FFCP PHASE1:Mm9::chr2:148558114..148558191,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17957 | |EntrezGene=17957 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=D6RHL2,A2APW8,P28663 | |UniProt=D6RHL2,A2APW8,P28663 | ||
|association_with_transcript=0bp_to_ENSMUST00000136513,ENSMUST00000140647,NM_019632,uc008mti.1_5end | |association_with_transcript=0bp_to_ENSMUST00000136513,ENSMUST00000140647,NM_019632,uc008mti.1_5end | ||
|cluster_id=chr2:148558114..148558191,- | |||
|description=CAGE_peak_1_at_Napb_5end | |description=CAGE_peak_1_at_Napb_5end | ||
|id=chr2:148558114..148558191,- | |id=chr2:148558114..148558191,- | ||
|ontology_enrichment_celltype=CL:0000540!8.89e-14!33;CL:0000047!8.89e-14!33;CL:0000031!8.89e-14!33;CL:0000404!8.89e-14!33;CL:0000393!7.49e-12!39;CL:0000211!7.49e-12!39;CL:0000117!2.27e-11!23;CL:0000337!2.27e-11!23;CL:0000221!3.32e-09!44;CL:0000133!3.32e-09!44;CL:0002319!3.66e-09!43;CL:0000055!1.07e-07!50 | |ontology_enrichment_celltype=CL:0000540!8.89e-14!33;CL:0000047!8.89e-14!33;CL:0000031!8.89e-14!33;CL:0000404!8.89e-14!33;CL:0000393!7.49e-12!39;CL:0000211!7.49e-12!39;CL:0000117!2.27e-11!23;CL:0000337!2.27e-11!23;CL:0000221!3.32e-09!44;CL:0000133!3.32e-09!44;CL:0002319!3.66e-09!43;CL:0000055!1.07e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.30e-14,33;CL:0000047,8.30e-14,33;CL:0000031,8.30e-14,33;CL:0000404,8.30e-14,33;CL:0000393,7.07e-12,39;CL:0000211,7.07e-12,39;CL:0000117,2.14e-11,23;CL:0000337,2.14e-11,23;CL:0000221,3.80e-09,44;CL:0000133,3.80e-09,44;CL:0002319,4.20e-09,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.14e-26!102;UBERON:0000924!5.14e-26!102;UBERON:0006601!5.14e-26!102;UBERON:0002346!5.44e-24!71;UBERON:0003075!5.44e-24!71;UBERON:0007284!5.44e-24!71;UBERON:0000073!5.84e-24!75;UBERON:0001016!5.84e-24!75;UBERON:0001017!1.35e-23!73;UBERON:0005743!1.35e-23!73;UBERON:0000033!2.35e-21!63;UBERON:0001049!8.31e-19!52;UBERON:0005068!8.31e-19!52;UBERON:0006241!8.31e-19!52;UBERON:0007135!8.31e-19!52;UBERON:0000955!4.94e-18!50;UBERON:0006238!4.94e-18!50;UBERON:0003056!9.26e-18!49;UBERON:0002616!2.22e-17!49;UBERON:0002020!1.03e-15!34;UBERON:0003080!1.11e-14!40;UBERON:0002780!4.59e-14!39;UBERON:0001890!4.59e-14!39;UBERON:0006240!4.59e-14!39;UBERON:0002791!4.52e-13!29;UBERON:0003528!4.52e-13!29;UBERON:0001893!4.52e-13!29;UBERON:0000468!7.05e-10!333;UBERON:0000956!5.27e-09!21;UBERON:0001869!5.27e-09!21;UBERON:0000203!5.27e-09!21;UBERON:0007811!1.37e-08!86;UBERON:0000153!4.16e-08!94;UBERON:0002619!6.32e-08!17;UBERON:0002021!7.61e-08!10;UBERON:0000411!7.61e-08!10;UBERON:0001950!7.61e-08!10 | |ontology_enrichment_uberon=UBERON:0004121!5.14e-26!102;UBERON:0000924!5.14e-26!102;UBERON:0006601!5.14e-26!102;UBERON:0002346!5.44e-24!71;UBERON:0003075!5.44e-24!71;UBERON:0007284!5.44e-24!71;UBERON:0000073!5.84e-24!75;UBERON:0001016!5.84e-24!75;UBERON:0001017!1.35e-23!73;UBERON:0005743!1.35e-23!73;UBERON:0000033!2.35e-21!63;UBERON:0001049!8.31e-19!52;UBERON:0005068!8.31e-19!52;UBERON:0006241!8.31e-19!52;UBERON:0007135!8.31e-19!52;UBERON:0000955!4.94e-18!50;UBERON:0006238!4.94e-18!50;UBERON:0003056!9.26e-18!49;UBERON:0002616!2.22e-17!49;UBERON:0002020!1.03e-15!34;UBERON:0003080!1.11e-14!40;UBERON:0002780!4.59e-14!39;UBERON:0001890!4.59e-14!39;UBERON:0006240!4.59e-14!39;UBERON:0002791!4.52e-13!29;UBERON:0003528!4.52e-13!29;UBERON:0001893!4.52e-13!29;UBERON:0000