FFCP PHASE1:Hg19::chr19:11071546..11071624,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6597 | |EntrezGene=6597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11100 | |HGNC=11100 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBD4,F5H0X5,P51532,A7E2E1,A5D6X0 | |UniProt=Q9HBD4,F5H0X5,P51532,A7E2E1,A5D6X0 | ||
|association_with_transcript=0bp_to_ENST00000358026,ENST00000421844,ENST00000429416,NM_001128844,NM_003072,uc002mqe.2,uc002mqf.3,uc010dxo.2,uc010dxp.2_5end | |association_with_transcript=0bp_to_ENST00000358026,ENST00000421844,ENST00000429416,NM_001128844,NM_003072,uc002mqe.2,uc002mqf.3,uc010dxo.2,uc010dxp.2_5end | ||
|cluster_id=chr19:11071546..11071624,+ | |||
|description=CAGE_peak_2_at_SMARCA4_5end | |description=CAGE_peak_2_at_SMARCA4_5end | ||
|id=chr19:11071546..11071624,+ | |id=chr19:11071546..11071624,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.25e-23!115;UBERON:0001049!1.84e-14!57;UBERON:0005068!1.84e-14!57;UBERON:0006241!1.84e-14!57;UBERON:0007135!1.84e-14!57;UBERON:0002346!2.90e-12!90;UBERON:0003075!3.42e-12!86;UBERON:0007284!3.42e-12!86;UBERON:0005743!6.51e-12!86;UBERON:0000073!1.03e-11!94;UBERON:0001016!1.03e-11!94;UBERON:0000955!2.71e-11!69;UBERON:0006238!2.71e-11!69;UBERON:0002616!4.26e-11!59;UBERON:0001017!8.53e-11!82;UBERON:0002780!9.47e-11!41;UBERON:0001890!9.47e-11!41;UBERON:0006240!9.47e-11!41;UBERON:0003080!1.94e-10!42;UBERON:0001893!2.99e-09!34;UBERON:0003056!3.87e-09!61;UBERON:0001869!6.04e-09!32;UBERON:0001950!6.40e-09!20;UBERON:0002020!6.41e-09!34;UBERON:0003528!6.41e-09!34;UBERON:0002619!8.09e-09!22;UBERON:0002791!9.38e-09!33;UBERON:0000956!1.46e-07!25;UBERON:0000203!1.46e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;9.62e-09;20!UBERON:0002619;1.54e-08;22!UBERON:0000073;1.96e-08;53!UBERON:0002616;1.96e-08;53!UBERON:0001893;3.24e-08;34!UBERON:0001869;6.03e-08;32!UBERON:0003528;8.81e-08;34!UBERON:0002020;8.81e-08;34!UBERON:0002780;1.18e-07;41!UBERON:0001890;1.18e-07;41!UBERON:0000956;1.59e-07;25!UBERON:0000203;1.59e-07;25!UBERON:0002791;1.98e-07;32!UBERON:0007023;8.92e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.93e-22,114;UBERON:0001049,8.70e-15,56;UBERON:0005068,8.70e-15,56;UBERON:0006241,8.70e-15,56;UBERON:0007135,8.70e-15,56;UBERON:0000073,2.43e-14,53;UBERON:0002616,2.43e-14,53;UBERON:0002346,4.98e-12,86;UBERON:0003075,5.76e-12,82;UBERON:0007284,5.76e-12,82;UBERON:0000955,1.64e-11,68;UBERON:0006238,1.64e-11,68;UBERON:0001017,5.60e-11,81;UBERON:0001016,8.57e-11,89;UBERON:0002780,9.46e-11,41;UBERON:0001890,9.46e-11,41;UBERON:0003080,9.46e-11,41;UBERON:0006240,9.46e-11,41;UBERON:0003056,1.85e-09,61;UBERON:0001893,2.99e-09,34;UBERON:0001869,6.03e-09,32;UBERON:0001950,6.39e-09,20;UBERON:0003528,6.41e-09,34;UBERON:0002020,6.41e-09,34;UBERON:0002619,8.08e-09,22;UBERON:0002791,2.50e-08,32;UBERON:0000956,1.46e-07,25;UBERON:0000203,1.46e-07,25;UBERON:0010371,3.67e-07,104 | |||
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| ||
|short_description=p2@SMARCA4 | |short_description=p2@SMARCA4 | ||
}} | }} |
Latest revision as of 03:55, 25 September 2015
Short description: | p2@SMARCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMARCA4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000358026, ENST00000421844, ENST00000429416, NM_001128844, NM_003072, uc002mqe.2, uc002mqf.3, uc010dxo.2, uc010dxp.2_5end |
EntrezGene: | SMARCA4 |
HGNC: | 11100 |
UniProt: | Q9HBD4F5H0X5P51532A7E2E1A5D6X0 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.93e-22 | 114 |
neural tube | 8.70e-15 | 56 |
neural rod | 8.70e-15 | 56 |
future spinal cord | 8.70e-15 | 56 |
neural keel | 8.70e-15 | 56 |
regional part of nervous system | 2.43e-14 | 53 |
regional part of brain | 2.43e-14 | 53 |
neurectoderm | 4.98e-12 | 86 |
neural plate | 5.76e-12 | 82 |
presumptive neural plate | 5.76e-12 | 82 |
brain | 1.64e-11 | 68 |
future brain | 1.64e-11 | 68 |
central nervous system | 5.60e-11 | 81 |
nervous system | 8.57e-11 | 89 |
regional part of forebrain | 9.46e-11 | 41 |
forebrain | 9.46e-11 | 41 |
anterior neural tube | 9.46e-11 | 41 |
future forebrain | 9.46e-11 | 41 |
pre-chordal neural plate | 1.85e-09 | 61 |
telencephalon | 2.99e-09 | 34 |
cerebral hemisphere | 6.03e-09 | 32 |
neocortex | 6.39e-09 | 20 |
brain grey matter | 6.41e-09 | 34 |
gray matter | 6.41e-09 | 34 |
regional part of cerebral cortex | 8.08e-09 | 22 |
regional part of telencephalon | 2.50e-08 | 32 |
cerebral cortex | 1.46e-07 | 25 |
pallium | 1.46e-07 | 25 |
ecto-epithelium | 3.67e-07 | 104 |