FFCP PHASE1:Hg19::chr6:139309345..139309376,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:139309345..139309376,-
|short_description=p3@REPS1
|description=CAGE_peak_3_at_REPS1_5end
|association_with_transcript=0bp_to_ENST00000367668,ENST000004455...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=85021 | |EntrezGene=85021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15578 | |HGNC=15578 | ||
|TSSclassifier=strong | |||
|UniProt=Q96D71,F2Z3L2 | |UniProt=Q96D71,F2Z3L2 | ||
|association_with_transcript=0bp_to_ENST00000367668,ENST00000445570_5end | |||
|cluster_id=chr6:139309345..139309376,- | |||
|description=CAGE_peak_3_at_REPS1_5end | |||
|id=chr6:139309345..139309376,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.41e-18!57;UBERON:0005068!1.41e-18!57;UBERON:0006241!1.41e-18!57;UBERON:0007135!1.41e-18!57;UBERON:0002780!2.11e-17!41;UBERON:0001890!2.11e-17!41;UBERON:0006240!2.11e-17!41;UBERON:0003080!5.35e-17!42;UBERON:0002616!5.37e-17!59;UBERON:0001017!1.18e-16!82;UBERON:0005743!4.94e-16!86;UBERON:0000073!2.55e-15!94;UBERON:0001016!2.55e-15!94;UBERON:0001893!4.51e-15!34;UBERON:0001869!1.34e-14!32;UBERON:0002791!1.95e-14!33;UBERON:0000955!2.48e-14!69;UBERON:0006238!2.48e-14!69;UBERON:0002020!1.29e-13!34;UBERON:0003528!1.29e-13!34;UBERON:0003075!2.82e-13!86;UBERON:0007284!2.82e-13!86;UBERON:0000956!4.52e-13!25;UBERON:0000203!4.52e-13!25;UBERON:0007023!5.47e-13!115;UBERON:0004121!8.03e-13!169;UBERON:0002346!4.99e-12!90;UBERON:0000924!5.00e-12!173;UBERON:0006601!5.00e-12!173;UBERON:0003056!6.49e-12!61;UBERON:0002619!1.46e-11!22;UBERON:0001950!1.37e-10!20;UBERON:0000033!3.81e-09!123;UBERON:0000153!4.66e-09!129;UBERON:0007811!4.66e-09!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;5.63e-14;34!UBERON:0001869;5.86e-14;32!UBERON:0002791;1.31e-13;32!UBERON:0002780;1.60e-13;41!UBERON:0001890;1.60e-13;41!UBERON:0000956;3.36e-13;25!UBERON:0000203;3.36e-13;25!UBERON:0003528;5.89e-13;34!UBERON:0002020;5.89e-13;34!UBERON:0000073;7.57e-12;53!UBERON:0002616;7.57e-12;53!UBERON:0002619;1.22e-11;22!UBERON:0001950;1.32e-10;20!UBERON:0001017;4.24e-08;75!UBERON:0000955;5.51e-08;68!UBERON:0001016;4.56e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,5.69e-19,56;UBERON:0005068,5.69e-19,56;UBERON:0006241,5.69e-19,56;UBERON:0007135,5.69e-19,56;UBERON:0000073,6.18e-19,53;UBERON:0002616,6.18e-19,53;UBERON:0002780,1.20e-17,41;UBERON:0001890,1.20e-17,41;UBERON:0003080,1.20e-17,41;UBERON:0006240,1.20e-17,41;UBERON:0001017,5.38e-17,81;UBERON:0001016,3.72e-16,89;UBERON:0001893,2.13e-15,34;UBERON:0001869,6.52e-15,32;UBERON:0000955,1.27e-14,68;UBERON:0006238,1.27e-14,68;UBERON:0002791,3.30e-14,32;UBERON:0003075,4.33e-14,82;UBERON:0007284,4.33e-14,82;UBERON:0003528,6.62e-14,34;UBERON:0002020,6.62e-14,34;UBERON:0010371,1.51e-13,104;UBERON:0000956,2.39e-13,25;UBERON:0000203,2.39e-13,25;UBERON:0003056,8.32e-13,61;UBERON:0002346,9.24e-13,86;UBERON:0004121,1.56e-12,171;UBERON:0000924,1.56e-12,171;UBERON:0006601,1.56e-12,171;UBERON:0007023,2.58e-12,114;UBERON:0002619,8.38e-12,22;UBERON:0001950,8.29e-11,20;UBERON:0010314,5.82e-10,132 | |||
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| ||
|short_description=p3@REPS1 | |||
}} | }} |
Latest revision as of 05:38, 25 September 2015
Short description: | p3@REPS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_REPS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367668, ENST00000445570_5end |
EntrezGene: | REPS1 |
HGNC: | 15578 |
UniProt: | Q96D71F2Z3L2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 5.69e-19 | 56 |
neural rod | 5.69e-19 | 56 |
future spinal cord | 5.69e-19 | 56 |
neural keel | 5.69e-19 | 56 |
regional part of nervous system | 6.18e-19 | 53 |
regional part of brain | 6.18e-19 | 53 |
regional part of forebrain | 1.20e-17 | 41 |
forebrain | 1.20e-17 | 41 |
anterior neural tube | 1.20e-17 | 41 |
future forebrain | 1.20e-17 | 41 |
central nervous system | 5.38e-17 | 81 |
nervous system | 3.72e-16 | 89 |
telencephalon | 2.13e-15 | 34 |
cerebral hemisphere | 6.52e-15 | 32 |
brain | 1.27e-14 | 68 |
future brain | 1.27e-14 | 68 |
regional part of telencephalon | 3.30e-14 | 32 |
neural plate | 4.33e-14 | 82 |
presumptive neural plate | 4.33e-14 | 82 |
brain grey matter | 6.62e-14 | 34 |
gray matter | 6.62e-14 | 34 |
ecto-epithelium | 1.51e-13 | 104 |
cerebral cortex | 2.39e-13 | 25 |
pallium | 2.39e-13 | 25 |
pre-chordal neural plate | 8.32e-13 | 61 |
neurectoderm | 9.24e-13 | 86 |
ectoderm-derived structure | 1.56e-12 | 171 |
ectoderm | 1.56e-12 | 171 |
presumptive ectoderm | 1.56e-12 | 171 |
adult organism | 2.58e-12 | 114 |
regional part of cerebral cortex | 8.38e-12 | 22 |
neocortex | 8.29e-11 | 20 |
structure with developmental contribution from neural crest | 5.82e-10 | 132 |