FFCP PHASE1:Mm9::chr2:136539180..136539228,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20614 | |EntrezGene=20614 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=P60879 | |UniProt=P60879 | ||
|association_with_transcript=0bp_to_ENSMUST00000028727,ENSMUST00000110098,ENSMUST00000125486,NM_011428,uc008mop.1_5end | |association_with_transcript=0bp_to_ENSMUST00000028727,ENSMUST00000110098,ENSMUST00000125486,NM_011428,uc008mop.1_5end | ||
|cluster_id=chr2:136539180..136539228,+ | |||
|description=CAGE_peak_1_at_Snap25_5end | |description=CAGE_peak_1_at_Snap25_5end | ||
|id=chr2:136539180..136539228,+ | |id=chr2:136539180..136539228,+ | ||
|ontology_enrichment_celltype=CL:0000540!9.37e-14!33;CL:0000047!9.37e-14!33;CL:0000031!9.37e-14!33;CL:0000404!9.37e-14!33;CL:0000117!3.10e-12!23;CL:0000337!3.10e-12!23;CL:0000221!4.53e-09!44;CL:0000133!4.53e-09!44;CL:0002319!6.26e-09!43;CL:0000393!8.07e-09!39;CL:0000211!8.07e-09!39 | |ontology_enrichment_celltype=CL:0000540!9.37e-14!33;CL:0000047!9.37e-14!33;CL:0000031!9.37e-14!33;CL:0000404!9.37e-14!33;CL:0000117!3.10e-12!23;CL:0000337!3.10e-12!23;CL:0000221!4.53e-09!44;CL:0000133!4.53e-09!44;CL:0002319!6.26e-09!43;CL:0000393!8.07e-09!39;CL:0000211!8.07e-09!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.28e-15,33;CL:0000047,3.28e-15,33;CL:0000031,3.28e-15,33;CL:0000404,3.28e-15,33;CL:0000117,1.65e-13,23;CL:0000337,1.65e-13,23;CL:0000393,1.24e-10,39;CL:0000211,1.24e-10,39;CL:0000221,2.68e-10,44;CL:0000133,2.68e-10,44;CL:0002319,3.84e-10,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.67e-29,64;UBERON:0003075,2.67e-29,64;UBERON:0007284,2.67e-29,64;UBERON:0001016,6.31e-29,75;UBERON:0001017,1.14e-28,73;UBERON:0004121,1.73e-26,95;UBERON:0000924,1.73e-26,95;UBERON:0006601,1.73e-26,95;UBERON:0000073,1.27e-25,54;UBERON:0001049,4.38e-24,52;UBERON:0005068,4.38e-24,52;UBERON:0006241,4.38e-24,52;UBERON:0007135,4.38e-24,52;UBERON:0010371,8.21e-24,73;UBERON:0003056,5.83e-23,49;UBERON:0000955,9.01e-21,47;UBERON:0006238,9.01e-21,47;UBERON:0002616,4.69e-20,46;UBERON:0003080,7.88e-19,40;UBERON:0010314,9.33e-19,92;UBERON:0002020,4.80e-18,34;UBERON:0002780,4.82e-18,39;UBERON:0001890,4.82e-18,39;UBERON:0006240,4.82e-18,39;UBERON:0003528,4.99e-15,29;UBERON:0002791,4.99e-15,29;UBERON:0001893,4.99e-15,29;UBERON:0000956,2.14e-10,21;UBERON:0001869,2.14e-10,21;UBERON:0000203,2.14e-10,21;UBERON:0002619,2.89e-08,17;UBERON:0002021,2.99e-08,10;UBERON:0000411,2.99e-08,10;UBERON:0001950,2.99e-08,10 | |||
|phase1_expression=10.089377367602,0,0,0.30246421130683,0,2.35030980676646,1.63528848416868,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,310.918268792311,0,0,1.27993938234725,0.45881856213434,0,0.430761996159075,0,1.33016393619462,0.252030129759931,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,36.4169629547276,39.1453324661304,33.5930643858275,0,0,0.449949858640699,0.988866362566974,0,1.19840044207362,0,37.5356396556689,30.3763361246304,35.3345935070322,204.526104833123,202.094714970726,25.6005770359254,18.6898668485561,28.4957823849107,1128.68778024373,1083.5547509909,1281.38570042358,29.6744147392936,32.1121629044458,35.9430225684164,1319.69803627953,581.333776162725,820.679388809247,233.640468280618,242.743715762471,85.557345633813,5.37655972665607,11.3357340160178,0,0,0,0,0,0,67.4133216632409,0,0,0.35333957451034,10.9857867425811,0,0,0,0.216491041011214,0,1.01104889002957,46.5870229253765,0,28.5008907004464,15.0932234286538,22.2259799167863,15.2206228188