FFCP PHASE1:Mm9::chr10:115455408..115455477,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19279 | |EntrezGene=19279 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q5U1U6,Q62132,Q8CEI8 | |UniProt=Q5U1U6,Q62132,Q8CEI8 | ||
|association_with_transcript=0bp_to_NM_011217,uc007hbp.2_5end | |association_with_transcript=0bp_to_NM_011217,uc007hbp.2_5end | ||
|cluster_id=chr10:115455408..115455477,+ | |||
|description=CAGE_peak_1_at_Ptprr_5end | |description=CAGE_peak_1_at_Ptprr_5end | ||
|id=chr10:115455408..115455477,+ | |id=chr10:115455408..115455477,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.94e-14!33;CL:0000047!4.94e-14!33;CL:0000031!4.94e-14!33;CL:0000404!4.94e-14!33;CL:0000117!3.04e-11!23;CL:0000337!3.04e-11!23;CL:0002319!6.36e-10!43;CL:0000221!7.99e-10!44;CL:0000133!7.99e-10!44;CL:0000393!8.76e-10!39;CL:0000211!8.76e-10!39 | |ontology_enrichment_celltype=CL:0000540!4.94e-14!33;CL:0000047!4.94e-14!33;CL:0000031!4.94e-14!33;CL:0000404!4.94e-14!33;CL:0000117!3.04e-11!23;CL:0000337!3.04e-11!23;CL:0002319!6.36e-10!43;CL:0000221!7.99e-10!44;CL:0000133!7.99e-10!44;CL:0000393!8.76e-10!39;CL:0000211!8.76e-10!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.99e-14,33;CL:0000047,1.99e-14,33;CL:0000031,1.99e-14,33;CL:0000404,1.99e-14,33;CL:0000117,6.89e-12,23;CL:0000337,6.89e-12,23;CL:0000393,2.76e-10,39;CL:0000211,2.76e-10,39;CL:0002319,1.57e-09,43;CL:0000221,4.83e-09,44;CL:0000133,4.83e-09,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.48e-27!73;UBERON:0005743!4.48e-27!73;UBERON:0000073!4.72e-27!75;UBERON:0001016!4.72e-27!75;UBERON:0002346!9.59e-26!71;UBERON:0003075!9.59e-26!71;UBERON:0007284!9.59e-26!71;UBERON:0004121!1.35e-25!102;UBERON:0000924!1.35e-25!102;UBERON:0006601!1.35e-25!102;UBERON:0001049!8.91e-21!52;UBERON:0005068!8.91e-21!52;UBERON:0006241!8.91e-21!52;UBERON:0007135!8.91e-21!52;UBERON:0000955!2.21e-19!50;UBERON:0006238!2.21e-19!50;UBERON:0000033!8.77e-19!63;UBERON:0002616!1.03e-18!49;UBERON:0003056!5.30e-17!49;UBERON:0002020!1.56e-16!34;UBERON:0003080!6.58e-16!40;UBERON:0002780!3.08e-15!39;UBERON:0001890!3.08e-15!39;UBERON:0006240!3.08e-15!39;UBERON:0002791!2.88e-13!29;UBERON:0003528!2.88e-13!29;UBERON:0001893!2.88e-13!29;UBERON:0000956!4.94e-09!21;UBERON:0001869!4.94e-09!21;UBERON:0000203!4.94e-09!21;UBERON:0002619!1.34e-08!17;UBERON:0002021!1.46e-08!10;UBERON:0000411!1.46e-08!10;UBERON:0001950!1.46e-08!10;UBERON:0007811!1.16e-07!86 | |ontology_enrichment_uberon=UBERON:0001017!4.48e-27!73;UBERON:0005743!4.48e-27!73;UBERON:0000073!4.72e-27!75;UBERON:0001016!4.72e-27!75;UBERON:0002346!9.59e-26!71;UBERON:0003075!9.59e-26!71;UBERON:0007284!9.59e-26!71;UBERON:0004121!1.35e-25!102;UBERON:0000924!1.35e-25!102;UBERON:0006601!1.35e-25!102;UBERON:0001049!8.91e-21!52;UBERON:0005068!8.91e-21!52;UBERON:0006241!8.91e-21!52;UBERON:0007135!8.91e-21!52;UBERON:0000955!2.21e-19!50;UBERON:0006238!2.21e-19!50;UBERON:0000033!8.77e-19!63;UBERON:0002616!1.03e-18!49;UBERON:0003056!5.30e-17!49;UBERON:0002020!1.56e-16!34;UBERON:0003080!6.58e-16!40;UBERON:0002780!3.08e-15!39;UBERON:0001890!3.08e-15!39;UBERON:0006240!3.08e-15!39;UBERON:0002791!2.88e-13!29;UBERON:0003528!2.88e-13!29;UBERON:0001893!2.88e-13!29;UBERON:0000956!4.94e-09!21;UBERON:0001869!4.94e-09!21;UBERON:0000203!4.94e-09!21;UBERON:0002619!1.34e-08!17;UBERON:0002021!1.46e-08!10;UBERON:0000411!1.46e-08!10;UBERON:0001950!1.46e-08!10;UBERON:0007811!1.16e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.21e-28,73;UBERON:0001016,8.78e-28,75;UBERON:0002346,4.15e-25,64;UBERON:0003075,4.15e-25,64;UBERON:0007284,4.15e-25,64;UBERON:0000073,1.08e-23,54;UBERON:0004121