468!7.05e-10!333;UBERON:0000956!5.27e-09!21;UBERON:0001869!5.27e-09!21;UBERON:0000203!5.27e-09!21;UBERON:0007811!1.37e-08!86;UBERON:0000153!4.16e-08!94;UBERON:0002619!6.32e-08!17;UBERON:0002021!7.61e-08!10;UBERON:0000411!7.61e-08!10;UBERON:0001950!7.61e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.17e-25,95;UBERON:0000924,6.17e-25,95;UBERON:0006601,6.17e-25,95;UBERON:0001016,6.56e-24,75;UBERON:0001017,1.52e-23,73;UBERON:0002346,2.38e-23,64;UBERON:0003075,2.38e-23,64;UBERON:0007284,2.38e-23,64;UBERON:0010371,1.15e-20,73;UBERON:0000073,4.42e-20,54;UBERON:0001049,9.66e-19,52;UBERON:0005068,9.66e-19,52;UBERON:0006241,9.66e-19,52;UBERON:0007135,9.66e-19,52;UBERON:0010314,5.23e-18,92;UBERON:0003056,1.08e-17,49;UBERON:0000955,4.82e-16,47;UBERON:0006238,4.82e-16,47;UBERON:0002020,1.24e-15,34;UBERON:0002616,2.07e-15,46;UBERON:0003080,1.31e-14,40;UBERON:0002780,5.43e-14,39;UBERON:0001890,5.43e-14,39;UBERON:0006240,5.43e-14,39;UBERON:0003528,5.51e-13,29;UBERON:0002791,5.51e-13,29;UBERON:0001893,5.51e-13,29;UBERON:0000956,6.46e-09,21;UBERON:0001869,6.46e-09,21;UBERON:0000203,6.46e-09,21;UBERON:0002021,7.34e-08,10;UBERON:0000411,7.34e-08,10;UBERON:0001950,7.34e-08,10;UBERON:0002619,7.85e-08,17 | |||
|phase1_expression=7.20669811971573,0,0.909998478779072,2.11724947914781,0.500895729946347,1.17515490338323,0.934450562382103,0.387369970324729,0.140788722151667,0.234064526321993,0.171217968225505,0.0797721589953364,1.02720437958723,0.437102012094987,0.999329285446988,0.404950534779652,0,0.473193248037357,0.548457734422955,0,67.1841992193451,0.198581902401771,0.783599367416806,0.639969691173627,0.45881856213434,0,0,1.07735616342945,0.570070258369122,0.252030129759931,0.443461021310609,0,0,0,2.3108129580102,1.82858109894342,1.83752420636132,0,0.7813353445238,0.523523743973798,0.588231488031014,0,0.485510353031154,7.93149953246137,6.89363132292699,6.9747765821439,1.56478268869608,2.61630187656536,0.878744730937887,4.08302788055995,2.65974201088189,1.43752564364972,0,0,0.672187598284928,2.05807548828758,4.29800159908135,3.6097046459421,28.3243045203437,35.4423956112262,31.691570175309,2.71075625655306,3.55717918444456,3.1496490104849,0.988866362566974,2.1314403448383,2.69640099466564,4.61061966385865,15.0349937847293,13.3655878948374,14.5124223332454,90.2657110716019,87.463942216839,21.8033622602618,18.7857123195743,24.8189072384706,405.22644207775,340.031381320855,352.373387289823,29.938187314754,38.6077856002169,40.1103295328705,219.717020214087,234.672008383211,277.787214458241,131.109720535782,161.87660106858,57.038230422542,9.08714319998209,15.1898835814639,8.40607017234866,1.72084775396277,0,4.85732872474035,4.54843492213368,5.82434953226536,19.1004411379183,3.91989741929533,2.07828803682295,1.7666978725517,7.46470124816407,3.84979432242953,12.7402619853323,7.11066703153331,0.432982082022428,0.760079596425296,0.505524445014783,12.9027784082538,2.58937883647172,11.5784868470563,6.41895709034703,9.13396434936424,9.91646638201052,12.0578112442098,14.345822270556,6.78599593180248,3.46072954828123,6.79616977523585,3.5384422077995,7.60304194752823,7.28777010919299,10.6672555689749,7.45567044872489,222.513405728776,203.791645729492,2.04365644166873,0.11981512450592,1.19980546198682,0.762421362438388,353.505908995382,253.455333961519,62.9528304085451,462.198867391263,411.957601759162,288.825381937789,292