FFCP PHASE1:Mm9::chr8:73397376..73397400,-: Difference between revisions
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{{FFCP|EntrezGene=234388|HGNC=|MCL_coexpression_id=1420|UniProt=Q9D8X2|association_with_transcript=0bp_to_ENSMUST00000007865,NM_026964,uc009mby.1_5end|description=CAGE_peak_1_at_Ccdc124_5end|id=chr8:73397376..73397400,-|ontology_enrichment_celltype=CL:0002319!6.47e-14!43;CL:0000548!1.22e-13!115;CL:0000004!1.22e-13!115;CL:0000255!1.22e-13!115;CL:0002371!3.94e-13!118;CL:0000221!6.67e-13!44;CL:0000133!6.67e-13!44;CL:0002321!1.15e-12!70;CL:0000220!1.15e-12!70;CL:0000117!2.84e-12!23;CL:0000337!2.84e-12!23;CL:0000144!2.73e-11!121;CL:0000012!2.73e-11!121;CL:0000055!3.84e-11!50;CL:0000540!3.14e-09!33;CL:0000047!3.14e-09!33;CL:0000031!3.14e-09!33;CL:0000404!3.14e-09!33|ontology_enrichment_celltype_v019_2=CL:0002319,6.47e-14,43;CL:0000221,6.67e-13,44;CL:0000133,6.67e-13,44;CL:0002321,1.15e-12,70;CL:0000117,2.84e-12,23;CL:0000337,2.84e-12,23;CL:0000540,3.14e-09,33;CL:0000047,3.14e-09,33;CL:0000031,3.14e-09,33;CL:0000404,3.14e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.80e-19!75;UBERON:0001016!1.80e-19!75;UBERON:0001017!5.18e-19!73;UBERON:0005743!5.18e-19!73;UBERON:0002020!2.51e-17!34;UBERON:0001049!2.87e-15!52;UBERON:0005068!2.87e-15!52;UBERON:0006241!2.87e-15!52;UBERON:0007135!2.87e-15!52;UBERON:0002791!8.63e-15!29;UBERON:0003528!8.63e-15!29;UBERON:0001893!8.63e-15!29;UBERON:0000955!3.65e-14!50;UBERON:0006238!3.65e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0004121!2.12e-11!102;UBERON:0000924!2.12e-11!102;UBERON:0006601!2.12e-11!102;UBERON:0003080!1.47e-10!40;UBERON:0002780!1.89e-10!39;UBERON:0001890!1.89e-10!39;UBERON:0006240!1.89e-10!39;UBERON:0002619!5.37e-10!17;UBERON:0000033!8.51e-10!63;UBERON:0002346!7.41e-09!71;UBERON:0003075!7.41e-09!71;UBERON:0007284!7.41e-09!71;UBERON:0003056!6.44e-08!49;UBERON:0002021!4.47e-07!10;UBERON:0000411!4.47e-07!10;UBERON:0001950!4.47e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-19,75;UBERON:0001017,5.18e-19,73;UBERON:0002020,2.51e-17,34;UBERON:0000073,2.67e-16,54;UBERON:0001049,2.87e-15,52;UBERON:0005068,2.87e-15,52;UBERON:0006241,2.87e-15,52;UBERON:0007135,2.87e-15,52;UBERON:0003528,8.63e-15,29;UBERON:0002791,8.63e-15,29;UBERON:0001893,8.63e-15,29;UBERON:0004121,2.66e-14,95;UBERON:0000924,2.66e-14,95;UBERON:0006601,2.66e-14,95;UBERON:0000955,8.43e-13,47;UBERON:0006238,8.43e-13,47;UBERON:0002616,1.83e-12,46;UBERON:0002346,5.43e-12,64;UBERON:0003075,5.43e-12,64;UBERON:0007284,5.43e-12,64;UBERON:0000956,2.03e-11,21;UBERON:0001869,2.03e-11,21;UBERON:0000203,2.03e-11,21;UBERON:0003080,1.47e-10,40;UBERON:0002780,1.89e-10,39;UBERON:0001890,1.89e-10,39;UBERON:0006240,1.89e-10,39;UBERON:0002619,5.37e-10,17;UBERON:0010371,1.65e-09,73;UBERON:0010314,1.78e-08,92;UBERON:0003056,6.44e-08,49;UBERON:0002021,4.47e-07,10;UBERON:0000411,4.47e-07,10;UBERON:0001950,4.47e-07,10|phase1_expression=13.6126520039075,38.7362702479691,28.2099528421512,43.5548464281835,50.0895729946347,32.7364580228185,42.2838879477901,17.0442