FFCP PHASE1:Mm9::chr7:116154364..116154444,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22141 | |EntrezGene=22141 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=P50586,Q4VA41 | |UniProt=P50586,Q4VA41 | ||
|association_with_transcript=0bp_to_NM_021885,uc009jdf.1_5end | |association_with_transcript=0bp_to_NM_021885,uc009jdf.1_5end | ||
|cluster_id=chr7:116154364..116154444,+ | |||
|description=CAGE_peak_1_at_Tub_5end | |description=CAGE_peak_1_at_Tub_5end | ||
|id=chr7:116154364..116154444,+ | |id=chr7:116154364..116154444,+ | ||
|ontology_enrichment_celltype=CL:0000117!2.83e-14!23;CL:0000337!2.83e-14!23;CL:0000540!1.31e-13!33;CL:0000047!1.31e-13!33;CL:0000031!1.31e-13!33;CL:0000404!1.31e-13!33;CL:0000221!2.10e-10!44;CL:0000133!2.10e-10!44;CL:0002319!2.43e-10!43;CL:0000393!3.54e-09!39;CL:0000211!3.54e-09!39;CL:0000055!9.89e-07!50 | |ontology_enrichment_celltype=CL:0000117!2.83e-14!23;CL:0000337!2.83e-14!23;CL:0000540!1.31e-13!33;CL:0000047!1.31e-13!33;CL:0000031!1.31e-13!33;CL:0000404!1.31e-13!33;CL:0000221!2.10e-10!44;CL:0000133!2.10e-10!44;CL:0002319!2.43e-10!43;CL:0000393!3.54e-09!39;CL:0000211!3.54e-09!39;CL:0000055!9.89e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.25e-16,23;CL:0000337,2.25e-16,23;CL:0000540,1.20e-14,33;CL:0000047,1.20e-14,33;CL:0000031,1.20e-14,33;CL:0000404,1.20e-14,33;CL:0000221,1.44e-10,44;CL:0000133,1.44e-10,44;CL:0002319,1.75e-10,43;CL:0000393,2.49e-10,39;CL:0000211,2.49e-10,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.55e-29!71;UBERON:0003075!2.55e-29!71;UBERON:0007284!2.55e-29!71;UBERON:0004121!2.89e-28!102;UBERON:0000924!2.89e-28!102;UBERON:0006601!2.89e-28!102;UBERON:0001017!9.64e-28!73;UBERON:0005743!9.64e-28!73;UBERON:0000073!1.89e-26!75;UBERON:0001016!1.89e-26!75;UBERON:0001049!1.60e-23!52;UBERON:0005068!1.60e-23!52;UBERON:0006241!1.60e-23!52;UBERON:0007135!1.60e-23!52;UBERON:0000033!4.21e-23!63;UBERON:0000955!2.62e-22!50;UBERON:0006238!2.62e-22!50;UBERON:0003056!5.36e-22!49;UBERON:0002616!8.55e-22!49;UBERON:0002020!1.19e-19!34;UBERON:0003080!1.88e-19!40;UBERON:0002780!8.20e-19!39;UBERON:0001890!8.20e-19!39;UBERON:0006240!8.20e-19!39;UBERON:0002791!9.79e-17!29;UBERON:0003528!9.79e-17!29;UBERON:0001893!9.79e-17!29;UBERON:0000956!7.86e-12!21;UBERON:0001869!7.86e-12!21;UBERON:0000203!7.86e-12!21;UBERON:0000153!2.39e-10!94;UBERON:0007811!9.35e-10!86;UBERON:0002619!1.30e-09!17;UBERON:0000468!2.06e-08!333;UBERON:0002021!3.95e-08!10;UBERON:0000411!3.95e-08!10;UBERON:0001950!3.95e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.88e-30,73;UBERON:0002346,2.03e-30,64;UBERON:0003075,2.03e-30,64;UBERON:0007284,2.03e-30,64;UBERON:0001016,8.32e-29,75;UBERON:0000073,2.96e-28,54;UBERON:0004121,5.30e-27,95;UBERON:0000924,5.30e-27,95;UBERON:0006601,5.30e-27,95;UBERON:0001049,1.15e-26,52;UBERON:0005068,1.15e-26,52;UBERON:0006241,1.15e-26,52;UBERON:0007135,1.15e-26,52;UBERON:0010371,1.95e-25,73;UBERON:0003056,3.86e-25,49;UBERON:0000955,3.95e-23,47;UBERON:0006238,3.95e-23,47;UBERON:0002616,1.52e-22,46;UBERON:0002020,2.23e-22,34;UBERON:0003080,3.62e-22,40;UBERON:0002780,2.02e-21,39;UBERON:0001890,2.02e-21,39;UBERON:0006240,2.02e-21,39;UBERON:0010314,4.74e-20,92;UBERON:0003528,5.55e-19,29;UBERON:0002791,5.55e-19,29;UBERON:0001893,5.55e-19,29;UBERON:0000956,2.82e-13,21;UBERON:0001869,2.82e-13,21;UBERON:0000203,2.82e-13,21;UBERON:0002619,1.07e-10,17;UBERON:0002021,3.23e-09,10;UBERON:0000411,3.23e-09,10;UBERON:0001950,3.23e-09,10;UBERON:0002420,6.19e-07,8;UBERON:0007245,6.19e-07,8;UBERON:0010009,6.19e-07,8;UBERON:0010011,6.19e-07,8;UBERON:0000454,6.19e-07,8 | |||
