FFCP PHASE1:Mm9::chr11:79153351..79153415,+: Difference between revisions
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{{FFCP|EntrezGene=18015|HGNC=|UniProt=E9QKP4,E9QK33,B1AQE7,Q04690|association_with_transcript=0bp_to_ENSMUST00000097941,ENSMUST00000108248,ENSMUST00000131800,NM_010897,uc007kkk.1,uc007kkl.1_5end|description=CAGE_peak_3_at_Nf1_5end|id=chr11:79153351..79153415,+|ontology_enrichment_celltype=CL:0000540!1.26e-10!33;CL:0000047!1.26e-10!33;CL:0000031!1.26e-10!33;CL:0000404!1.26e-10!33;CL:0000393!2.50e-08!39;CL:0000211!2.50e-08!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.10e-10,33;CL:0000047,1.10e-10,33;CL:0000031,1.10e-10,33;CL:0000404,1.10e-10,33;CL:0000393,2.44e-08,39;CL:0000211,2.44e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-16!73;UBERON:0005743!1.72e-16!73;UBERON:0000073!1.47e-15!75;UBERON:0001016!1.47e-15!75;UBERON:0002346!1.88e-13!71;UBERON:0003075!1.88e-13!71;UBERON:0007284!1.88e-13!71;UBERON:0004121!1.68e-12!102;UBERON:0000924!1.68e-12!102;UBERON:0006601!1.68e-12!102;UBERON:0001049!2.54e-11!52;UBERON:0005068!2.54e-11!52;UBERON:0006241!2.54e-11!52;UBERON:0007135!2.54e-11!52;UBERON:0000033!4.40e-11!63;UBERON:0003056!1.80e-10!49;UBERON:0000955!2.37e-10!50;UBERON:0006238!2.37e-10!50;UBERON:0002616!3.95e-10!49;UBERON:0002020!1.07e-09!34;UBERON:0000153!2.46e-09!94;UBERON:0003080!7.34e-09!40;UBERON:0002780!1.81e-08!39;UBERON:0001890!1.81e-08!39;UBERON:0006240!1.81e-08!39;UBERON:0007811!5.90e-08!86;UBERON:0002791!2.00e-07!29;UBERON:0003528!2.00e-07!29;UBERON:0001893!2.00e-07!29;UBERON:0002021!4.72e-07!10;UBERON:0000411!4.72e-07!10;UBERON:0001950!4.72e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-16,73;UBERON:0001016,1.13e-15,75;UBERON:0002346,1.82e-14,64;UBERON:0003075,1.82e-14,64;UBERON:0007284,1.82e-14,64;UBERON:0004121,9.34e-13,95;UBERON:0000924,9.34e-13,95;UBERON:0006601,9.34e-13,95;UBERON:0000073,1.42e-12,54;UBERON:0010314,5.57e-12,92;UBERON:0001049,1.86e-11,52;UBERON:0005068,1.86e-11,52;UBERON:0006241,1.86e-11,52;UBERON:0007135,1.86e-11,52;UBERON:0010371,2.95e-11,73;UBERON:0003056,1.27e-10,49;UBERON:0002020,7.40e-10,34;UBERON:0003080,5.31e-09,40;UBERON:0000955,5.78e-09,47;UBERON:0006238,5.78e-09,47;UBERON:0002616,9.51e-09,46;UBERON:0002780,1.32e-08,39;UBERON:0001890,1.32e-08,39;UBERON:0006240,1.32e-08,39;UBERON:0003528,1.46e-07,29;UBERON:0002791,1.46e-07,29;UBERON:0001893,1.46e-07,29;UBERON:0002021,4.35e-07,10;UBERON:0000411,4.35e-07,10;UBERON:0001950,4.35e-07,10|phase1_expression=4.64431656603902,0.697950815278722,0,0,0,1.00727563147134,0.233612640595526,1.54947988129892,13.6565060487117,16.6185813688615,2.56826952338257,1.59544317990673,0.342401459862411,0.174840804837995,0.666219523631325,0.404950534779652,1.39912375625629,1.57731082679119,1.50825876966313,1.69755860719212,5.78294373027274,0.893618560807968,0.783599367416806,0.799962113967033,0.45881856213434,0,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0.221730510655305,0.635030673459631,1.23012957516914,0,0.288851619751275,0,0.612508068787107,0.837063261473815,0.7813353445238,0,0.588231488031014,1.36609096991689,0,3.9028013572429,2.73717714292689,2.9367480345869,0,0.872100625521786,0,1.1665793944457,0.55994568650145,2.87505128729943,2.01339127269284,6.5282592781021,1.34437519656986,1.80081605225163,1.43266719969378,0.515672092277442,5.86717736492834,2.64495489636016,5.07065122804943,1.69422266034566,1.77858959222228,0.899899717281399,0,0,1.19840044207362,2.68952813725088,4.66603255388149,4.45519596494579,6.09942387919008,7.9982275633065,7.28866185140325,3.79721477566358,3.35459148563827,2.75765635983006,19.