.683238574235,4.58277137326423,4.72746488318353,5.55990068554084,41.8779293214083,7.67710613479952,7.81667155073808,16.2055916824814,21.8521985861787,27.4187091579851,32.7971123929215,29.9845518591132,101.670424700433,1.29340795759705,7.18603104637713,8.62160508403349,5.04150184583422,5.83899223373756,8.358051996532,5.35033554660653,6.56813080501028,0.702213187313235,0.51469581422943,0.284163499395593,2.07125772535502,3.98694301967864,3.78130329068131,2.60419209143731,4.9191057936851,4.31947916084659,4.88321283975857,4.56064782379353,4.67061369468678,4.60767579757745,7.38753588355929,3.56702762001765,3.80119967305864,3.51280184465681,3.89198614405078,395.134813351995,54.9510630105379,1.98251269790279,2.64450566663544,4.05247676016945,4.41249676534833,6.70110798874885,4.03367049246685,4.66993892074228,6.08722003560189,0.474529061544512,3.95277491337626,5.7807098024062,6.56556357735798,5.06906626509712,4.49409704327111,2.80979464837102,3.58454291857861,1.51734320762465,4.45569199177942,10.1436962105772,3.86937522906097,5.43066964069352,3.7873342740772,4.3000845244495,6.34723636312289,5.80895293013087,3.33172342588861,4.74324203339438,1.16791574001266,2.16214894624523,1.57403478669398,1.62288097110802,0.964708639009667,1.2731292589071,1.72617682470486,2.43202840162553,2.47105271869273,4.31304619582064,2.23284568601102,2.18426371180192,2.77836765741823,3.22915344339442,4.82443521363367,3.32555742299888,2.65287976478679,3.7481944581666,3.05541154395339,3.28566347603903,7.37027532743989,4.04674189506223,4.29294025287157,3.94087860265477,5.09368786192182,3.82691444777969,6.71839590334526,3.62638461918381,6.94315481191256,19.6028669121054,5.4390568381871,4.42587845717133,4.41498794087572,395.436103139932,341.320431356496,2.45902418065013,22.7223834483936,20.5080342620567,20.3028147034252,28.0050417052639,10.9925647058174,11.1399337041197,15.8522857241746,19.4309136803949,22.7959569170823,24.1125544547379,376.90990416278,8.94222536812092,3.5613120733451,5.04949573996086,5.60898418106621,13.2745138339963,2.91336763385978,3.93020624054176,4.52652191414155,3.2483208216885,5.22639751504677,4.65170927702798,6.18007340111759,5.70395805415554,9.48110273807448,7.37930260024991,10.3135543248187,29.2778060948258,5.58189391497062,4.39819524861365,5.78709994585299,10.1083933176096,9.63191615051181,13.9866667511803,10.3518082698964,3.05073220482823,2.1183207086382,10.8058915046931,9.23363016472288,5.65125493435669,4.16159182004275,2.626191568069,1.31312719796049,3.20628920292836,346.745314759653,1.53783792718067,2.88941615148511,2.22233432843654,1.13021074202815,1.23024804948923,1.37266903923914,1.01987057996313,0.69975726161829,1.65839968565309,5.72802370809068,5.3777118908793,4.67634774391752,7.02034715341708,5.43629569637619,5.24070152990826,5.66430254816247,7.10819719237889,6.80565449158477,4.66613903850454,4.97071450469541,0.563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|phase1_expression=7.20669811971573,0,0.909998478779072,2.11724947914781,0.500895729946347,1.17515490338323,0.934450562382103,0.387369970324729,0.140788722151667,0.234064526321993,0.171217968225505,0.0797721589953364,1.02720437958723,0.437102012094987,0.999329285446988,0.404950534779652,0,0.473193248037357,0.548457734422955,0,67.1841992193451,0.198581902401771,0.783599367416806,0.639969691173627,0.45881856213434,0,0,1.07735616342