|phase1_expression=0.480446541314382,0,0.454999239389536,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.161190491603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0.65407546914134,1.09843091367236,0.194429899074283,0.139986421625363,1.43752564364972,0,0,0,0,0,0,82.5451160307159,81.4646108078931,72.8906114032106,0,0,0,0,0,2.99600110518405,2.68952813725088,51.6374269296219,54.6774050243347,52.5812403378455,47.7037143954352,52.7875812874356,45.444086508748,44.4722985524617,46.8801581171111,50.6533052597188,56.9485527859937,65.589989700416,123.841224178652,124.606170586482,112.51728804026,45.2276458382237,54.0252105630413,47.8258515541416,63.9344030477859,52.1080351724717,75.678175005072,0.075726193333184,0.0755715601067855,0,0,0,1.07940638327563,0,0,2.10666630197628,0,0,0.35333957451034,2.25349471642689,0,0,0,0,0,0,1.7127581957859,0.517875767294343,29.3915435348353,10.0621489524359,12.1786191324856,10.8389283710347,12.5099791658677,16.4624189989987,10.3046604890334,0,4.19338135067744,0.884610551949874,1.61766849947409,0.662524555381181,0.484875253135222,0,42.7459963636859,35.6059401582874,0.255457055208591,0,0,0,72.4986694719342,53.5275705297793,60.4397433662878,81.5236061701777,68.5317425645286,60.2585329222724,53.8640993384955,1.52759045775474,0.248813941220186,0,5.26104639716185,2.99277018814219,11.2652031172402,16.2055916824814,10.3986324306643,11.9744238506337,13.4519406299092,11.5253121208466,21.2136764005993,2.37124792226126,3.21480336285293,3.69497360744293,1.31517439456545,1.39023624612799,3.1342694986995,1.4404749548556,1.39323986772945,0,0,0,0.414251545071004,0.469052119962192,0.720248245844059,0.710234206755631,0.393528463494808,1.3884040159864,0.232533944750408,0.536546802799238,0.233530684734339,0.493679549740441,0.164167464079095,0.243206428637567,0.584799949701329,0.439100230582101,0,82.643949785702,89.8357266071153,0,0.264450566663544,2.55945900642281,5.10920678092965,4.38149368495117,0.80673409849337,2.2237804384487,1.90225626112559,0,1.97638745668813,2.5133520880027,1.1937388322469,1.36474860983384,0,0,0.199141273254367,1.13800740571849,3.31320686568214,0,0.814605311381257,0.581857461502877,0.771494018793504,0.126473074248515,0,0.156998727841375,0,0,0.667380422864376,0.589676985339609,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,2.27389694124582,1.30371981153621,1.18821560042632,0.469380496577004,0.670025029767263,0.476087281772027,0.585400943573396,1.7339865851681,1.10732344824387,1.2756381492599,0.983179888294428,0.518054945597687,0.433947175744535,0,0,0,0.551873492609465,45.4358169665451,40.6724552474945,0,0,5.67914794949262,1.56175497718655,11.2020166821055,0.716906393857656,2.00518806674155,1.98153571552183,4.04810701674894,8.76767573733936,6.32460444714438,37.5945940213514,0.567760340833074,0.890328018336276,1.30309567482861,0.494910368917606,0,0.971122544619926,0,0.188605079755898,0.885905678642318,0.614870295887855,1.29214146584111,0.363533729477506,0.712994756769443,0.632073515871632,0,0,13.2771446243977,10.443543453816,8.40831444587904,3.64372959553707,2.83744373827638,2.67553226403106,5.10101963866575,8.22055362609418,0,0,0.882113592219848,0.16488625294148,2.09903754704677,1.38719727334758,0.238744688006273,0.820704498725306,0.874442509889552,31.3368760397761,0,0,0.185194527369712,0,0,0,0,0,0,0.954670618015114,2.68885594543965,2.84647253977588,2.16010681643603,1.46361807210128,0.87345025498471,1.88810084938749,1.57