FFCP PHASE1:Mm9::chr3:88987053..88987129,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=68521 | |EntrezGene=68521 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2383 | |||
|TSSclassifier=NA | |||
|UniProt=Q5HZJ5,D3Z5C1,D6RFB2 | |UniProt=Q5HZJ5,D3Z5C1,D6RFB2 | ||
|association_with_transcript=0bp_to_ENSMUST00000041913,ENSMUST00000140473,ENSMUST00000147696_5end | |association_with_transcript=0bp_to_ENSMUST00000041913,ENSMUST00000140473,ENSMUST00000147696_5end | ||
|cluster_id=chr3:88987053..88987129,+ | |||
|description=CAGE_peak_1_at_Fam189b_5end | |description=CAGE_peak_1_at_Fam189b_5end | ||
|id=chr3:88987053..88987129,+ | |id=chr3:88987053..88987129,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.66e-13!50;CL:0002319!9.95e-12!43;CL:0000221!1.35e-11!44;CL:0000133!1.35e-11!44;CL:0000393!1.05e-09!39;CL:0000211!1.05e-09!39;CL:0000540!4.90e-08!33;CL:0000047!4.90e-08!33;CL:0000031!4.90e-08!33;CL:0000404!4.90e-08!33 | |ontology_enrichment_celltype=CL:0000055!9.66e-13!50;CL:0002319!9.95e-12!43;CL:0000221!1.35e-11!44;CL:0000133!1.35e-11!44;CL:0000393!1.05e-09!39;CL:0000211!1.05e-09!39;CL:0000540!4.90e-08!33;CL:0000047!4.90e-08!33;CL:0000031!4.90e-08!33;CL:0000404!4.90e-08!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,9.89e-12,43;CL:0000221,1.34e-11,44;CL:0000133,1.34e-11,44;CL:0000393,1.04e-09,39;CL:0000211,1.04e-09,39;CL:0000540,4.88e-08,33;CL:0000047,4.88e-08,33;CL:0000031,4.88e-08,33;CL:0000404,4.88e-08,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.10e-31!73;UBERON:0005743!7.10e-31!73;UBERON:0000073!2.13e-30!75;UBERON:0001016!2.13e-30!75;UBERON:0004121!7.63e-25!102;UBERON:0000924!7.63e-25!102;UBERON:0006601!7.63e-25!102;UBERON:0001049!1.57e-21!52;UBERON:0005068!1.57e-21!52;UBERON:0006241!1.57e-21!52;UBERON:0007135!1.57e-21!52;UBERON:0000955!2.34e-21!50;UBERON:0006238!2.34e-21!50;UBERON:0002616!8.03e-21!49;UBERON:0002346!9.62e-21!71;UBERON:0003075!9.62e-21!71;UBERON:0007284!9.62e-21!71;UBERON:0000033!7.06e-19!63;UBERON:0003080!1.16e-15!40;UBERON:0002780!5.12e-15!39;UBERON:0001890!5.12e-15!39;UBERON:0006240!5.12e-15!39;UBERON:0003056!5.75e-14!49;UBERON:0000153!2.40e-12!94;UBERON:0002020!9.31e-12!34;UBERON:0007811!1.73e-10!86;UBERON:0002791!2.61e-10!29;UBERON:0003528!2.61e-10!29;UBERON:0001893!2.61e-10!29;UBERON:0002619!1.69e-08!17;UBERON:0000956!2.78e-08!21;UBERON:0001869!2.78e-08!21;UBERON:0000203!2.78e-08!21;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0000468!3.36e-07!333 | |ontology_enrichment_uberon=UBERON:0001017!7.10e-31!73;UBERON:0005743!7.10e-31!73;UBERON:0000073!2.13e-30!75;UBERON:0001016!2.13e-30!75;UBERON:0004121!7.63e-25!102;UBERON:0000924!7.63e-25!102;UBERON:0006601!7.63e-25!102;UBERON:0001049!1.57e-21!52;UBERON:0005068!1.57e-21!52;UBERON:0006241!1.57e-21!52;UBERON:0007135!1.57e-21!52;UBERON:0000955!2.34e-21!50;UBERON:0006238!2.34e-21!50;UBERON:0002616!8.03e-21!49;UBERON:0002346!9.62e-21!71;UBERON:0003075!9.62e-21!71;UBERON:0007284!9.62e-21!71;UBERON:0000033!7.06e-19!63;UBERON:0003080!1.16e-15!40;UBERON:0002780!5.12e-15!39;UBERON:0001890!5.12e-15!39;UBERON:0006240!5.12e-15!39;UBERON:0003056!5.75e-14!49;UBERON:0000153!2.40e-12!94;UBERON:0002020!9.31e-12!34;UBERON:0007811!1.73e-10!86;UBERON:0002791!2.61e-10!29;UBERON:0003528!2.61e-10!29;UBERON:0001893!2.61e-10!29;UBERON:0002619!1.69e-08!17;UBERON:0000956