FFCP PHASE1:Hg19::chr6:138752021..138752035,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57224 | |EntrezGene=57224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21021 | |HGNC=21021 | ||
|TSSclassifier=strong | |||
|UniProt=B4DS58 | |UniProt=B4DS58 | ||
|association_with_transcript=0bp_to_AK299585_5end | |association_with_transcript=0bp_to_AK299585_5end | ||
|cluster_id=chr6:138752021..138752035,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_28_at_NHSL1_5end | |description=CAGE_peak_28_at_NHSL1_5end | ||
|id=chr6:138752021..138752035,- | |id=chr6:138752021..138752035,- | ||
|ontology_enrichment_celltype=CL:0000047!6.40e-07!8 | |ontology_enrichment_celltype=CL:0000047!6.40e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;5.88e-30;6!CL:0000404;5.88e-30;6!CL:0002319;4.93e-12;25!CL:0000047;3.02e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.75e-39,8;CL:0000540,5.60e-30,6;CL:0000031,5.60e-30,6;CL:0000404,5.60e-30,6;CL:0002319,4.86e-12,25 | |||
|ontology_enrichment_development_v019=CL:0000031;5.88e-30;6 | |||
|ontology_enrichment_disease=DOID:114!1.87e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| ||
|short_description=p28@NHSL1 | |short_description=p28@NHSL1 | ||
}} | }} |
Latest revision as of 04:58, 25 September 2015
Short description: | p28@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_NHSL1_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_AK299585_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | B4DS58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.75e-39 | 8 |
neuron | 5.60e-30 | 6 |
neuroblast | 5.60e-30 | 6 |
electrically signaling cell | 5.60e-30 | 6 |
neural cell | 4.86e-12 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.28e-19 | 81 |
nervous system | 4.82e-17 | 89 |
regional part of cerebral cortex | 2.94e-14 | 22 |
cerebral cortex | 1.17e-12 | 25 |
pallium | 1.17e-12 | 25 |
Ammon's horn | 4.52e-11 | 2 |
lobe parts of cerebral cortex | 4.52e-11 | 2 |
hippocampal formation | 4.52e-11 | 2 |
limbic lobe | 4.52e-11 | 2 |
regional part of telencephalon | 4.75e-10 | 32 |
cerebral hemisphere | 4.75e-10 | 32 |
brain grey matter | 1.71e-09 | 34 |
gray matter | 1.71e-09 | 34 |
telencephalon | 1.71e-09 | 34 |
neocortex | 2.83e-09 | 20 |
ectoderm-derived structure | 8.50e-09 | 171 |
ectoderm | 8.50e-09 | 171 |
presumptive ectoderm | 8.50e-09 | 171 |
organ system subdivision | 2.87e-08 | 223 |
regional part of forebrain | 5.80e-08 | 41 |
forebrain | 5.80e-08 | 41 |
anterior neural tube | 5.80e-08 | 41 |
future forebrain | 5.80e-08 | 41 |
duodenum | 5.93e-08 | 2 |
brain | 3.02e-07 | 68 |
future brain | 3.02e-07 | 68 |