786942881,23.65250532148,28.5558722112832,44.1742358021803,28.0000278073631,21.0576897815383,20.7186353733024,35.9758542760916,30.9787159106434,34.2785320282792,23.5019313191887,17.0021897671116,21.2194825899015,28.9147186513637,18.9645716793691,25.8587791247546,30.7185451763341,26.1526580416574,31.0085260622111,30.1533397311352,32.3206849028834,27.3633724017178,20.6664706403143,27.9380443425684,38.7368710810375,43.0545351309199,15.8481681015439,14.4425809875637,22.7741464141135,18.3752420636132,23.0192396905299,38.2854318816662,20.9409497589519,26.4704169613956,20.4913645487534,33.9857247121808,11.2048167998264,13.3817549209759,14.6837401729345,115.011527619162,93.750817243592,63.2696206275279,73.1056420519306,61.1740662502834,86.2515386189829,27.1807821813533,26.1130371124084,26.2153163331122,46.8212173585423,30.659078073447,25.7836046138721,81.9381666481371,65.5948814297321,76.0597684207415,82.3392212927991,48.0219189900015,69.7422280893084,72.1872444673891,83.1261734486937,58.1224214405705,80.3016258122049,48.1119801111336,51.4372625043741,55.9464397194676,76.5544638202194,89.4517590854035,70.4322095485986,64.1206201112001,64.3453150627015,64.9683697896393,59.885361561953,55.1447454389914,73.8563211289085,71.3603620098795,69.8023916546058,72.8667627393604,46.7092966326294,56.9937464207502,43.6050306501028,63.640141317199,56.1062331934155,47.1774184465737,32.1179130453838,34.4938741554997,45.6024654800135,38.078394687634,28.0645659651665,33.1385972898311,42.1145273871495,30.1955503283267,26.7575606447551,53.515916948191,59.3610485177372,17.3237406325317,55.1803852881567,155.431196221054,270.205347198266,55.8546885808932,62.5798867723494,64.2016045168775,19.2970756725211,15.7952109024775,17.6646145487141,27.9311376093479,15.5277393939192,18.6798552777407,19.4432206312883,18.34383831317,32.1706473803969,21.2587672251562,17.930320258069,40.6920853896942,25.3973954417432,36.2180090275045,36.3656439851417,13.0474232852686,36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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=234388 | |||
|HGNC= | |||
|MCL_coexpression_id=1420 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D8X2 | |||
|association_with_transcript=0bp_to_ENSMUST00000007865,NM_026964,uc009mby.1_5end | |||
|cluster_id=chr8:73397376..73397400,- | |||
|description=CAGE_peak_1_at_Ccdc124_5end | |||
|id=chr8:73397376..73397400,- | |||
|ontology_enrichment_celltype=CL:0002319!6.47e-14!43;CL:0000548!1.22e-13!115;CL:0000004!1.22e-13!115;CL:0000255!1.22e-13!115;CL:0002371!3.94e-13!118;CL:0000221!6.67e-13!44;CL:0000133!6.67e-13!44;CL:0002321!1.15e-12!70;CL:0000220!1.15e-12!70;CL:0000117!2.84e-12!23;CL:0000337!2.84e-12!23;CL:0000144!2.73e-11!121;CL:0000012!2.73e-11!121;CL:0000055!3.84e-11!50;CL:0000540!3.14e-09!33;CL:0000047!3.14e-09!33;CL:0000031!3.14e-09!33;CL:0000404!3.14e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.47e-14,43;CL:0000221,6.67e-13,44;CL:0000133,6.67e-13,44;CL:0002321,1.15e-12,70;CL:0000117,2.84e-12,23;CL:0000337,2.84e-12,23;CL:0000540,3.14e