!2.78e-08!21;UBERON:0001869!2.78e-08!21;UBERON:0000203!2.78e-08!21;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0000468!3.36e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.98e-31,73;UBERON:0001016,2.10e-30,75;UBERON:0004121,2.42e-24,95;UBERON:0000924,2.42e-24,95;UBERON:0006601,2.42e-24,95;UBERON:0000073,1.85e-22,54;UBERON:0001049,1.55e-21,52;UBERON:0005068,1.55e-21,52;UBERON:0006241,1.55e-21,52;UBERON:0007135,1.55e-21,52;UBERON:0002346,1.21e-20,64;UBERON:0003075,1.21e-20,64;UBERON:0007284,1.21e-20,64;UBERON:0000955,1.00e-19,47;UBERON:0006238,1.00e-19,47;UBERON:0002616,3.36e-19,46;UBERON:0010371,7.54e-18,73;UBERON:0010314,9.94e-17,92;UBERON:0003080,1.15e-15,40;UBERON:0002780,5.08e-15,39;UBERON:0001890,5.08e-15,39;UBERON:0006240,5.08e-15,39;UBERON:0003056,5.71e-14,49;UBERON:0002020,9.25e-12,34;UBERON:0003528,2.60e-10,29;UBERON:0002791,2.60e-10,29;UBERON:0001893,2.60e-10,29;UBERON:0002619,1.69e-08,17;UBERON:0000956,2.77e-08,21;UBERON:0001869,2.77e-08,21;UBERON:0000203,2.77e-08,21;UBERON:0002021,1.70e-07,10;UBERON:0000411,1.70e-07,10;UBERON:0001950,1.70e-07,10 | |||
|phase1_expression=21.6200943591472,0.697950815278722,0,0.90739263392049,0,3.18970616632591,4.20502753071946,19.497621839678,1.40788722151667,1.40438715793196,0.856089841127525,0.8774937489487,18.1472773727078,25.0896554942523,0.333109761815663,1.21485160433896,2.09868563438444,1.73504190947031,2.74228867211478,1.27316895539409,11.6509307506966,0,0,3.19984845586813,1.60586496747019,0.57423196411502,1.7230479846363,1.50829862880122,2.47030445293286,2.52030129759931,1.99557459589774,0,0,0,3.17736781726402,2.1610503896604,1.42918549383658,2.51118978442145,1.5626706890476,1.57057123192139,0.588231488031014,2.73218193983378,1.45653105909346,20.7729749659703,20.2753862439029,17.6204882075214,87.6278305669804,30.741547049643,39.9828852576739,46.4687458787537,47.875356195874,48.8758718840903,0.671130424230945,13.0565185562042,14.452033363126,25.9832030396306,45.8453503902011,22.17389996793,20.4339625468194,21.6886301501533,17.1134478946668,44.3886337010563,64.029225320002,17.0980946283466,19.7773272513395,20.6039233334369,35.3528130411718,22.2846617086502,13.9980976616445,14.3106294631592,14.7227472945967,26.5655415495537,24.5164080456291,13.4739879136449,12.2682202903343,21.1420320920305,41.8440347797677,34.7309559591711,27.8027825193801,19.2553980086083,15.3699241252048,16.1483144872596,36.0146068711781,21.3849791812038,28.1148775909331,22.6864010814724,17.938831780687,23.1135312823373,3.86203585999239,26.8279038379089,6.95674772884027,2.58127163094416,0,0,0.649776417447669,0.448026887097336,9.26933172869562,0,0,0,14.5068722369981,0,0,0,9.52560580449342,8.61423542615335,3.53867111510348,4.22480354960522,9.58070169494535,21.6725523034644,16.8280766963152,21.0081180035377,16.6043158024362,12.8114244469729,17.9910721917628,10.3046604890334,7.66304399976559,13.7369389073916,14.153768831198,18.9267214438469,9.71702681225732,15.5160081003271,14.9113408974498,36.8903804234549,34.1398132105932,2.81002760729451,6.11057134980193,8.99854096490112,5.97230067243404,46.7346794943047,46.6650614874999,24.8795617183472,46.5849178115301,34.7773021969249,39.8953045554355,35.0441128226357,18.7384429484582,9.82815067819735,5.05445516867349,6.52369753248069,14.9638509407109,12.644615743841,21.2473313170312