999,22.4576734423408,26.4574591055336,10.1789938977037,0,1.87979163995885,0,0.161766849947409,0,0,3.72783522436244,1047.86247250433,892.242971025319,3.32094171771169,0,0,0,1267.52839064361,821.213582059435,73.8847590423643,1491.06501860935,1198.79406396459,1121.01650039883,813.639934284805,0.509196819251581,0,0,108.798439493307,2.73252930221678,16.3230494147766,30.0703756774933,46.2663790755645,83.8209669544359,94.8041530107888,104.758528057777,249.64875276315,0,0.756424320671277,0.175951124163949,0.219195732427575,0,0,0,0.995171334092466,0,0,0,0.621377317606506,0.469052119962192,0,0.23674473558521,0.393528463494808,0.308534225774757,0,0,0.350296027101508,0.658239399653922,0.656669856316381,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,1209.79807408942,93.7461018775281,2.97376904685418,2.90895623329899,1.49301775374664,3.71578674976702,4.12375876230699,6.6555563125703,5.11469500843202,5.1360919050391,4.2707615539006,4.44687177754829,6.03204501120647,5.57078121715222,4.874102177978,4.49409704327111,4.10662294761919,4.97853183135918,0.948339504765408,5.9409226557059,0,1.62921062276251,0.969762435838129,1.1221731182451,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,1.70542270593436,0.488894929326078,0.169745085775188,0.704070744865506,0.502518772325447,0.238043640886014,0.390267295715598,0.315270288212382,0,0,0.655453258862952,1.03610989119537,0.433947175744535,0,0,0,0,2172.08893194484,1657.60767178694,0.163934945376675,0,12.6203287766503,15.2271110275689,22.1886099664783,2.15071918157297,6.68396022247182,9.6246020468203,23.4790206971439,30.6868650806877,36.7617633490267,932.795781572506,0,0.534196811001766,0.977321756121456,0,6.63725691699814,3.15614827001476,2.41858845571801,2.45186603682668,3.54362271456927,7.07100840271033,7.75284879504663,9.45187696641514,7.12994756769443,4.74055136903724,2.10837217149998,1.03135543248187,193.710135673905,3.96134406868882,2.32845630808958,5.14408884075822,25.7143338781297,22.4744710178609,32.0870590174136,18.5723618959906,0.23467170806371,0,24.6991805821557,0,0.161464426695906,0.0603129249281559,0,0.328281799490123,4.95517422270746,2467.82534445787,0,0.206386867963223,0,0,0,0,0,0.139951452323658,0,12.4107180341965,1.10717597753397,5.08298667817122,4.86024033698106,3.97267762427491,7.42432716737004,6.20375993370175,8.76126630688561,3.14107130380836,5.18459893167171,0,0,0.149516546043979,0,0.194451188344048,0,0,0.234714477291508,0,0,0,0,0,0.608175645870493,0.308132871494482,0.129920822977795,0.179026695667481,0,0.120195449519969,0.295379054349154,0.201932899896295,0.0762068066549998,0.100826185136841,0,0,0,0.680191150845634,0,0,0.167884616364078,12.5573236120924,0,0,2.14368379079066,0,577.741134997259,593.359229857751,559.71891663029,680.710455263347,1015.97737681986,1149.70951182712,988.907962839595,1127.15397167022,1259.2827545671,1161.33637925933,8.61434984948666,7.18244772121856,8.70741389346084,10.2104821168684,15.9306003597267,21.3258469802016,19.7799587743438,22.4578212390395,19.5760717851007,18.9522908822848,21.7992197905606,24.5214243801899,22.8485278226513,22.6649039513237,22.8018811753785,28.5776214769844,21.670368951688,24.6923802193542,20.192209139362,23.9934239819068,23.3151091622082,21.2970967391205,21.6976932852062,21.22057682832,22.77447006051,18.5305991282772,20.8537889074961,16.0472523977084,21.592854101492,20.7622640513363,16.4902675192602,20.5874368164928,20.0523211153148,20.9164735601054,13.5034627686799,20.9840885467875,11.462648813825,16.545071161719,13.1988949127502,11.0295709559758,18.5494268496337 