945,0.570070258369122,0.252030129759931,0.443461021310609,0,0,0,2.3108129580102,1.82858109894342,1.83752420636132,0,0.7813353445238,0.523523743973798,0.588231488031014,0,0.485510353031154,7.93149953246137,6.89363132292699,6.9747765821439,1.56478268869608,2.61630187656536,0.878744730937887,4.08302788055995,2.65974201088189,1.43752564364972,0,0,0.672187598284928,2.05807548828758,4.29800159908135,3.6097046459421,28.3243045203437,35.4423956112262,31.691570175309,2.71075625655306,3.55717918444456,3.1496490104849,0.988866362566974,2.1314403448383,2.69640099466564,4.61061966385865,15.0349937847293,13.3655878948374,14.5124223332454,90.2657110716019,87.463942216839,21.8033622602618,18.7857123195743,24.8189072384706,405.22644207775,340.031381320855,352.373387289823,29.938187314754,38.6077856002169,40.1103295328705,219.717020214087,234.672008383211,277.787214458241,131.109720535782,161.87660106858,57.038230422542,9.08714319998209,15.1898835814639,8.40607017234866,1.72084775396277,0,4.85732872474035,4.54843492213368,5.82434953226536,19.1004411379183,3.91989741929533,2.07828803682295,1.7666978725517,7.46470124816407,3.84979432242953,12.7402619853323,7.11066703153331,0.432982082022428,0.760079596425296,0.505524445014783,12.9027784082538,2.58937883647172,11.5784868470563,6.41895709034703,9.13396434936424,9.91646638201052,12.0578112442098,14.345822270556,6.78599593180248,3.46072954828123,6.79616977523585,3.5384422077995,7.60304194752823,7.28777010919299,10.6672555689749,7.45567044872489,222.513405728776,203.791645729492,2.04365644166873,0.11981512450592,1.19980546198682,0.762421362438388,353.505908995382,253.455333961519,62.9528304085451,462.198867391263,411.957601759162,288.825381937789,292.683238574235,4.58277137326423,4.72746488318353,5.55990068554084,41.8779293214083,7.67710613479952,7.81667155073808,16.2055916824814,21.8521985861787,27.4187091579851,32.7971123929215,29.9845518591132,101.670424700433,1.29340795759705,7.18603104637713,8.62160508403349,5.04150184583422,5.83899223373756,8.358051996532,5.35033554660653,6.56813080501028,0.702213187313235,0.51469581422943,0.284163499395593,2.07125772535502,3.98694301967864,3.78130329068131,2.60419209143731,4.9191057936851,4.31947916084659,4.88321283975857,4.56064782379353,4.67061369468678,4.60767579757745,7.38753588355929,3.56702762001765,3.80119967305864,3.51280184465681,3.89198614405078,395.134813351995,54.9510630105379,1.98251269790279,2.64450566663544,4.05247676016945,4.41249676534833,6.70110798874885,4.03367049246685,4.66993892074228,6.08722003560189,0.474529061544512,3.95277491337626,5.7807098024062,6.56556357735798,5.06906626509712,4.49409704327111,2.80979464837102,3.58454291857861,1.51734320762465,4.45569199177942,10.1436962105772,3.86937522906097,5.43066964069352,3.7873342740772,4.3000845244495,6.34723636312289,5.80895293013087,3.33172342588861,4.74324203339438,1.16791574001266,2.16214894624523,1.57403478669398,1.62288097110802,0.964708639009667,1.2731292589071,1.72617682470486,2.43202840162553,2.47105271869273,4.31304619582064,2.23284568601102,2.18426371180192,2.77836765741823,3.22915344339442,4.82443521363367,3.32555742299888,2.65287976478679,3.7481944581666,3.05541154395339,3.28566347603903,7.37027532743989,4.04674189506223,4.29294025287157,3.94087860265477,5.09368786192182,3.82691444777969,6.71839590334526,3.62638461918381,6.94315481191256,19.6