FFCP PHASE1:Mm9::chr19:8797656..8797777,-: Difference between revisions
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{{FFCP|EntrezGene=17254|HGNC=|MCL_coexpression_id=1|UniProt=G3UWA6,P10852|association_with_transcript=81bp_to_ENSMUST00000170157,NM_001161413,uc008gmi.2_5end|description=CAGE_peak_2_at_Slc3a2_5end|id=chr19:8797656..8797777,-|ontology_enrichment_celltype=CL:0000540!9.29e-10!33;CL:0000047!9.29e-10!33;CL:0000031!9.29e-10!33;CL:0000404!9.29e-10!33;CL:0000117!1.09e-09!23;CL:0000337!1.09e-09!23;CL:0002319!1.18e-09!43;CL:0000221!2.49e-09!44;CL:0000133!2.49e-09!44;CL:0000055!6.44e-09!50;CL:0000393!1.54e-08!39;CL:0000211!1.54e-08!39|ontology_enrichment_celltype_v019_2=CL:0000540,9.29e-10,33;CL:0000047,9.29e-10,33;CL:0000031,9.29e-10,33;CL:0000404,9.29e-10,33;CL:0000117,1.09e-09,23;CL:0000337,1.09e-09,23;CL:0002319,1.18e-09,43;CL:0000221,2.49e-09,44;CL:0000133,2.49e-09,44;CL:0000393,1.54e-08,39;CL:0000211,1.54e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.23e-26!73;UBERON:0005743!1.23e-26!73;UBERON:0000073!1.80e-24!75;UBERON:0001016!1.80e-24!75;UBERON:0002346!1.99e-23!71;UBERON:0003075!1.99e-23!71;UBERON:0007284!1.99e-23!71;UBERON:0004121!4.05e-22!102;UBERON:0000924!4.05e-22!102;UBERON:0006601!4.05e-22!102;UBERON:0001049!5.20e-21!52;UBERON:0005068!5.20e-21!52;UBERON:0006241!5.20e-21!52;UBERON:0007135!5.20e-21!52;UBERON:0000955!4.55e-20!50;UBERON:0006238!4.55e-20!50;UBERON:0000033!6.63e-20!63;UBERON:0002616!1.70e-19!49;UBERON:0003056!7.41e-17!49;UBERON:0002020!2.31e-16!34;UBERON:0003080!1.72e-15!40;UBERON:0002780!5.51e-15!39;UBERON:0001890!5.51e-15!39;UBERON:0006240!5.51e-15!39;UBERON:0002791!8.92e-14!29;UBERON:0003528!8.92e-14!29;UBERON:0001893!8.92e-14!29;UBERON:0000956!5.08e-10!21;UBERON:0001869!5.08e-10!21;UBERON:0000203!5.08e-10!21;UBERON:0002619!3.59e-09!17;UBERON:0002021!4.14e-08!10;UBERON:0000411!4.14e-08!10;UBERON:0001950!4.14e-08!10;UBERON:0007811!1.36e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.23e-26,73;UBERON:0001016,1.80e-24,75;UBERON:0002346,4.81e-23,64;UBERON:0003075,4.81e-23,64;UBERON:0007284,4.81e-23,64;UBERON:0000073,2.89e-22,54;UBERON:0004121,2.93e-21,95;UBERON:0000924,2.93e-21,95;UBERON:0006601,2.93e-21,95;UBERON:0001049,5.20e-21,52;UBERON:0005068,5.20e-21,52;UBERON:0006241,5.20e-21,52;UBERON:0007135,5.20e-21,52;UBERON:0000955,2.59e-18,47;UBERON:0006238,2.59e-18,47;UBERON:0002616,9.40e-18,46;UBERON:0010371,2.55e-17,73;UBERON:0003056,7.41e-17,49;UBERON:0002020,2.31e-16,34;UBERON:0003080,1.72e-15,40;UBERON:0002780,5.51e-15,39;UBERON:0001890,5.51e-15,39;UBERON:0006240,5.51e-15,39;UBERON:0003528,8.92e-14,29;UBERON:0002791,8.92e-14,29;UBERON:0001893,8.92e-14,29;UBERON:0010314,6.90e-13,92;UBERON:0000956,5.08e-10,21;UBERON:0001869,5.08e-10,21;UBERON:0000203,5.08e-10,21;UBERON:0002619,3.59e-09,17;UBERON:0002021,4.14e-08,10;UBERON:0000411,4.14e-08,10;UBERON:0001950,4.14e-08,10|phase1_expression=11.5307169915452,9.07336059862339,10.4649825059593,16.030603199262,16.5295