82085857989,8.81042632787795,10.4452442614246,5.27545150920775,5.03182039813253,4.68822033501084,5.30447698102624,6.75315132038016,6.57032465440283,12.9636577608414,13.9524247183121,6.71038004971082,1.8931548333296,1.13357340160178,4.63783181922684,0,4.0798280022465,0.539703191637817,0,0.448026887097336,1.12355536105401,0.681721290312231,1.03914401841148,0,7.04217098883402,6.41632387071589,12.7402619853323,0,1.08245520505607,1.01343946190039,0.505524445014783,2.16949371466214,1.8125651855302,1.7813056687779,5.20455980298408,4.87144765299426,2.99800146432876,2.41156224884196,5.17390311397101,0.879666139307728,1.48316980640624,1.87979163995885,0,1.94120219936891,1.10420759230197,1.45462575940567,0,4.68449275218475,6.70229461803056,1.02182822083437,2.15667224110656,0,1.65191295194984,7.63932260964596,9.15001205637253,4.14659361972453,10.6032835317289,11.2514801225345,5.40248915854856,9.08551073179443,4.78645010096487,1.7416975885413,1.0108910337347,1.89397670297827,8.06746746368763,6.43725892413724,3.60124259610698,6.48030716693575,7.00775941258677,6.66191345481219,6.1843138209421,4.65666067330228,6.25147179505242,9.64441008855878,7.9178005873777,5.91828477554452,7.22922847986555,3.48252166522167,4.11564272815887,5.9710280045548,2.80885274925294,0.51469581422943,1.98914449576915,6.62802472113606,8.20841209933837,4.8616756594474,5.44512891845984,3.93528463494808,3.5481435964097,3.0229412817553,2.14618721119695,3.50296027101508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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18015 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=E9QKP4,E9QK33,B1AQE7,Q04690 | |||
|association_with_transcript=0bp_to_ENSMUST00000097941,ENSMUST00000108248,ENSMUST00000131800,NM_010897,uc007kkk.1,uc007kkl.1_5end | |||
|cluster_id=chr11:79153351..79153415,+ | |||
|description=CAGE_peak_3_at_Nf1_5end | |||
|id=chr11:79153351..79153415,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.26e-10!33;CL:0000047!1.26e-10!33;CL:0000031!1.26e-10!33;CL:0000404!1.26e-10!33;CL:0000393!2.50e-08!39;CL:0000211!2.50e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.10e-10,33;CL:0000047,1.10e-10,33;CL:0000031,1.10e-10,33;CL:0000404,1.10e-10,33;CL:0000393,2.44e-08,39;CL:0000211,2.44e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.72e-16!73;UBERON:0005743!1.72e-16!73;UBERON:0000073!1.47e-15!75;UBERON:0001016!1.47e-15!75;UBERON:0002346!1.88e-13!71;UBERON:0003075!1.88e-13!71;UBERON:0007284!1.88e-13!71;UBERON:0004121!1.68e-12!102;UBERON:0000924!1.68e-12!102;UBERON:0006601!1.68e-12!102;UBERON:0001049!2.54e-11!52;UBERON:0005068!2.54e-11!52;UBERON:0006241!2.54e-11!52;UBERON:0007135!2.54e-11!52;UBERON:0000033!4.40e-11!63;UBERON:0003056!1.80e-10!49;UBERON:0000955!2.37e-10!50;UBERON:0006238!2.37e-10!50;UBERON:0002616!3.95e-10!49;UBERON:0002020!1.07e-09!34;UBERON:0000153!2.46e-09!94;UBERON:0003080!7.34e-09!40;UBERON:0002780!1.81e-08!39;UBERON:0001890!1.81e-08!39;UBERON:0006240!1.81e-08!39;UBERON:0007811!5.90e-08!86;UBERON:0002791!2.00e-07!29;UBERON:0003528!2.00e-07!29;UBERON:0001893!2.00e-07!29;UBERON:0002021!4.72e-07!10;UBERON:0000411!4.72e-07!10;UBERON:0001950!4.72e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.30e-16,73;UBERON:0001016,1.13e-15,75;UBERON:0002346,1.82e-14,64;UBERON:0003075,1.82e-14,64;UBERON:0007284,1.82e-14,64;UBERON:0004121,9.34e-13,95;UBERON:0000924,9.34e-13,95;UBERON:0006601,9.34e-13,95;UBERON:0000073,1.42e-12,54;UBERON:0010314,5.57e-12,92;UBERON:0001049,1.86e-11,52;UBERON:0005068,1.86e-11,52;UBERON:0006241,1.86e-11,52;UBERON:0007135,1.86e-11,52;UBERON:0010371,2.95e-11,73;UBERON:0003056,1.27e-10,49;UBERON:0002020,7.40e-10,34;UBERON:0003080,5.31e-09,40;UBERON:0000955,5.78e-09,47;UBERON:0006238,5.78e-09,47;UBERON:0002616,9.51e-09,46;UBERON:0002780,1.32e-08,39;UBERON:0001890,1.32e-08,39;UBERON:0006240,1.32e-08,39;UBERON:0003528,1.46e-07,29;UBERON:0002791,1.46e-07,29;UBERON:0001893,1.46e-07,29;UBERON:0002021,4.35e-07,10;UBERON:0000411,4.35e-07,10;UBERON:0001950,4.35e-07,10 | |||
