FFCP PHASE1:Mm9::chr10:128346022..128346034,+: Difference between revisions
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|id=chr10:128346022..128346034,+
|short_description=p5@Cd63,p5@LOC100505035
|description=CAGE_peak_5_at_Cd63_5end,CAGE_peak_5_at_LOC100505035_5end
|association_with...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=100505035,12512 | |EntrezGene=100505035,12512 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1881 | |||
|TSSclassifier=NA | |||
|UniProt=P41731,Q549D0 | |UniProt=P41731,Q549D0 | ||
|association_with_transcript=47bp_to_ENSMUST00000105229,NM_001042580,uc007hou.1_5end | |||
|cluster_id=chr10:128346022..128346034,+ | |||
|description=CAGE_peak_5_at_Cd63_5end,CAGE_peak_5_at_LOC100505035_5end | |||
|id=chr10:128346022..128346034,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.69e-10!9;CL:0002251!3.69e-10!9;CL:0000075!3.23e-07!7;CL:0000239!5.65e-07!6;CL:0000677!5.65e-07!6;CL:0000212!5.65e-07!6;CL:0000584!5.65e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.57e-15,9;CL:0002251,3.57e-15,9;CL:0000239,3.84e-10,6;CL:0000677,3.84e-10,6;CL:0000584,3.84e-10,6;CL:0000075,1.43e-08,7;CL:0002076,2.59e-08,15;CL:0000066,3.93e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.54e-26!59;UBERON:0000160!1.06e-24!43;UBERON:0000344!7.04e-17!15;UBERON:0001242!9.71e-15!13;UBERON:0000060!9.71e-15!13;UBERON:0001262!9.71e-15!13;UBERON:0004786!9.71e-15!13;UBERON:0004923!5.62e-11!24;UBERON:0003350!3.69e-10!9;UBERON:0004808!3.69e-10!9;UBERON:0001277!3.69e-10!9;UBERON:0000485!3.66e-09!11;UBERON:0004119!1.77e-07!130;UBERON:0000925!1.77e-07!130;UBERON:0006595!1.77e-07!130;UBERON:0001007!2.49e-07!128;UBERON:0001555!2.49e-07!128;UBERON:0007026!2.49e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.18e-36,31;UBERON:0005409,1.78e-33,47;UBERON:0000344,7.84e-26,15;UBERON:0001242,1.96e-22,13;UBERON:0001262,1.96e-22,13;UBERON:0004786,1.96e-22,13;UBERON:0004923,1.50e-16,24;UBERON:0003350,3.57e-15,9;UBERON:0004808,3.57e-15,9;UBERON:0001277,3.57e-15,9;UBERON:0000485,4.77e-12,11;UBERON:0001007,3.24e-10,116;UBERON:0001555,3.24e-10,116;UBERON:0007026,3.24e-10,116;UBERON:0004119,6.81e-10,118;UBERON:0000925,6.81e-10,118;UBERON:0006595,6.81e-10,118;UBERON:0004921,1.01e-08,114;UBERON:0002108,1.01e-08,4;UBERON:0000331,4.98e-07,3;UBERON:0002116,4.98e-07,3;UBERON:0001204,4.98e-07,3;UBERON:0001168,4.98e-07,3 | |||
|phase1_expression=0,3.14077866875425,4.09499315450582,3.32710632437513,4.00716583957078,3.02182689441402,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,5.43974237497583,4.81759490241057,10.3361753540704,3.87685796543167,5.17130958446134,13.4916627814025,7.56090389279792,9.3126814475228,0,0,0,6.93243887403059,5.65197794218874,4.49172583777212,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,1.26399978118577,0,0,0,0.14084341977668,0,0,0,0,0,0,2.51204535381932,0,0,0,0,0,0,0,0,2.22475470960936,0,0,0.161766849947409,0,0,0,0,0,4.59822699375465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.93879444265976,3.43785736662608,0,0,0.644337306610467,1.81515172161008,2.66853652613844,3.04361001780095,2.84717436926707,2.63518327558417,3.2673577144035,1.59165177632921,2.9244613067868,2.69645822596266,3.6743468478698,4.38110801159608,0.569003702859245,0.571242563048644,1.1270773567308,1.01825663922657,1.74557238450863,1.26244475802573,5.12215950706484,9.44704947069454,11.4609071324204,9.99517027766584,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0.188605079755898,1.77181135728464,0.922305443831782,0.775284879504663,0,1.06949213515416,0,0,2.06271086496374,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,5.53813589596716,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0.86404272657441,1.46361807210128,1.9652630737156,2.42755823492677,1.1571483801547,1.83229159388821,4.40690909192096,0,0.56369293868419,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0.320919209591815,0.758091635291392,0.25347929989024,0.188626341386076,0.280924522409647,0.384150914429216,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,0.354951612318675,0.476872379894642,0.145346416632329,0.282328141245992,0.25384382367503,0,0.526139422875686,0.271608227691724,0,0.118635018124174,0,0,0.154936841185966,0,0,0.233931608445408,0.214871054048298,0,0,0 | |phase1_expression=0,3.14077866875425,4.09499315450582,3.32710632437513,4.00716583957078,3.02182689441402,2.33612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27564935226605,0,0,5.43974237497583,4.81759490241057,10.3361753540704,3.87685796543167,5.17130958446134,13.4916627814025,7.56090389279792,9.3126814475228,0,0,0,6.93243887403059,5.65197794218874,4.49172583777212,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,0,0,0,0,0,0,1.26399978118577,0,0,0,0.14084341977668,0,0,0,0,0,0,2.51204535381932,0,0,0,0,0,0,0,0,2.22475470960936,0,0,0.161766849947409,0,0,0,0,0,4.59822699375465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.93879444265976,3.43785736662608,0,0,0.644337306610467,1.81515172161008,2.66853652613844,3.04361001780095,2.84717436926707,2.63518327558417,3.2673577144035,1.59165177632921,2.9244613067868,2.69645822596266,3.6743468478698,4.38110801159608,0.569003702859245,0.571242563048644,1.1270773567308,1.01825663922657,1.74557238450863,1.26244475802573,5.12215950706484,9.44704947069454,11.4609071324204,9.99517027766584,0,0,0,0,0,0,0,0,0,0.274561413188081,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0.188605079755898,1.77181135728464,0.922305443831782,0.775284879504663,0,1.06949213515416,0,0,2.06271086496374,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,5.53813589596716,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0.203319467126849,0.86404272657441,1.46361807210128,1.9652630737156,2.42755823492677,1.1571483801547,1.83229159388821,4.40690909192096,0,0.56369293868419,0.149516546043979,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0.320919209591815,0.758091635291392,0.25347929989024,0.188626341386076,0.280924522409647,0.384150914429216,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,0.354951612318675,0.476872379894642,0.145346416632329,0.282328141245992,0.25384382367503,0,0.526139422875686,0.271608227691724,0,0.118635018124174,0,0,0.154936841185966,0,0,0.233931608445408,0.214871054048298,0,0,0 | ||
|short_description=p5@Cd63,p5@LOC100505035 | |||
}} | }} |
Latest revision as of 19:29, 25 September 2015
Short description: | p5@Cd63, p5@LOC100505035 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Cd63_5end, CAGE_peak_5_at_LOC100505035_5end |
Coexpression cluster: | MCL_coexpression_mm9:1881 |
Association with transcript: | 47bp_to_ENSMUST00000105229, NM_001042580, uc007hou.1_5end |
EntrezGene: | 100505035,12512 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.57e-15 | 9 |
epithelial cell of alimentary canal | 3.57e-15 | 9 |
brush border epithelial cell | 3.84e-10 | 6 |
gut absorptive cell | 3.84e-10 | 6 |
enterocyte | 3.84e-10 | 6 |
columnar/cuboidal epithelial cell | 1.43e-08 | 7 |
endo-epithelial cell | 2.59e-08 | 15 |
epithelial cell | 3.93e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.18e-36 | 31 |
gastrointestinal system | 1.78e-33 | 47 |
mucosa | 7.84e-26 | 15 |
intestinal mucosa | 1.96e-22 | 13 |
wall of intestine | 1.96e-22 | 13 |
gastrointestinal system mucosa | 1.96e-22 | 13 |
organ component layer | 1.50e-16 | 24 |
epithelium of mucosa | 3.57e-15 | 9 |
gastrointestinal system epithelium | 3.57e-15 | 9 |
intestinal epithelium | 3.57e-15 | 9 |
simple columnar epithelium | 4.77e-12 | 11 |
digestive system | 3.24e-10 | 116 |
digestive tract | 3.24e-10 | 116 |
primitive gut | 3.24e-10 | 116 |
endoderm-derived structure | 6.81e-10 | 118 |
endoderm | 6.81e-10 | 118 |
presumptive endoderm | 6.81e-10 | 118 |
subdivision of digestive tract | 1.01e-08 | 114 |
small intestine | 1.01e-08 | 4 |
ileal mucosa | 4.98e-07 | 3 |
ileum | 4.98e-07 | 3 |
mucosa of small intestine | 4.98e-07 | 3 |
wall of small intestine | 4.98e-07 | 3 |