FFCP PHASE1:Mm9::chr2:163428030..163428045,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76080 | |EntrezGene=76080 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9D3D0 | |UniProt=Q9D3D0 | ||
|association_with_transcript=-4bp_to_ENSMUST00000171696,NM_029512,NM_181734,uc008ntc.1,uc008ntd.1,uc008nte.1,uc008ntf.1_5end | |association_with_transcript=-4bp_to_ENSMUST00000171696,NM_029512,NM_181734,uc008ntc.1,uc008ntd.1,uc008nte.1,uc008ntf.1_5end | ||
|cluster_id=chr2:163428030..163428045,+ | |||
|description=CAGE_peak_2_at_Ttpal_5end | |description=CAGE_peak_2_at_Ttpal_5end | ||
|id=chr2:163428030..163428045,+ | |id=chr2:163428030..163428045,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.09e-13!23;CL:0000337!1.09e-13!23;CL:0000540!1.80e-12!33;CL:0000047!1.80e-12!33;CL:0000031!1.80e-12!33;CL:0000404!1.80e-12!33;CL:0000393!1.27e-11!39;CL:0000211!1.27e-11!39;CL:0000221!1.59e-11!44;CL:0000133!1.59e-11!44;CL:0002319!1.92e-11!43;CL:0000055!2.95e-11!50 | |ontology_enrichment_celltype=CL:0000117!1.09e-13!23;CL:0000337!1.09e-13!23;CL:0000540!1.80e-12!33;CL:0000047!1.80e-12!33;CL:0000031!1.80e-12!33;CL:0000404!1.80e-12!33;CL:0000393!1.27e-11!39;CL:0000211!1.27e-11!39;CL:0000221!1.59e-11!44;CL:0000133!1.59e-11!44;CL:0002319!1.92e-11!43;CL:0000055!2.95e-11!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.01e-14,23;CL:0000337,7.01e-14,23;CL:0000540,1.21e-12,33;CL:0000047,1.21e-12,33;CL:0000031,1.21e-12,33;CL:0000404,1.21e-12,33;CL:0000393,7.85e-12,39;CL:0000211,7.85e-12,39;CL:0000221,1.22e-11,44;CL:0000133,1.22e-11,44;CL:0002319,1.47e-11,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.58e-24!73;UBERON:0005743!1.58e-24!73;UBERON:0000073!6.86e-24!75;UBERON:0001016!6.86e-24!75;UBERON:0001049!7.37e-21!52;UBERON:0005068!7.37e-21!52;UBERON:0006241!7.37e-21!52;UBERON:0007135!7.37e-21!52;UBERON:0000955!2.56e-20!50;UBERON:0006238!2.56e-20!50;UBERON:0002616!8.27e-20!49;UBERON:0004121!2.90e-19!102;UBERON:0000924!2.90e-19!102;UBERON:0006601!2.90e-19!102;UBERON:0003080!1.52e-18!40;UBERON:0002780!2.47e-18!39;UBERON:0001890!2.47e-18!39;UBERON:0006240!2.47e-18!39;UBERON:0002020!3.01e-18!34;UBERON:0000033!1.38e-17!63;UBERON:0003056!1.89e-16!49;UBERON:0002346!2.83e-16!71;UBERON:0003075!2.83e-16!71;UBERON:0007284!2.83e-16!71;UBERON:0002791!9.62e-16!29;UBERON:0003528!9.62e-16!29;UBERON:0001893!9.62e-16!29;UBERON:0000153!9.43e-15!94;UBERON:0007811!5.45e-14!86;UBERON:0000956!1.73e-11!21;UBERON:0001869!1.73e-11!21;UBERON:0000203!1.73e-11!21;UBERON:0002619!1.80e-09!17;UBERON:0004111!5.14e-07!122;UBERON:0002021!6.41e-07!10;UBERON:0000411!6.41e-07!10;UBERON:0001950!6.41e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.81e-25,73;UBERON:0001016,3.40e-24,75;UBERON:0000073,8.15e-23,54;UBERON:0004121,9.19e-22,95;UBERON:0000924,9.19e-22,95;UBERON:0006601,9.19e-22,95;UBERON:0001049,3.63e-21,52;UBERON:0005068,3.63e-21,52;UBERON:0006241,3.63e-21,52;UBERON:0007135,3.63e-21,52;UBERON:0002346,4.42e-19,64;UBERON:0003075,4.42e-19,64;UBERON:0007284,4.42e-19,64;UBERON:0003080,8.17e-19,40;UBERON:0002780,1.33e-18,39;UBERON:0001890,1.33e-18,39;UBERON:0006240,1.33e-18,39;UBERON:0000955,1.47e-18,47;UBERON:0006238,1.47e-18,47;UBERON:0002020,1.63e-18,34;UBERON:0010371,3.10e-18,73;UBERON:0002616,4.70e-18,46;UBERON:0003056,1.42e-16,49;UBERON:0003528,5.72e-16,29;UBERON:0002791,5.72e-16,29;UBERON:0001893,5.72e-16,29;UBERON:0000956,1.20e-11,21;UBERON:0001869,1.20e-11,21;UBERON:0000203,1.20e-11,21;UBERON:0010314,9.30e-11,92;UBERON:0002619,1.35e-09,17;UBERON:0002021,5.26e-07,10;UBERON:0000411,5.26e-07,10;UBERON:0001950,5.26e-07,10 | |||