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|phase1_expression=10.089377367602,0,0,0.30246421130683,0,2.35030980676646,1.63528848416868,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,310.918268792311,0,0,1.27993938234725,0.45881856213434,0,0.430761996159075,0,1.33016393619462,0.252030129759931,0.221730510655305,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0,36.4169629547276,39.1453324661304,33.5930643858275,0,0,0.449949858640699,0.988866362566974,0,1.19840044207362,0,37.5356396556689,30.3763361246304,35.3345935070322,204.526104833123,202.094714970726,25.6005770359254,18.6898668485561,28.4957823849107,1128.68778024373,1083.5547509909,1281.38570042358,29.6744147392936,32.1121629044458,35.9430225684164,1319.69803627953,581.333776162725,820.679388809247,233.640468280618,242.743715762471,85.557345633813,5.37655972665607,11.3357340160178,0,0,0,0,0,0,67.4133216632409,0,0,0.35333957451034,10.9857867425811,0,0,0,0.216491041011214,0,1.01104889002957,46.5870229253765,0,28.5008907004464,15.0932234286538,22.2259799167863,15.2206228188999,22.4576734423408,26.4574591055336,10.1789938977037,0,1.87979163995885,0,0.161766849947409,0,0,3.72783522436244,1047.86247250433,892.242971025319,3.32094171771169,0,0,0,1267.52839064361,821.213582059435,73.8847590423643,1491.06501860935,1198.79406396459,1121.01650039883,813.639934284805,0.509196819251581,0,0,108.798439493307,2.73252930221678,16.3230494147766,30.0703756774933,46.2663790755645,83.8209669544359,94.8041530107888,104.758528057777,249.64875276315,0,0.756424320671277,0.175951124163949,0.219195732427575,0,0,0,0.995171334092466,0,0,0,0.621377317606506,0.469052119962192,0,0.23674473558521,0.393528463494808,0.308534225774757,0,0,0.350296027101508,0.658239399653922,0.656669856316381,0.243206428637567,0.146199987425332,0.219550115291051,0.134206418760372,1209.79807408942,93.7461018775281,2.97376904685418,2.90895623329899,1.49301775374664,3.71578674976702,4.12375876230699,6.6555563125703,5.11469500843202,5.1360919050391,4.2707615539006,4.44687177754829,6.03204501120647,5.57078121715222,4.874102177978,4.49409704327111,4.10662294761919,4.97853183135918,0.948339504765408,5.9409226557059,0,1.62921062276251,0.969762435838129,1.1221731182451,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0.202860121388503,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.369506380333209,1.70542270593436,0.488894929326078,0.169745085775188,0.704070744865506,0.502518772325447,0.238043640886014,0.390267295715598,0.315270288212382,0,0,0.655453258862952,1.03610989119537,0.433947175744535,0,0,0,0,2172.08893194484,1657.60767178694,0.163934945376675,0,12.6203287766503,15.2271110275689,22.1886099664783,2.15071918157297,6.68396022247182,9.6246020468203,23.4790206971439,30.6868650806877,36.7617633490267,932.795781572506,0,0.534196811001766,0.977321756121456,0,6.63725691699814,3.15614827001476,2.41858845571801,2.45186603682668,3.54362271456927,7.07100840271033,7.75284879504663,9.45187696641514,7.12994756769443,4.74055136903724,2.10837217149998,1.03135543248187,193.710135673905,3.96134406868882,2.32845630808958,5.14408884075822,25.7143338781297,22.4744710178609,32.0870590174136,18.5723618959906,0.23467170806371,0,24.6991805821557,0,0.161464426695906,0.0603129249281559,0,0.328281799490123,4.95517422270746,2467.82534445787,0,0.206386867963223,0,0,0,0,0,0.139951452323658,0,12.4107180341965,1.10717597753397