590882295,11.0800319461847,6.07392865548367,16.140415430197,3.51971805379167,5.38348410540585,2.22583358693156,1.7549874978974,11.9840510951844,9.87850547334671,3.99731714178795,4.85940641735582,8.39474253753776,3.62781490161973,4.52477630898938,1.27316895539409,19.1347402839907,7.14894848646374,10.4479915655574,8.95957567643077,10.782236210157,11.4846392823004,12.4920978886132,10.9890328669803,10.8313349090133,12.3494763582366,10.4213340007993,11.4305521222734,3.69038872550742,15.8481681015439,19.6419101430867,22.275442478038,18.9877501324003,6.69650609179052,1.5626706890476,4.18818995179039,12.9410927366823,3.41522742479223,2.91306211818692,16.8701736087274,16.9299475136589,13.5824596599644,64.1560902365392,9.59310688073965,20.6505011770404,18.4708404120569,24.4976237844384,17.2503077237966,8.38913030288682,11.6057942721815,8.4023449785616,10.5476368774738,9.74213695791773,12.3761302146586,24.8849246857305,35.4423956112262,23.4517619297286,43.0332555727798,47.1326241938904,12.5985960419396,18.7884608887725,18.4724829885986,32.6564120465061,29.9690278150813,18.2493717662921,20.7909145030804,18.718921560273,53.4167340835113,41.744154239855,17.1487118900936,17.3480302543008,21.1420320920305,46.2486700197433,39.8384494825786,38.2480267808046,28.2236655742615,26.348441357494,24.4829284161677,40.2023518561989,44.4582461925027,46.7562638197039,31.8198872311561,33.5997166685883,28.7055146570963,4.7707501799906,6.65029728939713,15.0729534124872,20.6501730475533,13.599426674155,17.810205324048,22.7421746106684,14.7848872742121,16.1511083151515,14.827438064291,14.5480162577607,13.7802434059033,11.1266301623578,7.69958864485907,0,0,7.14420435337007,6.08063677140237,3.53867111510348,14.9580882431969,6.21450920753212,20.7818994690755,14.5727674483554,15.2232739156071,17.7573932887165,16.1273225391306,14.6985883919631,19.2269884734403,24.2251068379686,7.08536848907567,3.5384422077995,12.4560474459505,8.83366073841574,6.78825354389311,11.1835056730873,52.4077626650669,48.801082687535,14.8165092020983,10.7833612055328,7.7987355029143,10.9280395282836,34.1522657842996,34.77004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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17254 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=G3UWA6,P10852 | |||
|association_with_transcript=81bp_to_ENSMUST00000170157,NM_001161413,uc008gmi.2_5end | |||
|cluster_id=chr19:8797656..8797777,- | |||
|description=CAGE_peak_2_at_Slc3a2_5end | |||
|id=chr19:8797656..8797777,- | |||
|ontology_enrichment_celltype=CL:0000540!9.29e-10!33;CL:0000047!9.29e-10!33;CL:0000031!9.29e-10!33;CL:0000404!9.29e-10!33;CL:0000117!1.09e-09!23;CL:0000337!1.09e-09!23;CL:0002319!1.18e-09!43;CL:0000221!2.49e-09!44;CL:0000133!2.49e-09!44;CL:0000055!6.44e-09!50;CL:0000393!1.54e-08!39;CL:0000211!1.54e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.29e-10,33;CL:0000047,9.29e-10,33;CL:0000031,9.29e-10,33;CL:0000404,9.29e-10,33;CL:0000117,1.09e-09,23;CL:0000337