041565878138,0.26175594198403,0.129614973291793,0,4.50954350947352,0.149516546043979,0.330916980914195,1.94451188344048,0.904118764344118,0.675824501963113,0.352071715937262,0.781226309063701,2.09718688851422,0.966336483304024,2.59227005632079,0,0.405450430580328,0.616265742988964,0.129920822977795,0.358053391334963,0,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0,0,0,0.226730383615211,0.443971906748129,0.0897138566094757,0.335769232728157,0.579568782096571,0.375364950902364,0.549454872801795,0.214368379079066,0,99.9610761432208,87.4617949363636,88.2259090696671,75.0998406841915,84.9502324515596,92.9134493789332,90.453015031062,89.6139194416199,92.4410514327777,92.6790958035758,5.70830411712972,14.3648954424371,10.7562171625105,12.398442570483,16.5594398476106,19.1197248788015,14.0015438515018,14.0103838922448,12.8367683836726,10.1078884705519,11.1530891951705,17.5422497489051,8.89594320963883,11.0763513660424,10.8553036326109,10.9547548995107,12.7472758539341,12.9249177710682,10.3021475200827,11.9231125308862,13.0290315906458,12.2458306249943,13.5908628269973,14.2439488299682,13.081203877731,13.1998788311015,12.9878860739669,12.6273461490165,12.2223702461276,13.4674145197857,12.3380418849141,12.2145558145699,12.6861623382604,12.0850736125053,10.0311437710194,29.4776481966776,8.18760629558929,10.3138105943183,6.88637995447836,2.64709702943419,2.08681052058379 | |phase1_expression=0.480446541314382,0,0.454999239389536,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.161190491603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.183546752161682,0,0.65407546914134,1.09843091367236,0.194429899074283,0.139986421625363,1.43752564364972,0,0,0,0,0,0,82.5451160307159,81.4646108078931,72.8906114032106,0,0,0,0,0,2.99600110518405,2.68952813725088,51.6374269296219,54.6774050243347,52.5812403378455,47.7037143954352,52.7875812874356,45.444086508748,44.4722985524617,46.8801581171111,50.6533052597188,56.9485527859937,65.589989700416,123.841224178652,124.606170586482,112.51728804026,45.2276458382237,54.0252105630413,47.8258515541416,63.9344030477859,52.1080351724717,75.678175005072,0.075726193333184,0.0755715601067855,0,0,0,1.07940638327563,0,0,2.10666630197628,0,0,0.35333957451034,2.25349471642689,0,0,0,0,0,0,1.7127581957859,0.517875767294343,29.3915435348353,10.0621489524359,12.1786191324856,10.8389283710347,12.5099791658677,16.4624189989987,10.3046604890334,0,4.19338135067744,0.884610551949874,1.61766849947409,0.662524555381181,0.484875253135222,0,42.7459963636859,35.6059401582874,0.255457055208591,0,0,0,72.4986694719342,53.5275705297793,60.4397433662878,81.5236061701777,68.5317425645286,60.2585329222724,53.8640993384955,1.52759045775474,0.248813941220186,0,5.26104639716185,2.99277018814219,11.2652031172402,16.2055916824814,10.3986324306643,11.9744238506337,13.4519406299092,11.5253121208466,21.2136764005993,2.37124792226126,3.21480336285293,3.69497360744293,1.31517439456545,1.39023624612799,3.1342694986995,1.4404749548556,1.39323986772945,0,0,0,0.414251545071004,0.469052119962192,0.720248245844059,0.710234206755631,0.393528463494808,1.3884040159864,0.232533944750408,0.536546802799238,0.233530684734339,0.493679549740441,0.164167464079095,0.243206428637567,0.584799949701329,0.439100230582101,0,82.643949785702,89.8357266071153,0,0.264450566663544,2.55945900642281,5.10920678092965,4.38149368495117,0.80673409849337,2.2237804384487,1.90225626112559,0,1.97638745668813,2.5133520880027,1.1937388322469,1.36474860983384,0,0,0.199141273254367,