,5.08298667817122,4.86024033698106,3.97267762427491,7.42432716737004,6.20375993370175,8.76126630688561,3.14107130380836,5.18459893167171,0,0,0.149516546043979,0,0.194451188344048,0,0,0.234714477291508,0,0,0,0,0,0.608175645870493,0.308132871494482,0.129920822977795,0.179026695667481,0,0.120195449519969,0.295379054349154,0.201932899896295,0.0762068066549998,0.100826185136841,0,0,0,0.680191150845634,0,0,0.167884616364078,12.5573236120924,0,0,2.14368379079066,0,577.741134997259,593.359229857751,559.71891663029,680.710455263347,1015.97737681986,1149.70951182712,988.907962839595,1127.15397167022,1259.2827545671,1161.33637925933,8.61434984948666,7.18244772121856,8.70741389346084,10.2104821168684,15.9306003597267,21.3258469802016,19.7799587743438,22.4578212390395,19.5760717851007,18.9522908822848,21.7992197905606,24.5214243801899,22.8485278226513,22.6649039513237,22.8018811753785,28.5776214769844,21.670368951688,24.6923802193542,20.192209139362,23.9934239819068,23.3151091622082,21.2970967391205,21.6976932852062,21.22057682832,22.77447006051,18.5305991282772,20.8537889074961,16.0472523977084,21.592854101492,20.7622640513363,16.4902675192602,20.5874368164928,20.0523211153148,20.9164735601054,13.5034627686799,20.9840885467875,11.462648813825,16.545071161719,13.1988949127502,11.0295709559758,18.5494268496337 | ||
|short_description=p1@Snap25 | |short_description=p1@Snap25 | ||
}} | }} |
Latest revision as of 19:30, 25 September 2015
Short description: | p1@Snap25 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Snap25_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000028727, ENSMUST00000110098, ENSMUST00000125486, NM_011428, uc008mop.1_5end |
EntrezGene: | Snap25 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.28e-15 | 33 |
neuronal stem cell | 3.28e-15 | 33 |
neuroblast | 3.28e-15 | 33 |
electrically signaling cell | 3.28e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.65e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.65e-13 | 23 |
electrically responsive cell | 1.24e-10 | 39 |
electrically active cell | 1.24e-10 | 39 |
ectodermal cell | 2.68e-10 | 44 |
neurectodermal cell | 2.68e-10 | 44 |
neural cell | 3.84e-10 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.67e-29 | 64 |
neural plate | 2.67e-29 | 64 |
presumptive neural plate | 2.67e-29 | 64 |
nervous system | 6.31e-29 | 75 |
central nervous system | 1.14e-28 | 73 |
ectoderm-derived structure | 1.73e-26 | 95 |
ectoderm | 1.73e-26 | 95 |
presumptive ectoderm | 1.73e-26 | 95 |
regional part of nervous system | 1.27e-25 | 54 |
neural tube | 4.38e-24 | 52 |
neural rod | 4.38e-24 | 52 |
future spinal cord | 4.38e-24 | 52 |
neural keel | 4.38e-24 | 52 |
ecto-epithelium | 8.21e-24 | 73 |
pre-chordal neural plate | 5.83e-23 | 49 |
brain | 9.01e-21 | 47 |
future brain | 9.01e-21 | 47 |
regional part of brain | 4.69e-20 | 46 |
anterior neural tube | 7.88e-19 | 40 |
structure with developmental contribution from neural crest | 9.33e-19 | 92 |
gray matter | 4.80e-18 | 34 |
regional part of forebrain | 4.82e-18 | 39 |
forebrain | 4.82e-18 | 39 |
future forebrain | 4.82e-18 | 39 |
brain grey matter | 4.99e-15 | 29 |
regional part of telencephalon | 4.99e-15 | 29 |
telencephalon | 4.99e-15 | 29 |
cerebral cortex | 2.14e-10 | 21 |
cerebral hemisphere | 2.14e-10 | 21 |
pallium | 2.14e-10 | 21 |
regional part of cerebral cortex | 2.89e-08 | 17 |
occipital lobe | 2.99e-08 | 10 |
visual cortex | 2.99e-08 | 10 |
neocortex | 2.99e-08 | 10 |