,14.4676625122286,16.3287597963187,14.3487366719032,13.5867500611607,15.2634988736019,16.383167462896,21.936305299467,29.5597888595434,23.0155519048954,29.1949611686878,23.6811473235073,23.2533814140976,15.9227413454795,4.91549231119264,7.72043721344146,6.25159698670304,15.5344329401626,11.9608290590359,10.2635375032778,13.2577051927718,12.5929108318338,9.10175966035532,8.8362899005155,10.7309360559848,9.45799273174073,10.3672705445493,8.04420573987567,7.70153690685629,5.84799949701329,7.90380415047782,7.64976586934119,50.2592977068264,19.8605901892019,1.65209391491899,3.70230793328962,17.7029247944244,16.953277045812,18.1703120464152,14.722897297504,8.45036566610507,10.0819581839656,1.89811624617805,7.74085087202851,6.03204501120647,9.54991065797524,7.99352757188393,2.69645822596266,5.83572734661674,6.37252074413975,19.9151296000736,16.9087798662399,13.5249282807697,13.4409876377907,16.0980564349129,13.6063490587218,9.29577095726582,4.72352473534727,5.02395929092399,6.66344685177723,1.77871576252289,6.84064933435986,6.4864468387357,4.27238013531222,2.43432145666204,2.65294875727659,3.8193877767213,4.02774592431135,3.24270453550071,1.37280706594041,2.87536413054709,1.86070473834252,2.18426371180192,1.76805214562978,1.07638448113147,1.4473305640901,10.5309318394965,9.66406200029472,10.9186534216157,10.5241953180617,10.7957514212711,15.2430694272052,15.2347930167049,8.00047956216975,13.24135210492,9.7444463445461,13.8725648732014,8.35702905050264,11.569893785015,9.54683786637976,24.1266054302836,18.4927932498361,3.93411418415229,4.13905119457099,51.8578405660568,35.2807176642532,0,26.2569764292548,19.2460013843917,20.6932534477218,28.4358885007295,22.2240982095873,26.9586395639697,28.0245765480944,22.6693992937941,26.8875389278407,31.6230222357219,32.1321316421807,22.5684735481147,28.1343653794263,18.8948872850148,26.5601897985782,15.9294166007955,12.3818124439041,10.883648050731,11.6935149448657,19.7852268230118,20.5981549122431,10.8539883130653,14.1778154496227,10.3384239731569,11.6933600436252,10.5418608574999,10.3135543248187,37.4483566329167,21.6073312837572,31.8222362105576,25.9347812388227,39.1921916349425,36.2088699732203,35.2134904088539,28.0107753185431,9.62154003061212,5.71946591332314,13.0111754852428,13.5206727412014,18.4069446433332,11.4594557363496,9.43041517624778,7.38634048852776,5.24665505933731,61.3757749654787,5.63873906632914,15.2726282292785,9.07453184111587,2.82552685507037,4.37421528707281,2.28778173206523,6.79913719975421,7.55737842547753,7.18639863783004,21.0027535963325,16.6076396630096,18.9087104427969,14.2567049884778,15.8907104970996,15.5037420259786,14.1607563704062,11.7367907129977,8.63794608547298,10.4988128366352,8.69875038321696,1.12738587736838,17.1944027950576,11.2511773510826,17.1117045742762,12.01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|phase1_expression=21.6200943591472,0.697950815278722,0,0.90739263392049,0,3.18970616632591,4.20502753071946,19.497621839678,1.40788722151667,1.40438715793196,0.856089841127525,0.8774937489487,18.1472773727078,25.0896554942523,0.333109761815663,1.21485160433896,2.09868563438444,1.73504190947031,2.74228867211478,1.27316895539409,11.6509307506966,0,0,3.19984845586813,1.60586496747019,0.57423196411502,1.7230479846363,1.50829862880122,2.47030445293286,2.52030129759931,1.99