,9.78e-23,95;UBERON:0000924,9.78e-23,95;UBERON:0006601,9.78e-23,95;UBERON:0001049,3.51e-22,52;UBERON:0005068,3.51e-22,52;UBERON:0006241,3.51e-22,52;UBERON:0007135,3.51e-22,52;UBERON:0010371,5.27e-19,73;UBERON:0000955,1.78e-18,47;UBERON:0006238,1.78e-18,47;UBERON:0002616,9.49e-18,46;UBERON:0003056,1.17e-17,49;UBERON:0002020,1.34e-17,34;UBERON:0003080,2.47e-16,40;UBERON:0002780,1.37e-15,39;UBERON:0001890,1.37e-15,39;UBERON:0006240,1.37e-15,39;UBERON:0010314,1.61e-15,92;UBERON:0003528,6.35e-14,29;UBERON:0002791,6.35e-14,29;UBERON:0001893,6.35e-14,29;UBERON:0002021,1.50e-09,10;UBERON:0000411,1.50e-09,10;UBERON:0001950,1.50e-09,10;UBERON:0002619,2.63e-09,17;UBERON:0000956,3.62e-09,21;UBERON:0001869,3.62e-09,21;UBERON:0000203,3.62e-09,21 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0.194429899074283,0,2.87505128729943,0,0,0.336093799142464,0,0,0,15.9830004079082,23.2756030879694,13.9442908771359,0,0,0,0,0,0.599200221036809,0,2.28117147078651,0.810035629990144,2.10324961351382,27.4224945027651,29.154647405613,5.87955836231779,2.30029130443767,6.43453150627015,47.3498288297371,18.7700386985226,19.6616362567992,11.0784481693363,12.7167824607349,11.4600941522487,16.7509799400829,15.1945904708554,18.7941844765476,42.4265163082082,36.5895219653695,27.2143190904939,0.454357159999104,2.56943304363071,0,0,0.679971333707751,0,0,0,1.26399978118577,0,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0.79928715803342,0,4.60170631100957,4.16364784238726,7.91610243611567,3.45923245884088,7.53613202763113,8.93674174231356,1.88499886994513,0,0,0,0.161766849947409,0.220841518460394,0,3.72783522436244,77.2941304110484,57.1789509600732,2.81002760729451,0,0,0,37.148078572396,32.9400434029411,20.7329680986226,38.2413504423008,30.4301394223093,23.6878370797899,29.0411860891286,0.203678727700633,0,0,4.20883711772948,1.04096354370163,1.83921683546778,1.0803727788321,2.86339153887859,2.31324097114515,3.07472928683639,3.18585863503078,17.8505325809921,0.215567992932842,0.378212160335639,0,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0,0,0,34.2772616159527,20.6838270882362,0.660837565967596,2.3800550999719,0.853153002140936,1.85789337488351,1.9330119198314,2.62188582010345,2.2237804384487,3.61428689613862,1.89811624617805,3.95277491337626,4.02136334080431,4.77495532898762,3.11942539390592,3.59527763461689,2.37751854862164,4.77939055810481,0.189667900953082,1.25673363870702,0,0,0.193952487167626,0.350679099451593,0,0,0,0,0,0,0.196558995113203,0,0.405720242777006,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.947457058852424,0,0,0,0.167506257441816,0.476087281772027,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,23.922037908181,19.6915633474901,0,0,3.78609863299508,7.02789739733949,13.3562506594335,1.67278158566786,3.34198011123591,6.22768367735431,8.09621403349789,13.4437694639203,13.0444966722353,31.8108103257589,0,1.06839362200353,2.28041743095006,0.164970122972535,2.65490276679926,0,0,0.188605079755898,0.590603785761546,0.922305443831782,2.84271122485043,1.45413491791002,1.06949213515416,1.26414703174326,1.05418608574999,1.03135543248187,4.76615448055303,1.26042765821917,0.776152102696527,1.92903331528433,2.12808280370728,3.74574516964348,5.26556865926787,4.87143918583359,0.23467170806371,0.21183207086382,2.42581237860458,0,0.484393280087717,0.120625849856312,0,0.492422699235184,4.66369338607761,21.5093350332191,0,0.206386867963223,0,0,0,0,0,0,0,4.77335309007557,0.316335993581135,1.82987520414164,0.648032044930808,1.88179466413022,1.74690050996942,1.34864346384821,1.98368293740806,3.66458318777641,2.59229946583586,0,0,0,0.330916980