1.13800740571849,3.31320686568214,0,0.814605311381257,0.581857461502877,0.771494018793504,0.126473074248515,0,0.156998727841375,0,0,0.667380422864376,0.589676985339609,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,2.27389694124582,1.30371981153621,1.18821560042632,0.469380496577004,0.670025029767263,0.476087281772027,0.585400943573396,1.7339865851681,1.10732344824387,1.2756381492599,0.983179888294428,0.518054945597687,0.433947175744535,0,0,0,0.551873492609465,45.4358169665451,40.6724552474945,0,0,5.67914794949262,1.56175497718655,11.2020166821055,0.716906393857656,2.00518806674155,1.98153571552183,4.04810701674894,8.76767573733936,6.32460444714438,37.5945940213514,0.567760340833074,0.890328018336276,1.30309567482861,0.494910368917606,0,0.971122544619926,0,0.188605079755898,0.885905678642318,0.614870295887855,1.29214146584111,0.363533729477506,0.712994756769443,0.632073515871632,0,0,13.2771446243977,10.443543453816,8.40831444587904,3.64372959553707,2.83744373827638,2.67553226403106,5.10101963866575,8.22055362609418,0,0,0.882113592219848,0.16488625294148,2.09903754704677,1.38719727334758,0.238744688006273,0.820704498725306,0.874442509889552,31.3368760397761,0,0,0.185194527369712,0,0,0,0,0,0,0.954670618015114,2.68885594543965,2.84647253977588,2.16010681643603,1.46361807210128,0.87345025498471,1.88810084938749,1.57041565878138,0.26175594198403,0.129614973291793,0,4.50954350947352,0.149516546043979,0.330916980914195,1.94451188344048,0.904118764344118,0.675824501963113,0.352071715937262,0.781226309063701,2.09718688851422,0.966336483304024,2.59227005632079,0,0.405450430580328,0.616265742988964,0.129920822977795,0.358053391334963,0,0,0,0.100966449948148,0.0762068066549998,0.100826185136841,0,0,0,0.226730383615211,0.443971906748129,0.0897138566094757,0.335769232728157,0.579568782096571,0.375364950902364,0.549454872801795,0.214368379079066,0,99.9610761432208,87.4617949363636,88.2259090696671,75.0998406841915,84.9502324515596,92.9134493789332,90.453015031062,89.6139194416199,92.4410514327777,92.6790958035758,5.70830411712972,14.3648954424371,10.7562171625105,12.398442570483,16.5594398476106,19.1197248788015,14.0015438515018,14.0103838922448,12.8367683836726,10.1078884705519,11.1530891951705,17.5422497489051,8.89594320963883,11.0763513660424,10.8553036326109,10.9547548995107,12.7472758539341,12.9249177710682,10.3021475200827,11.9231125308862,13.0290315906458,12.2458306249943,13.5908628269973,14.2439488299682,13.081203877731,13.1998788311015,12.9878860739669,12.6273461490165,12.2223702461276,13.4674145197857,12.3380418849141,12.2145558145699,12.6861623382604,12.0850736125053,10.0311437710194,29.4776481966776,8.18760629558929,10.3138105943183,6.88637995447836,2.64709702943419,2.08681052058379 | ||
|short_description=p1@Tub | |short_description=p1@Tub | ||
}} | }} |
Latest revision as of 17:05, 25 September 2015
Short description: | p1@Tub |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tub_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_NM_021885, uc009jdf.1_5end |
EntrezGene: | Tub |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.25e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.25e-16 | 23 |
neuron | 1.20e-14 | 33 |
neuronal stem cell | 1.20e-14 | 33 |
neuroblast | 1.20e-14 | 33 |
electrically signaling cell | 1.20e-14 | 33 |
ectodermal cell | 1.44e-10 | 44 |
neurectodermal cell | 1.44e-10 | 44 |
neural cell | 1.75e-10 | 43 |
electrically responsive cell | 2.49e-10 | 39 |
electrically active cell | 2.49e-10 | 39 |