557459589774,0,0,0,3.17736781726402,2.1610503896604,1.42918549383658,2.51118978442145,1.5626706890476,1.57057123192139,0.588231488031014,2.73218193983378,1.45653105909346,20.7729749659703,20.2753862439029,17.6204882075214,87.6278305669804,30.741547049643,39.9828852576739,46.4687458787537,47.875356195874,48.8758718840903,0.671130424230945,13.0565185562042,14.452033363126,25.9832030396306,45.8453503902011,22.17389996793,20.4339625468194,21.6886301501533,17.1134478946668,44.3886337010563,64.029225320002,17.0980946283466,19.7773272513395,20.6039233334369,35.3528130411718,22.2846617086502,13.9980976616445,14.3106294631592,14.7227472945967,26.5655415495537,24.5164080456291,13.4739879136449,12.2682202903343,21.1420320920305,41.8440347797677,34.7309559591711,27.8027825193801,19.2553980086083,15.3699241252048,16.1483144872596,36.0146068711781,21.3849791812038,28.1148775909331,22.6864010814724,17.938831780687,23.1135312823373,3.86203585999239,26.8279038379089,6.95674772884027,2.58127163094416,0,0,0.649776417447669,0.448026887097336,9.26933172869562,0,0,0,14.5068722369981,0,0,0,9.52560580449342,8.61423542615335,3.53867111510348,4.22480354960522,9.58070169494535,21.6725523034644,16.8280766963152,21.0081180035377,16.6043158024362,12.8114244469729,17.9910721917628,10.3046604890334,7.66304399976559,13.7369389073916,14.153768831198,18.9267214438469,9.71702681225732,15.5160081003271,14.9113408974498,36.8903804234549,34.1398132105932,2.81002760729451,6.11057134980193,8.99854096490112,5.97230067243404,46.7346794943047,46.6650614874999,24.8795617183472,46.5849178115301,34.7773021969249,39.8953045554355,35.0441128226357,18.7384429484582,9.82815067819735,5.05445516867349,6.52369753248069,14.9638509407109,12.644615743841,21.2473313170312,14.4676625122286,16.3287597963187,14.3487366719032,13.5867500611607,15.2634988736019,16.383167462896,21.936305299467,29.5597888595434,23.0155519048954,29.1949611686878,23.6811473235073,23.2533814140976,15.9227413454795,4.91549231119264,7.72043721344146,6.25159698670304,15.5344329401626,11.9608290590359,10.2635375032778,13.2577051927718,12.5929108318338,9.10175966035532,8.8362899005155,10.7309360559848,9.45799273174073,10.3672705445493,8.04420573987567,7.70153690685629,5.84799949701329,7.90380415047782,7.64976586934119,50.2592977068264,19.8605901892019,1.65209391491899,3.70230793328962,17.7029247944244,16.953277045812,18.1703120464152,14.722897297504,8.45036566610507,10.0819581839656,1.89811624617805,7.74085087202851,6.03204501120647,9.54991065797524,7.99352757188393,2.69645822596266,5.83572734661674,6.37252074413975,19.9151296000736,16.9087798662399,13.5249282807697,13.4409876377907,16.0980564349129,13.6063490587218,9.29577095726582,4.72352473534727,5.02395929092399,6.66344685177723,1.77871576252289,6.84064933435986,6.4864468387357,4.27238013531222,2.43432145666204,2.65294875727659,3.8193877767213,4.02774592431135,3.24270453550071,1.37280706594041,2.87536413054709,1.86070473834252,2.18426371180192,1.76805214562978,1.07638448113147,1.4473305640901,10.5309318394965,9.66406200029472,10.9186534216157,10.5241953180617,10.7957514212711,15.2430694272052,15.2347930167049,8.00047956216975,13.24135210492,9.7444463445461,13.8725648732014,8.35702905050264,11.569893785015,9.54683786637976,24.1266054302836,18.4927932498361,3.93411418415229,4.13905119457099