|phase1_expression=1.92178616525753,1.04692622291808,2.27499619694768,1.51232105653415,0,1.6787927191189,1.16806320297763,1.67860320474049,0.422366166455,0.468129052643987,1.02730780935303,1.27635454392538,1.71200729931206,1.48614684112296,0.999329285446988,2.02475267389826,0,2.20823515750766,4.2505474417779,2.54633791078818,1.44573593256819,0.695036658406197,1.04479915655574,1.43993180514066,1.83527424853736,1.72269589234506,1.29228598847722,1.07735616342945,1.14014051673824,0.504060259519861,1.77384408524244,1.90509202037889,1.84519436275371,0,0.577703239502549,1.66234645358492,0.612508068787107,2.51118978442145,0,0.523523743973798,0,0.683045484958446,0.485510353031154,1.25896817975577,1.52065396829272,2.56965453026354,3.12956537739216,1.09012578190223,3.29529274101708,1.94429899074283,1.81982348112971,4.31257693094915,3.52343472721246,2.17608642603403,0.672187598284928,2.57259436035947,3.15186783932632,0.515672092277442,7.89034197352431,4.23192783417626,6.97214543856797,1.69422266034566,0.889294796111139,0.449949858640699,0.988866362566974,1.4209602298922,1.79760066311043,0.384218305321555,3.21437798156281,3.78016627328734,4.41682418837902,2.85650984403804,5.07997644188711,3.55223317723367,3.64212789869298,3.67687514644008,9.91042928994498,6.89511625660014,4.76180253094355,5.67111037239834,5.12330804173494,5.73004707612436,3.62937898701795,3.37657566019008,5.19514042441154,3.53554302568401,3.84403538157578,3.72798891650601,0.908714319998209,2.04043212288321,0.579728977403356,2.58127163094416,0.679971333707751,1.07940638327563,2.59910566979068,1.79210754838934,0.842666520790511,1.53387290320252,1.55871602761721,0.70667914902068,1.97180787687353,0,5.09610479413291,7.11066703153331,0.865964164044856,0.253359865475099,1.01104889002957,1.02765491747154,1.29468941823586,1.7813056687779,2.4287945747259,0.304465478312141,1.38369298353635,0.753613202763113,0.470354828542819,2.01066546127481,2.96633961281249,0.722996784599558,0.884610551949874,0.485300549842228,1.76673214768315,0.484875253135222,1.86391761218122,1.17112318804619,2.30391377494801,0.510914110417183,0.239630249011841,3.59941638596045,0.254140454146129,2.39665023047716,2.74500361691176,4.14659361972453,4.51943232499919,7.41574826257959,2.90903262383384,5.51620294430376,1.42575109390443,1.36847667671102,1.76905930903572,1.05220927943237,1.95180664444056,1.37941262660084,3.24111833649629,1.50704817835715,2.4493139694478,1.5373646434182,2.15513966487376,0.776110112217047,1.72454394346274,1.89106080167819,1.93546236580344,3.28793598641362,2.22437799380478,1.74126083261083,2.26360350048738,2.18937693500343,0.702213187313235,0.51469581422943,0.852490498186778,1.86413195281952,1.64168241986767,1.08037236876609,0.710234206755631,0.590292695242212,1.69693824176116,0.930135779001631,0.536546802799238,0.934122738937356,1.31647879930784,1.47750717671186,1.13496333364198,1.16959989940266,0.658650345873152,1.34206418760372,4.41608891984667,2.88132914661996,0.330418782983798,1.05780226665418,2.98603550749328,0.928946687441754,1.67527699718721,1.61346819698674,2.00140239460383,1.71203063501303,2.37264530772256,0.658795818896044,1.75934646160189,0.795825888164603,1.16978452271472,0.898819408654221,0.864552199498777,0.796565093017469,3.03468641524931,2.39921876480431,2.25415471346161,1.22190796707189,1.93952487167626,1.82353131714828,1.58091342810643,0.590440591918409,1.56998727841375,1.1105744752962,1.1858105083486,1.50160595144485,0.786235980452812,0.674586337154561,1.01430060694251,0.482354319504834,0.50925170356284,0.863088412352432,0.648540907100142,0.823684239564244,2.87