914195,0.194451188344048,0.387479470433193,0.506868376472335,0.352071715937262,0,0.314578033277133,0,0,0,0,0.205421914329655,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,2.70465431645067,0,0,0,0,59.8636953174091,54.3183779078469,63.0185064783336,43.994414679984,37.6795385873853,46.8344216381614,39.8263275136765,38.2773022740587,33.0793958558469,43.4918661871529,1.03787347584177,3.19219898720825,5.80494259564056,3.8897074730927,5.03071590307158,2.38996560985018,4.88942801163553,7.0051919461224,7.38114182061175,7.07552192938633,6.84394109703647,5.09291121742406,4.68207537349412,4.92993673517493,6.08815970929501,4.76293691283074,6.14186927507734,4.82273051159263,4.12085900803307,6.47675248591348,7.54312355247914,7.80893547101085,3.57654284920981,6.24989591519013,6.30532848782715,6.43071019976741,4.75612729469209,4.73525480588117,5.29636043998861,7.2948495315506,6.4062909787054,5.91026894253381,5.72923460437565,5.26785260032284,5.5942917184531,9.74261253957989,4.44470056046276,5.58664740525576,4.59091996965224,1.54413993383661,1.85494268496337 | |phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.69790044012167,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0.194429899074283,0,2.87505128729943,0,0,0.336093799142464,0,0,0,15.9830004079082,23.2756030879694,13.9442908771359,0,0,0,0,0,0.599200221036809,0,2.28117147078651,0.810035629990144,2.10324961351382,27.4224945027651,29.154647405613,5.87955836231779,2.30029130443767,6.43453150627015,47.3498288297371,18.7700386985226,19.6616362567992,11.0784481693363,12.7167824607349,11.4600941522487,16.7509799400829,15.1945904708554,18.7941844765476,42.4265163082082,36.5895219653695,27.2143190904939,0.454357159999104,2.56943304363071,0,0,0.679971333707751,0,0,0,1.26399978118577,0,0.259786004602869,0,0.422530259330042,0,0,0,0,0,0,0.79928715803342,0,4.60170631100957,4.16364784238726,7.91610243611567,3.45923245884088,7.53613202763113,8.93674174231356,1.88499886994513,0,0,0,0.161766849947409,0.220841518460394,0,3.72783522436244,77.2941304110484,57.1789509600732,2.81002760729451,0,0,0,37.148078572396,32.9400434029411,20.7329680986226,38.2413504423008,30.4301394223093,23.6878370797899,29.0411860891286,0.203678727700633,0,0,4.20883711772948,1.04096354370163,1.83921683546778,1.0803727788321,2.86339153887859,2.31324097114515,3.07472928683639,3.18585863503078,17.8505325809921,0.215567992932842,0.378212160335639,0,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0,0,0,0.23674473558521,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0,0,0,34.2772616159527,20.6838270882362,0.660837565967596,2.3800550999719,0.853153002140936,1.85789337488351,1.9330119198314,2.62188582010345,2.2237804384487,3.61428689613862,1.89811624617805,3.95277491337626,4.02136334080431,4.77495532898762,3.11942539390592,3.59527763461689,2.37751854862164,4.77939055810481,0.189667900953082,1.25673363870702,0,0,0.193952487167626,0.350679099451593,0,0,0,0,0,0,0.196558995113203,0,0.405720242777006,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.947457058852424,0,0,0,0.167506257441816,0.476087281772027,0.195133647857799,0.157635144106191,0,0,0,0,0,0,0,0,0,23.922037908181,19.6915633474901,0,0,3.78609863299508,7.02789739733949,13.3562506594335,1.67278158566786,3.34198011123591,6.22768367735431,8.09621403349789,13.4437694639203,13.0444966722353,31.8108103257589,0,1.06839362200353,2.28041743095006,0.164970122972535,2.65490276679926,0,0,0.188605079755898,0.590603785761546,0.922305443831782,2.84271122485043,1.45413491791002,1.06949213515416,1.26414703174326,1.05418608574999,1.03135543248187,4.76615448055303,1.26042765821917,