028669121054,5.4390568381871,4.42587845717133,4.41498794087572,395.436103139932,341.320431356496,2.45902418065013,22.7223834483936,20.5080342620567,20.3028147034252,28.0050417052639,10.9925647058174,11.1399337041197,15.8522857241746,19.4309136803949,22.7959569170823,24.1125544547379,376.90990416278,8.94222536812092,3.5613120733451,5.04949573996086,5.60898418106621,13.2745138339963,2.91336763385978,3.93020624054176,4.52652191414155,3.2483208216885,5.22639751504677,4.65170927702798,6.18007340111759,5.70395805415554,9.48110273807448,7.37930260024991,10.3135543248187,29.2778060948258,5.58189391497062,4.39819524861365,5.78709994585299,10.1083933176096,9.63191615051181,13.9866667511803,10.3518082698964,3.05073220482823,2.1183207086382,10.8058915046931,9.23363016472288,5.65125493435669,4.16159182004275,2.626191568069,1.31312719796049,3.20628920292836,346.745314759653,1.53783792718067,2.88941615148511,2.22233432843654,1.13021074202815,1.23024804948923,1.37266903923914,1.01987057996313,0.69975726161829,1.65839968565309,5.72802370809068,5.3777118908793,4.67634774391752,7.02034715341708,5.43629569637619,5.24070152990826,5.66430254816247,7.10819719237889,6.80565449158477,4.66613903850454,4.97071450469541,0.563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| ||
|short_description=p1@Napb | |short_description=p1@Napb | ||
}} | }} |
Latest revision as of 21:07, 25 September 2015
Short description: | p1@Napb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Napb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000136513, ENSMUST00000140647, NM_019632, uc008mti.1_5end |
EntrezGene: | Napb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.30e-14 | 33 |
neuronal stem cell | 8.30e-14 | 33 |
neuroblast | 8.30e-14 | 33 |
electrically signaling cell | 8.30e-14 | 33 |
electrically responsive cell | 7.07e-12 | 39 |
electrically active cell | 7.07e-12 | 39 |
CNS neuron (sensu Vertebrata) | 2.14e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.14e-11 | 23 |
ectodermal cell | 3.80e-09 | 44 |
neurectodermal cell | 3.80e-09 | 44 |
neural cell | 4.20e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.17e-25 | 95 |
ectoderm | 6.17e-25 | 95 |
presumptive ectoderm | 6.17e-25 | 95 |
nervous system | 6.56e-24 | 75 |
central nervous system | 1.52e-23 | 73 |
neurectoderm | 2.38e-23 | 64 |
neural plate | 2.38e-23 | 64 |
presumptive neural plate | 2.38e-23 | 64 |
ecto-epithelium | 1.15e-20 | 73 |
regional part of nervous system | 4.42e-20 | 54 |
neural tube | 9.66e-19 | 52 |
neural rod | 9.66e-19 | 52 |
future spinal cord | 9.66e-19 | 52 |
neural keel | 9.66e-19 | 52 |
structure with developmental contribution from neural crest | 5.23e-18 | 92 |
pre-chordal neural plate | 1.08e-17 | 49 |
brain | 4.82e-16 | 47 |
future brain | 4.82e-16 | 47 |
gray matter | 1.24e-15 | 34 |
regional part of brain | 2.07e-15 | 46 |
anterior neural tube | 1.31e-14 | 40 |
regional part of forebrain | 5.43e-14 | 39 |
forebrain | 5.43e-14 | 39 |
future forebrain | 5.43e-14 | 39 |
brain grey matter | 5.51e-13 | 29 |
regional part of telencephalon | 5.51e-13 | 29 |
telencephalon | 5.51e-13 | 29 |
cerebral cortex | 6.46e-09 | 21 |
cerebral hemisphere | 6.46e-09 | 21 |
pallium | 6.46e-09 | 21 |
occipital lobe | 7.34e-08 | 10 |
visual cortex | 7.34e-08 | 10 |
neocortex | 7.34e-08 | 10 |
regional part of cerebral cortex | 7.85e-08 | 17 |