,51.8578405660568,35.2807176642532,0,26.2569764292548,19.2460013843917,20.6932534477218,28.4358885007295,22.2240982095873,26.9586395639697,28.0245765480944,22.6693992937941,26.8875389278407,31.6230222357219,32.1321316421807,22.5684735481147,28.1343653794263,18.8948872850148,26.5601897985782,15.9294166007955,12.3818124439041,10.883648050731,11.6935149448657,19.7852268230118,20.5981549122431,10.8539883130653,14.1778154496227,10.3384239731569,11.6933600436252,10.5418608574999,10.3135543248187,37.4483566329167,21.6073312837572,31.8222362105576,25.9347812388227,39.1921916349425,36.2088699732203,35.2134904088539,28.0107753185431,9.62154003061212,5.71946591332314,13.0111754852428,13.5206727412014,18.4069446433332,11.4594557363496,9.43041517624778,7.38634048852776,5.24665505933731,61.3757749654787,5.63873906632914,15.2726282292785,9.07453184111587,2.82552685507037,4.37421528707281,2.28778173206523,6.79913719975421,7.55737842547753,7.18639863783004,21.0027535963325,16.6076396630096,18.9087104427969,14.2567049884778,15.8907104970996,15.5037420259786,14.1607563704062,11.7367907129977,8.63794608547298,10.4988128366352,8.69875038321696,1.12738587736838,17.1944027950576,11.2511773510826,17.1117045742762,12.01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| ||
|short_description=p1@Fam189b | |short_description=p1@Fam189b | ||
}} | }} |
Latest revision as of 20:19, 25 September 2015
Short description: | p1@Fam189b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam189b_5end |
Coexpression cluster: | MCL_coexpression_mm9:2383 |
Association with transcript: | 0bp_to_ENSMUST00000041913, ENSMUST00000140473, ENSMUST00000147696_5end |
EntrezGene: | Fam189b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 9.89e-12 | 43 |
ectodermal cell | 1.34e-11 | 44 |
neurectodermal cell | 1.34e-11 | 44 |
electrically responsive cell | 1.04e-09 | 39 |
electrically active cell | 1.04e-09 | 39 |
neuron | 4.88e-08 | 33 |
neuronal stem cell | 4.88e-08 | 33 |
neuroblast | 4.88e-08 | 33 |
electrically signaling cell | 4.88e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.98e-31 | 73 |
nervous system | 2.10e-30 | 75 |
ectoderm-derived structure | 2.42e-24 | 95 |
ectoderm | 2.42e-24 | 95 |
presumptive ectoderm | 2.42e-24 | 95 |
regional part of nervous system | 1.85e-22 | 54 |
neural tube | 1.55e-21 | 52 |
neural rod | 1.55e-21 | 52 |
future spinal cord | 1.55e-21 | 52 |
neural keel | 1.55e-21 | 52 |
neurectoderm | 1.21e-20 | 64 |
neural plate | 1.21e-20 | 64 |
presumptive neural plate | 1.21e-20 | 64 |
brain | 1.00e-19 | 47 |
future brain | 1.00e-19 | 47 |
regional part of brain | 3.36e-19 | 46 |
ecto-epithelium | 7.54e-18 | 73 |
structure with developmental contribution from neural crest | 9.94e-17 | 92 |
anterior neural tube | 1.15e-15 | 40 |
regional part of forebrain | 5.08e-15 | 39 |
forebrain | 5.08e-15 | 39 |
future forebrain | 5.08e-15 | 39 |
pre-chordal neural plate | 5.71e-14 | 49 |
gray matter | 9.25e-12 | 34 |
brain grey matter | 2.60e-10 | 29 |
regional part of telencephalon | 2.60e-10 | 29 |
telencephalon | 2.60e-10 | 29 |
regional part of cerebral cortex | 1.69e-08 | 17 |
cerebral cortex | 2.77e-08 | 21 |
cerebral hemisphere | 2.77e-08 | 21 |
pallium | 2.77e-08 | 21 |
occipital lobe | 1.70e-07 | 10 |
visual cortex | 1.70e-07 | 10 |
neocortex | 1.70e-07 | 10 |