0.776152102696527,1.92903331528433,2.12808280370728,3.74574516964348,5.26556865926787,4.87143918583359,0.23467170806371,0.21183207086382,2.42581237860458,0,0.484393280087717,0.120625849856312,0,0.492422699235184,4.66369338607761,21.5093350332191,0,0.206386867963223,0,0,0,0,0,0,0,4.77335309007557,0.316335993581135,1.82987520414164,0.648032044930808,1.88179466413022,1.74690050996942,1.34864346384821,1.98368293740806,3.66458318777641,2.59229946583586,0,0,0,0.330916980914195,0.194451188344048,0.387479470433193,0.506868376472335,0.352071715937262,0,0.314578033277133,0,0,0,0,0.205421914329655,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,2.70465431645067,0,0,0,0,59.8636953174091,54.3183779078469,63.0185064783336,43.994414679984,37.6795385873853,46.8344216381614,39.8263275136765,38.2773022740587,33.0793958558469,43.4918661871529,1.03787347584177,3.19219898720825,5.80494259564056,3.8897074730927,5.03071590307158,2.38996560985018,4.88942801163553,7.0051919461224,7.38114182061175,7.07552192938633,6.84394109703647,5.09291121742406,4.68207537349412,4.92993673517493,6.08815970929501,4.76293691283074,6.14186927507734,4.82273051159263,4.12085900803307,6.47675248591348,7.54312355247914,7.80893547101085,3.57654284920981,6.24989591519013,6.30532848782715,6.43071019976741,4.75612729469209,4.73525480588117,5.29636043998861,7.2948495315506,6.4062909787054,5.91026894253381,5.72923460437565,5.26785260032284,5.5942917184531,9.74261253957989,4.44470056046276,5.58664740525576,4.59091996965224,1.54413993383661,1.85494268496337 | ||
|short_description=p1@Ptprr | |short_description=p1@Ptprr | ||
}} | }} |
Latest revision as of 15:04, 25 September 2015
Short description: | p1@Ptprr |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ptprr_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_NM_011217, uc007hbp.2_5end |
EntrezGene: | Ptprr |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.99e-14 | 33 |
neuronal stem cell | 1.99e-14 | 33 |
neuroblast | 1.99e-14 | 33 |
electrically signaling cell | 1.99e-14 | 33 |
CNS neuron (sensu Vertebrata) | 6.89e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.89e-12 | 23 |
electrically responsive cell | 2.76e-10 | 39 |
electrically active cell | 2.76e-10 | 39 |
neural cell | 1.57e-09 | 43 |
ectodermal cell | 4.83e-09 | 44 |
neurectodermal cell | 4.83e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.21e-28 | 73 |
nervous system | 8.78e-28 | 75 |
neurectoderm | 4.15e-25 | 64 |
neural plate | 4.15e-25 | 64 |
presumptive neural plate | 4.15e-25 | 64 |
regional part of nervous system | 1.08e-23 | 54 |
ectoderm-derived structure | 9.78e-23 | 95 |
ectoderm | 9.78e-23 | 95 |
presumptive ectoderm | 9.78e-23 | 95 |
neural tube | 3.51e-22 | 52 |
neural rod | 3.51e-22 | 52 |
future spinal cord | 3.51e-22 | 52 |
neural keel | 3.51e-22 | 52 |
ecto-epithelium | 5.27e-19 | 73 |
brain | 1.78e-18 | 47 |
future brain | 1.78e-18 | 47 |
regional part of brain | 9.49e-18 | 46 |
pre-chordal neural plate | 1.17e-17 | 49 |
gray matter | 1.34e-17 | 34 |
anterior neural tube | 2.47e-16 | 40 |
regional part of forebrain | 1.37e-15 | 39 |
forebrain | 1.37e-15 | 39 |
future forebrain | 1.37e-15 | 39 |
structure with developmental contribution from neural crest | 1.61e-15 | 92 |
brain grey matter | 6.35e-14 | 29 |
regional part of telencephalon | 6.35e-14 | 29 |
telencephalon | 6.35e-14 | 29 |
occipital lobe | 1.50e-09 | 10 |
visual cortex | 1.50e-09 | 10 |
neocortex | 1.50e-09 | 10 |
regional part of cerebral cortex | 2.63e-09 | 17 |
cerebral cortex | 3.62e-09 | 21 |
cerebral hemisphere | 3.62e-09 | 21 |
pallium | 3.62e-09 | 21 |