FFCP PHASE1:Hg19::chr12:8850541..8850608,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57494 | |EntrezGene=57494 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29228 | |HGNC=29228 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULI2 | |UniProt=Q9ULI2 | ||
|association_with_transcript=23bp_to_ENST00000357529,NM_020734,uc001quw.2,uc001qux.2,uc010sgl.1_5end | |association_with_transcript=23bp_to_ENST00000357529,NM_020734,uc001quw.2,uc001qux.2,uc010sgl.1_5end | ||
|cluster_id=chr12:8850541..8850608,+ | |||
|description=CAGE_peak_1_at_RIMKLB_5end | |description=CAGE_peak_1_at_RIMKLB_5end | ||
|id=chr12:8850541..8850608,+ | |id=chr12:8850541..8850608,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.26e-07;82 | |ontology_enrichment_development_v019=UBERON:0006601;8.26e-07;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.95e-21!82;UBERON:0000073!4.18e-21!94;UBERON:0001016!4.18e-21!94;UBERON:0001049!8.54e-21!57;UBERON:0005068!8.54e-21!57;UBERON:0006241!8.54e-21!57;UBERON:0007135!8.54e-21!57;UBERON:0005743!6.20e-20!86;UBERON:0007023!8.33e-20!115;UBERON:0002616!2.17e-17!59;UBERON:0000955!4.36e-17!69;UBERON:0006238!4.36e-17!69;UBERON:0003075!1.16e-16!86;UBERON:0007284!1.16e-16!86;UBERON:0002346!1.20e-16!90;UBERON:0002780!3.07e-16!41;UBERON:0001890!3.07e-16!41;UBERON:0006240!3.07e-16!41;UBERON:0003080!2.47e-15!42;UBERON:0002020!5.48e-15!34;UBERON:0003528!5.48e-15!34;UBERON:0001893!5.56e-15!34;UBERON:0002791!1.63e-14!33;UBERON:0001869!2.40e-14!32;UBERON:0000924!3.60e-14!173;UBERON:0006601!3.60e-14!173;UBERON:0004121!5.49e-14!169;UBERON:0000956!5.62e-12!25;UBERON:0000203!5.62e-12!25;UBERON:0002619!6.50e-11!22;UBERON:0000153!1.90e-10!129;UBERON:0007811!1.90e-10!129;UBERON:0003056!3.36e-10!61;UBERON:0000033!4.24e-10!123;UBERON:0001950!1.02e-09!20 | |ontology_enrichment_uberon=UBERON:0001017!2.95e-21!82;UBERON:0000073!4.18e-21!94;UBERON:0001016!4.18e-21!94;UBERON:0001049!8.54e-21!57;UBERON:0005068!8.54e-21!57;UBERON:0006241!8.54e-21!57;UBERON:0007135!8.54e-21!57;UBERON:0005743!6.20e-20!86;UBERON:0007023!8.33e-20!115;UBERON:0002616!2.17e-17!59;UBERON:0000955!4.36e-17!69;UBERON:0006238!4.36e-17!69;UBERON:0003075!1.16e-16!86;UBERON:0007284!1.16e-16!86;UBERON:0002346!1.20e-16!90;UBERON:0002780!3.07e-16!41;UBERON:0001890!3.07e-16!41;UBERON:0006240!3.07e-16!41;UBERON:0003080!2.47e-15!42;UBERON:0002020!5.48e-15!34;UBERON:0003528!5.48e-15!34;UBERON:0001893!5.56e-15!34;UBERON:0002791!1.63e-14!33;UBERON:0001869!2.40e-14!32;UBERON:0000924!3.60e-14!173;UBERON:0006601!3.60e-14!173;UBERON:0004121!5.49e-14!169;UBERON:0000956!5.62e-12!25;UBERON:0000203!5.62e-12!25;UBERON:0002619!6.50e-11!22;UBERON:0000153!1.90e-10!129;UBERON:0007811!1.90e-10!129;UBERON:0003056!3.36e-10!61;UBERON:0000033!4.24e-10!123;UBERON:0001950!1.02e-09!