-09,33;CL:0000047,3.14e-09,33;CL:0000031,3.14e-09,33;CL:0000404,3.14e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.80e-19!75;UBERON:0001016!1.80e-19!75;UBERON:0001017!5.18e-19!73;UBERON:0005743!5.18e-19!73;UBERON:0002020!2.51e-17!34;UBERON:0001049!2.87e-15!52;UBERON:0005068!2.87e-15!52;UBERON:0006241!2.87e-15!52;UBERON:0007135!2.87e-15!52;UBERON:0002791!8.63e-15!29;UBERON:0003528!8.63e-15!29;UBERON:0001893!8.63e-15!29;UBERON:0000955!3.65e-14!50;UBERON:0006238!3.65e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0000956!2.03e-11!21;UBERON:0001869!2.03e-11!21;UBERON:0000203!2.03e-11!21;UBERON:0004121!2.12e-11!102;UBERON:0000924!2.12e-11!102;UBERON:0006601!2.12e-11!102;UBERON:0003080!1.47e-10!40;UBERON:0002780!1.89e-10!39;UBERON:0001890!1.89e-10!39;UBERON:0006240!1.89e-10!39;UBERON:0002619!5.37e-10!17;UBERON:0000033!8.51e-10!63;UBERON:0002346!7.41e-09!71;UBERON:0003075!7.41e-09!71;UBERON:0007284!7.41e-09!71;UBERON:0003056!6.44e-08!49;UBERON:0002021!4.47e-07!10;UBERON:0000411!4.47e-07!10;UBERON:0001950!4.47e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.80e-19,75;UBERON:0001017,5.18e-19,73;UBERON:0002020,2.51e-17,34;UBERON:0000073,2.67e-16,54;UBERON:0001049,2.87e-15,52;UBERON:0005068,2.87e-15,52;UBERON:0006241,2.87e-15,52;UBERON:0007135,2.87e-15,52;UBERON:0003528,8.63e-15,29;UBERON:0002791,8.63e-15,29;UBERON:0001893,8.63e-15,29;UBERON:0004121,2.66e-14,95;UBERON:0000924,2.66e-14,95;UBERON:0006601,2.66e-14,95;UBERON:0000955,8.43e-13,47;UBERON:0006238,8.43e-13,47;UBERON:0002616,1.83e-12,46;UBERON:0002346,5.43e-12,64;UBERON:0003075,5.43e-12,64;UBERON:0007284,5.43e-12,64;UBERON:0000956,2.03e-11,21;UBERON:0001869,2.03e-11,21;UBERON:0000203,2.03e-11,21;UBERON:0003080,1.47e-10,40;UBERON:0002780,1.89e-10,39;UBERON:0001890,1.89e-10,39;UBERON:0006240,1.89e-10,39;UBERON:0002619,5.37e-10,17;UBERON:0010371,1.65e-09,73;UBERON:0010314,1.78e-08,92;UBERON:0003056,6.44e-08,49;UBERON:0002021,4.47e-07,10;UBERON:0000411,4.47e-07,10;UBERON:0001950,4.47e-07,10 | |||
|phase1_expression=13.6126520039075,38.7362702479691,28.2099528421512,43.5548464281835,50.0895729946347,32.7364580228185,42.2838879477901,17.0442786942881,23.65250532148,28.5558722112832,44.1742358021803,28.0000278073631,21.0576897815383,20.7186353733024,35.9758542760916,30.9787159106434,34.2785320282792,23.5019313191887,17.0021897671116,21.2194825899015,28.9147186513637,18.9645716793691,25.8587791247546,30.7185451763341,26.1526580416574,31.0085260622111,30.1533397311352,32.3206849028834,27.3633724017178,20.6664706403143,27.9380443425684,38.7368710810375,43.0545351309199,15.8481681015439,14.4425809875637,22.7741464141135,18.3752420636132,23.0192396905299,38.2854318816662,20.9409497589519,26.4704169613956,20.4913645487534,33.9857247121808,11.2048167998264,13.3817549209759,14.6837401729345,115.011527619162,93.750817243592,63.2696206275279,73.1056420519306,61.1740662502834,86.2515386189829,27.1807821813533,26.1130371124084,26.2153163331122,46.8212173585423,30.659078073447,25.7836046138721,81.9381666481371,65.5948814297321,76