|phase1_expression=4.64431656603902,0.697950815278722,0,0,0,1.00727563147134,0.233612640595526,1.54947988129892,13.6565060487117,16.6185813688615,2.56826952338257,1.59544317990673,0.342401459862411,0.174840804837995,0.666219523631325,0.404950534779652,1.39912375625629,1.57731082679119,1.50825876966313,1.69755860719212,5.78294373027274,0.893618560807968,0.783599367416806,0.799962113967033,0.45881856213434,0,0.430761996159075,0.430942465371778,0.380046838912748,0.252030129759931,0.221730510655305,0.635030673459631,1.23012957516914,0,0.288851619751275,0,0.612508068787107,0.837063261473815,0.7813353445238,0,0.588231488031014,1.36609096991689,0,3.9028013572429,2.73717714292689,2.9367480345869,0,0.872100625521786,0,1.1665793944457,0.55994568650145,2.87505128729943,2.01339127269284,6.5282592781021,1.34437519656986,1.80081605225163,1.43266719969378,0.515672092277442,5.86717736492834,2.64495489636016,5.07065122804943,1.69422266034566,1.77858959222228,0.899899717281399,0,0,1.19840044207362,2.68952813725088,4.66603255388149,4.45519596494579,6.09942387919008,7.9982275633065,7.28866185140325,3.79721477566358,3.35459148563827,2.75765635983006,19.82085857989,8.81042632787795,10.4452442614246,5.27545150920775,5.03182039813253,4.68822033501084,5.30447698102624,6.75315132038016,6.57032465440283,12.9636577608414,13.9524247183121,6.71038004971082,1.8931548333296,1.13357340160178,4.63783181922684,0,4.0798280022465,0.539703191637817,0,0.448026887097336,1.12355536105401,0.681721290312231,1.03914401841148,0,7.04217098883402,6.41632387071589,12.7402619853323,0,1.08245520505607,1.01343946190039,0.505524445014783,2.16949371466214,1.8125651855302,1.7813056687779,5.20455980298408,4.87144765299426,2.99800146432876,2.41156224884196,5.17390311397101,0.879666139307728,1.48316980640624,1.87979163995885,0,1.94120219936891,1.10420759230197,1.45462575940567,0,4.68449275218475,6.70229461803056,1.02182822083437,2.15667224110656,0,1.65191295194984,7.63932260964596,9.15001205637253,4.14659361972453,10.6032835317289,11.2514801225345,5.40248915854856,9.08551073179443,4.78645010096487,1.7416975885413,1.0108910337347,1.89397670297827,8.06746746368763,6.43725892413724,3.60124259610698,6.48030716693575,7.00775941258677,6.66191345481219,6.1843138209421,4.65666067330228,6.25147179505242,9.64441008855878,7.9178005873777,5.91828477554452,7.22922847986555,3.48252166522167,4.11564272815887,5.9710280045548,2.80885274925294,0.51469581422943,1.98914449576915,6.62802472113606,8.20841209933837,4.8616756594474,5.44512891845984,3.93528463494808,3.5481435964097,3.0229412817553,2.14618721119695,3.50296027101508,3.62031669809657,5.58169377868924,3.81023404865522,1.46199987425332,1.75640092232841,2.01309628140558,7.14985825118033,7.82075054082562,0,0,5.97207101498655,10.4506502337197,4.25262622362908,3.63030344322017,4.44756087689741,1.90225626112559,0.474529061544512,2.14108641141214,2.26201687920243,2.78539060857611,1.9496408711912,2.69645822596266,0.648414149624083,1.1948476395262,1.70701110857774,5.82667414309617,7.88954149711563,5.90588850751411,5.23671715352589,7.29412526859313,4.7427402843193,1.77132177575523,1.41298855057237,0.493588655687202,0.296452627087149,2.00214126859313,1.76903