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;3.68e-13;34!UBERON:0002020;3.68e-13;34!UBERON:0001893;4.02e-13;34!UBERON:0001869;4.90e-13;32!UBERON:0002791;6.75e-13;32!UBERON:0000073;2.27e-12;53!UBERON:0002616;2.27e-12;53!UBERON:0002780;4.75e-12;41!UBERON:0001890;4.75e-12;41!UBERON:0000956;5.91e-12;25!UBERON:0000203;5.91e-12;25!UBERON:0002619;6.37e-11;22!UBERON:0001950;1.03e-09;20!UBERON:0001017;3.16e-09;75!UBERON:0001016;1.09e-08;83!UBERON:0000955;2.42e-08;68 | |ontology_enrichment_uberon_v019=UBERON:0003528;3.68e-13;34!UBERON:0002020;3.68e-13;34!UBERON:0001893;4.02e-13;34!UBERON:0001869;4.90e-13;32!UBERON:0002791;6.75e-13;32!UBERON:0000073;2.27e-12;53!UBERON:0002616;2.27e-12;53!UBERON:0002780;4.75e-12;41!UBERON:0001890;4.75e-12;41!UBERON:0000956;5.91e-12;25!UBERON:0000203;5.91e-12;25!UBERON:0002619;6.37e-11;22!UBERON:0001950;1.03e-09;20!UBERON:0001017;3.16e-09;75!UBERON:0001016;1.09e-08;83!UBERON:0000955;2.42e-08;68 | ||
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| ||
|short_description=p1@RIMKLB | |short_description=p1@RIMKLB | ||
}} | }} |
Latest revision as of 05:41, 25 September 2015
Short description: | p1@RIMKLB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RIMKLB_5end |
Coexpression cluster: | NA |
Association with transcript: | 23bp_to_ENST00000357529, NM_020734, uc001quw.2, uc001qux.2, uc010sgl.1_5end |
EntrezGene: | RIMKLB |
HGNC: | 29228 |
UniProt: | Q9ULI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 4.36e-23 | 89 |
central nervous system | 5.47e-22 | 81 |
neural tube | 1.02e-21 | 56 |
neural rod | 1.02e-21 | 56 |
future spinal cord | 1.02e-21 | 56 |
neural keel | 1.02e-21 | 56 |
regional part of nervous system | 2.55e-20 | 53 |
regional part of brain | 2.55e-20 | 53 |
adult organism | 1.88e-19 | 114 |
brain | 8.66e-18 | 68 |
future brain | 8.66e-18 | 68 |
neural plate | 1.97e-16 | 82 |
presumptive neural plate | 1.97e-16 | 82 |
neurectoderm | 2.11e-16 | 86 |
regional part of forebrain | 3.04e-16 | 41 |
forebrain | 3.04e-16 | 41 |
anterior neural tube | 3.04e-16 | 41 |
future forebrain | 3.04e-16 | 41 |
brain grey matter | 5.42e-15 | 34 |
gray matter | 5.42e-15 | 34 |
telencephalon | 5.51e-15 | 34 |
cerebral hemisphere | 2.38e-14 | 32 |
regional part of telencephalon | 4.91e-14 | 32 |
ectoderm-derived structure | 5.35e-14 | 171 |
ectoderm | 5.35e-14 | 171 |
presumptive ectoderm | 5.35e-14 | 171 |
cerebral cortex | 5.58e-12 | 25 |
pallium | 5.58e-12 | 25 |
ecto-epithelium | 5.88e-12 | 104 |
regional part of cerebral cortex | 6.46e-11 | 22 |
pre-chordal neural plate | 9.88e-11 | 61 |
structure with developmental contribution from neural crest | 9.18e-10 | 132 |
neocortex | 1.02e-09 | 20 |