON:0001986!7.90e-09!18;UBERON:0004638!7.90e-09!18;UBERON:0004852!7.90e-09!18;UBERON:0000955!1.44e-08!69;UBERON:0006238!1.44e-08!69;UBERON:0002346!3.60e-08!90;UBERON:0001049!5.26e-08!57;UBERON:0005068!5.26e-08!57;UBERON:0006241!5.26e-08!57;UBERON:0007135!5.26e-08!57;UBERON:0000487!5.36e-08!22;UBERON:0000153!5.49e-08!129;UBERON:0007811!5.49e-08!129;UBERON:0000033!1.44e-07!123;UBERON:0002616!1.56e-07!59;UBERON:0000467!3.37e-07!625;UBERON:0000480!3.87e-07!626;UBERON:0002465!5.94e-07!10;UBERON:0001473!6.41e-07!8;UBERON:0004536!6.41e-07!8;UBERON:0006558!6.41e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.59e-13;8!UBERON:0004536;5.59e-13;8!UBERON:0006558;5.59e-13;8!UBERON:0002426;2.32e-12;1!UBERON:0003831;2.32e-12;1!UBERON:0003898;2.32e-12;1!UBERON:0004830;2.32e-12;1!UBERON:0003830;2.32e-12;1!UBERON:0005175;2.32e-12;1!UBERON:0001774;2.32e-12;1!UBERON:0001103;2.32e-12;1!UBERON:0002465;1.69e-10;10!UBERON:0006562;8.28e-07;2!UBERON:0005090;8.28e-07;2!UBERON:0001630;8.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,4.11e-13,8;UBERON:0004536,4.11e-13,8;UBERON:0006558,4.11e-13,8;UBERON:0002426,1.25e-12,1;UBERON:0003831,1.25e-12,1;UBERON:0003898,1.25e-12,1;UBERON:0004830,1.25e-12,1;UBERON:0003830,1.25e-12,1;UBERON:0005175,1.25e-12,1;UBERON:0001774,1.25e-12,1;UBERON:0001103,1.25e-12,1;UBERON:0010084,1.25e-12,1;UBERON:0002465,1.33e-10,10;UBERON:0005090,6.07e-07,2;UBERON:0001630,6.07e-07,2 | |||
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| ||
|short_description=p9@PALMD | |||
}} | }} |
Latest revision as of 03:04, 25 September 2015
Short description: | p9@PALMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_PALMD_5end |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | -82bp_to_NM_017734, uc001dsf.2, uc001dsg.2_5end |
EntrezGene: | PALMD |
HGNC: | 15846 |
UniProt: | Q9NP74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.81e-17 | 6 |
endothelial cell of lymphatic vessel | 2.81e-17 | 6 |
vascular lymphangioblast | 2.81e-17 | 6 |
endothelial cell of vascular tree | 1.94e-11 | 24 |
endothelial cell | 1.37e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 4.11e-13 | 8 |
lymph vasculature | 4.11e-13 | 8 |
lymphatic part of lymphoid system | 4.11e-13 | 8 |
chest muscle | 1.25e-12 | 1 |
respiratory system muscle | 1.25e-12 | 1 |
skeletal muscle of trunk | 1.25e-12 | 1 |
respiratory system skeletal muscle | 1.25e-12 | 1 |
thoracic segment muscle | 1.25e-12 | 1 |
chest organ | 1.25e-12 | 1 |
muscle of trunk | 1.25e-12 | 1 |
diaphragm | 1.25e-12 | 1 |
future diaphragm | 1.25e-12 | 1 |
lymphoid system | 1.33e-10 | 10 |
muscle structure | 6.07e-07 | 2 |
muscle organ | 6.07e-07 | 2 |