095601883,1.12431056192427,1.62288097110802,0.482354319504834,1.52775511068852,0.863088412352432,2.91843408195064,0,4.31304619582064,2.23284568601102,1.87222603868736,1.01031551178845,0.358794827043824,1.4473305640901,4.24932337383191,6.44270800019648,7.82231886921724,7.63852885988347,7.04070744865506,6.53274404023081,3.57065461329021,6.24427673144956,8.03939234941574,7.0868700687608,8.92946704481928,4.09658286789345,3.45369963731791,5.49666422609744,1.50791283939272,1.08781136763742,0.983528546038072,1.93155722413313,7.06422595946285,8.20481806145422,1.80328439914343,0.504941854408746,8.20321370482267,6.24701990874622,9.04778270477756,8.36390792833932,11.1399337041197,12.4553673547086,11.334699646897,12.8592577480977,14.6256477840214,5.78378369559253,3.12268187458191,3.20518086601059,6.67836533349662,1.64970122972535,0,4.12727081463468,2.72091201268276,1.88605079755898,1.77181135728464,3.07435147943927,3.6179961043551,4.36240475373007,1.78248689192361,2.52829406348653,1.05418608574999,1.03135543248187,2.38307724027652,7.56256594931503,4.2688365648309,3.00071849044229,5.49754724291048,5.17269571046005,5.10101963866575,3.65357938937519,1.40803024838226,0.63549621259146,1.10264199027481,0.49465875882444,1.77610869365496,1.86970067277283,1.07435109602823,0.984845398470368,2.33184669303881,9.27126510052548,1.19609616558497,2.47664241555867,2.03713980106683,1.69531611304222,0.546776910884101,0.686334519619568,4.75939603982795,4.3384950220334,5.2515990045681,0,7.43389584915668,3.86306987541013,4.32021363287205,2.92723614420256,3.05707589244649,3.37160865962052,2.39695021603474,1.57053565190418,0.648074866458964,0,16.3470952218415,4.9340460194513,3.30916980914195,4.4723773319131,4.64975364519832,7.60302564708502,6.33729088687071,4.1665403150064,6.71099804324549,12.8039584037783,11.52120025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| |||
|short_description=p3@Nf1 | |||
}} |
Latest revision as of 18:44, 25 September 2015
Short description: | p3@Nf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nf1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000097941, ENSMUST00000108248, ENSMUST00000131800, NM_010897, uc007kkk.1, uc007kkl.1_5end |
EntrezGene: | Nf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.10e-10 | 33 |
neuronal stem cell | 1.10e-10 | 33 |
neuroblast | 1.10e-10 | 33 |
electrically signaling cell | 1.10e-10 | 33 |
electrically responsive cell | 2.44e-08 | 39 |
electrically active cell | 2.44e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.30e-16 | 73 |
nervous system | 1.13e-15 | 75 |
neurectoderm | 1.82e-14 | 64 |
neural plate | 1.82e-14 | 64 |
presumptive neural plate | 1.82e-14 | 64 |
ectoderm-derived structure | 9.34e-13 | 95 |
ectoderm | 9.34e-13 | 95 |
presumptive ectoderm | 9.34e-13 | 95 |
regional part of nervous system | 1.42e-12 | 54 |
structure with developmental contribution from neural crest | 5.57e-12 | 92 |
neural tube | 1.86e-11 | 52 |
neural rod | 1.86e-11 | 52 |
future spinal cord | 1.86e-11 | 52 |
neural keel | 1.86e-11 | 52 |
ecto-epithelium | 2.95e-11 | 73 |
pre-chordal neural plate | 1.27e-10 | 49 |
gray matter | 7.40e-10 | 34 |
anterior neural tube | 5.31e-09 | 40 |
brain | 5.78e-09 | 47 |
future brain | 5.78e-09 | 47 |
regional part of brain | 9.51e-09 | 46 |
regional part of forebrain | 1.32e-08 | 39 |
forebrain | 1.32e-08 | 39 |
future forebrain | 1.32e-08 | 39 |
brain grey matter | 1.46e-07 | 29 |
regional part of telencephalon | 1.46e-07 | 29 |
telencephalon | 1.46e-07 | 29 |
occipital lobe | 4.35e-07 | 10 |
visual cortex | 4.35e-07 | 10 |
neocortex | 4.35e-07 | 10 |