.0597684207415,82.3392212927991,48.0219189900015,69.7422280893084,72.1872444673891,83.1261734486937,58.1224214405705,80.3016258122049,48.1119801111336,51.4372625043741,55.9464397194676,76.5544638202194,89.4517590854035,70.4322095485986,64.1206201112001,64.3453150627015,64.9683697896393,59.885361561953,55.1447454389914,73.8563211289085,71.3603620098795,69.8023916546058,72.8667627393604,46.7092966326294,56.9937464207502,43.6050306501028,63.640141317199,56.1062331934155,47.1774184465737,32.1179130453838,34.4938741554997,45.6024654800135,38.078394687634,28.0645659651665,33.1385972898311,42.1145273871495,30.1955503283267,26.7575606447551,53.515916948191,59.3610485177372,17.3237406325317,55.1803852881567,155.431196221054,270.205347198266,55.8546885808932,62.5798867723494,64.2016045168775,19.2970756725211,15.7952109024775,17.6646145487141,27.9311376093479,15.5277393939192,18.6798552777407,19.4432206312883,18.34383831317,32.1706473803969,21.2587672251562,17.930320258069,40.6920853896942,25.3973954417432,36.2180090275045,36.3656439851417,13.0474232852686,36.8903804234549,27.8564120061895,27.8448190177365,24.5621005237137,40.7933857075517,21.2207279212018,34.3020564237044,37.972550033946,43.0994427747125,49.8875798951833,57.5359778993244,45.7133698031032,48.5101376572595,21.5899451362671,23.7617313865278,34.3702951469798,29.2514179682199,26.2843294784661,31.9563925162527,35.1121153120431,23.5099515823715,17.9616357759506,20.2419678050063,29.4223415117549,19.6614561761652,33.8441748904562,26.8530633838303,27.2724242454121,28.7146409480123,13.9023624612799,20.89512999133,20.7839957772023,26.6705917536781,38.6217253022279,50.6975377015989,24.7222244474166,31.8973689704673,17.8239805585633,31.1507366327556,23.2009840873506,28.5308136033736,29.9278199001514,25.5787339225449,30.8514411609562,36.8978481880256,42.127321577851,31.027650710949,33.9678311997136,35.2341969695051,42.3731722511728,41.872402653236,51.7313273467753,37.7659927431974,27.4247589876552,28.0317600663357,24.3148605610167,22.759193842323,22.4229382700442,20.1683524623343,20.6811580775729,18.6421113590308,29.4208018157597,25.5283379822217,19.604146286421,13.9269530428806,21.2510854959841,28.7622210769351,23.342909386467,22.1046813312348,31.6745394591646,28.5621281524322,14.6520056375005,23.0126000465205,25.6017283061266,16.3416460344442,20.7415841767564,22.4367424928995,24.9627977267786,29.2451278494667,27.866546946192,31.2000347689096,31.4494392181125,30.5812472843401,28.8061372371674,23.6353616557368,18.3330613282622,25.892652370573,16.2135226775035,29.1035097979366,7.18841032636773,17.4906245404197,22.7787501373629,33.0878330110716,40.1850206289083,23.1572890254416,20.3228509183265,34.4874369422282,29.1707307831226,29.0264096675572,24.4077858220042,19.9332446355761,22.8521895250573,23.0257704472203,13.5566223931324,18.1601045511995,19.6129365448709,21.6299575424774,20.5495128420416,22.2759550215528,54.284862218138,39.7051149187658,34.9152633843516,24.2824336748165,47.2018734564108,51.8075654737538,25.9017213695147,55.7960749