536413054709,2.60498663367952,0.936113019343682,1.51547326768267,2.87035861635059,2.41221760681684,1.84753190166605,1.51593129416388,1.79261474086228,1.52770577197669,0.469380496577004,1.84256883185997,1.42826184531608,2.14647012643579,0.788175720530955,1.55025282754142,1.43509291791738,1.14704320301017,0.690739927463582,1.44649058581512,7.53956419696361,5.98296252200581,1.47529281905711,0,1.9266070798535,2.34423373184406,1.80328439914343,0.757412781613119,1.26203287766503,2.34263246577983,1.93881057959519,2.86762557543062,3.34198011123591,2.54768877709949,1.61924280669958,1.46127928955656,1.18586333383957,3.53453448063988,1.13552068166615,1.95872164033981,1.14020871547503,1.15479086080775,2.65490276679926,1.45668381692989,1.51161778482376,0.943025398779491,1.18120757152309,0.307435147943927,1.80899805217755,1.45413491791002,1.06949213515416,0.948110273807448,2.10837217149998,0,1.70219802876894,3.06103859853227,2.58717367565509,3.64372959553707,3.3694644392032,2.85390108163313,1.48094118541909,3.04464949114599,0.469343416127421,1.48282449604674,2.20528398054962,2.14352128823924,1.13025098687134,2.47282992205439,2.02932984805332,1.96969079694074,0.291480836629851,3.15223013417866,0.854354403989263,1.03193433981611,1.66675074632741,0.565105371014073,0.683471138605126,0.686334519619568,0.509935289981566,0,0.552799895217695,0,2.05618395827738,1.42323626988794,1.18805874903981,2.71814784818809,1.965263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| ||
|short_description=p2@Ttpal | |short_description=p2@Ttpal | ||
}} | }} |
Latest revision as of 02:07, 26 September 2015
Short description: | p2@Ttpal |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ttpal_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENSMUST00000171696, NM_029512, NM_181734, uc008ntc.1, uc008ntd.1, uc008nte.1, uc008ntf.1_5end |
EntrezGene: | Ttpal |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.01e-14 | 23 |
neuroblast (sensu Vertebrata) | 7.01e-14 | 23 |
neuron | 1.21e-12 | 33 |
neuronal stem cell | 1.21e-12 | 33 |
neuroblast | 1.21e-12 | 33 |
electrically signaling cell | 1.21e-12 | 33 |
electrically responsive cell | 7.85e-12 | 39 |
electrically active cell | 7.85e-12 | 39 |
ectodermal cell | 1.22e-11 | 44 |
neurectodermal cell | 1.22e-11 | 44 |
neural cell | 1.47e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.81e-25 | 73 |
nervous system | 3.40e-24 | 75 |
regional part of nervous system | 8.15e-23 | 54 |
ectoderm-derived structure | 9.19e-22 | 95 |
ectoderm | 9.19e-22 | 95 |
presumptive ectoderm | 9.19e-22 | 95 |
neural tube | 3.63e-21 | 52 |
neural rod | 3.63e-21 | 52 |
future spinal cord | 3.63e-21 | 52 |
neural keel | 3.63e-21 | 52 |
neurectoderm | 4.42e-19 | 64 |
neural plate | 4.42e-19 | 64 |
presumptive neural plate | 4.42e-19 | 64 |
anterior neural tube | 8.17e-19 | 40 |
regional part of forebrain | 1.33e-18 | 39 |
forebrain | 1.33e-18 | 39 |
future forebrain | 1.33e-18 | 39 |
brain | 1.47e-18 | 47 |
future brain | 1.47e-18 | 47 |
gray matter | 1.63e-18 | 34 |
ecto-epithelium | 3.10e-18 | 73 |
regional part of brain | 4.70e-18 | 46 |
pre-chordal neural plate | 1.42e-16 | 49 |
brain grey matter | 5.72e-16 | 29 |
regional part of telencephalon | 5.72e-16 | 29 |
telencephalon | 5.72e-16 | 29 |
cerebral cortex | 1.20e-11 | 21 |
cerebral hemisphere | 1.20e-11 | 21 |
pallium | 1.20e-11 | 21 |
structure with developmental contribution from neural crest | 9.30e-11 | 92 |
regional part of cerebral cortex | 1.35e-09 | 17 |
occipital lobe | 5.26e-07 | 10 |
visual cortex | 5.26e-07 | 10 |
neocortex | 5.26e-07 | 10 |