121664,31.2353137222094,32.0159770323244,25.4199609324703,26.7645053706858,27.8498342602993,34.8184132870264,27.9319384155677,30.1023533648651,30.8324466798288,46.9129121975838,17.8844507362418,27.4221029647573,19.5464351224291,20.6212653715669,38.4960901185892,20.6363540731734,29.9300321395104,23.3870298897314,28.9395855023157,23.6725063916824,21.7079766261306,19.6308213917853,26.3808060004694,23.0706833293146,32.6797686582496,40.2228618667929,17.3624198934432,26.6490419166339,32.8571056808196,30.4358589744861,20.5714671025037,17.658512942605,18.4294903074375,27.7063103694285,36.1394430418114,25.6316805745222,17.642271844397,39.0780419471308,15.0161916827192,27.7439454669517,25.7844263046775,28.0680938564055,20.9866202373493,49.1377050327851,23.238439788508,26.004745363366,19.0750363190803,22.9809517545723,21.871076435364,24.7080427063044,12.7483822495391,13.7152423277185,10.9177979305495,39.1414953386197,32.26627134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| |||
|short_description=p1@Ccdc124 | |||
}} |
Latest revision as of 18:03, 25 September 2015
Short description: | p1@Ccdc124 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ccdc124_5end |
Coexpression cluster: | MCL_coexpression_mm9:1420 |
Association with transcript: | 0bp_to_ENSMUST00000007865, NM_026964, uc009mby.1_5end |
EntrezGene: | Ccdc124 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.47e-14 | 43 |
ectodermal cell | 6.67e-13 | 44 |
neurectodermal cell | 6.67e-13 | 44 |
embryonic cell | 1.15e-12 | 70 |
CNS neuron (sensu Vertebrata) | 2.84e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.84e-12 | 23 |
neuron | 3.14e-09 | 33 |
neuronal stem cell | 3.14e-09 | 33 |
neuroblast | 3.14e-09 | 33 |
electrically signaling cell | 3.14e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.80e-19 | 75 |
central nervous system | 5.18e-19 | 73 |
gray matter | 2.51e-17 | 34 |
regional part of nervous system | 2.67e-16 | 54 |
neural tube | 2.87e-15 | 52 |
neural rod | 2.87e-15 | 52 |
future spinal cord | 2.87e-15 | 52 |
neural keel | 2.87e-15 | 52 |
brain grey matter | 8.63e-15 | 29 |
regional part of telencephalon | 8.63e-15 | 29 |
telencephalon | 8.63e-15 | 29 |
ectoderm-derived structure | 2.66e-14 | 95 |
ectoderm | 2.66e-14 | 95 |
presumptive ectoderm | 2.66e-14 | 95 |
brain | 8.43e-13 | 47 |
future brain | 8.43e-13 | 47 |
regional part of brain | 1.83e-12 | 46 |
neurectoderm | 5.43e-12 | 64 |
neural plate | 5.43e-12 | 64 |
presumptive neural plate | 5.43e-12 | 64 |
cerebral cortex | 2.03e-11 | 21 |
cerebral hemisphere | 2.03e-11 | 21 |
pallium | 2.03e-11 | 21 |
anterior neural tube | 1.47e-10 | 40 |
regional part of forebrain | 1.89e-10 | 39 |
forebrain | 1.89e-10 | 39 |
future forebrain | 1.89e-10 | 39 |
regional part of cerebral cortex | 5.37e-10 | 17 |
ecto-epithelium | 1.65e-09 | 73 |
structure with developmental contribution from neural crest | 1.78e-08 | 92 |
pre-chordal neural plate | 6.44e-08 | 49 |
occipital lobe | 4.47e-07 | 10 |
visual cortex | 4.47e-07 | 10 |
neocortex | 4.47e-07 | 10 |