,1.09e-09,23;CL:0002319,1.18e-09,43;CL:0000221,2.49e-09,44;CL:0000133,2.49e-09,44;CL:0000393,1.54e-08,39;CL:0000211,1.54e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.23e-26!73;UBERON:0005743!1.23e-26!73;UBERON:0000073!1.80e-24!75;UBERON:0001016!1.80e-24!75;UBERON:0002346!1.99e-23!71;UBERON:0003075!1.99e-23!71;UBERON:0007284!1.99e-23!71;UBERON:0004121!4.05e-22!102;UBERON:0000924!4.05e-22!102;UBERON:0006601!4.05e-22!102;UBERON:0001049!5.20e-21!52;UBERON:0005068!5.20e-21!52;UBERON:0006241!5.20e-21!52;UBERON:0007135!5.20e-21!52;UBERON:0000955!4.55e-20!50;UBERON:0006238!4.55e-20!50;UBERON:0000033!6.63e-20!63;UBERON:0002616!1.70e-19!49;UBERON:0003056!7.41e-17!49;UBERON:0002020!2.31e-16!34;UBERON:0003080!1.72e-15!40;UBERON:0002780!5.51e-15!39;UBERON:0001890!5.51e-15!39;UBERON:0006240!5.51e-15!39;UBERON:0002791!8.92e-14!29;UBERON:0003528!8.92e-14!29;UBERON:0001893!8.92e-14!29;UBERON:0000956!5.08e-10!21;UBERON:0001869!5.08e-10!21;UBERON:0000203!5.08e-10!21;UBERON:0002619!3.59e-09!17;UBERON:0002021!4.14e-08!10;UBERON:0000411!4.14e-08!10;UBERON:0001950!4.14e-08!10;UBERON:0007811!1.36e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.23e-26,73;UBERON:0001016,1.80e-24,75;UBERON:0002346,4.81e-23,64;UBERON:0003075,4.81e-23,64;UBERON:0007284,4.81e-23,64;UBERON:0000073,2.89e-22,54;UBERON:0004121,2.93e-21,95;UBERON:0000924,2.93e-21,95;UBERON:0006601,2.93e-21,95;UBERON:0001049,5.20e-21,52;UBERON:0005068,5.20e-21,52;UBERON:0006241,5.20e-21,52;UBERON:0007135,5.20e-21,52;UBERON:0000955,2.59e-18,47;UBERON:0006238,2.59e-18,47;UBERON:0002616,9.40e-18,46;UBERON:0010371,2.55e-17,73;UBERON:0003056,7.41e-17,49;UBERON:0002020,2.31e-16,34;UBERON:0003080,1.72e-15,40;UBERON:0002780,5.51e-15,39;UBERON:0001890,5.51e-15,39;UBERON:0006240,5.51e-15,39;UBERON:0003528,8.92e-14,29;UBERON:0002791,8.92e-14,29;UBERON:0001893,8.92e-14,29;UBERON:0010314,6.90e-13,92;UBERON:0000956,5.08e-10,21;UBERON:0001869,5.08e-10,21;UBERON:0000203,5.08e-10,21;UBERON:0002619,3.59e-09,17;UBERON:0002021,4.14e-08,10;UBERON:0000411,4.14e-08,10;UBERON:0001950,4.14e-08,10 | |||
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| |||
|short_description=p2@Slc3a2 | |||
}} |
Latest revision as of 04:27, 26 September 2015
Short description: | p2@Slc3a2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Slc3a2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 81bp_to_ENSMUST00000170157, NM_001161413, uc008gmi.2_5end |
EntrezGene: | Slc3a2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.29e-10 | 33 |
neuronal stem cell | 9.29e-10 | 33 |
neuroblast | 9.29e-10 | 33 |
electrically signaling cell | 9.29e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.09e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-09 | 23 |
neural cell | 1.18e-09 | 43 |
ectodermal cell | 2.49e-09 | 44 |
neurectodermal cell | 2.49e-09 | 44 |
electrically responsive cell | 1.54e-08 | 39 |
electrically active cell | 1.54e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.23e-26 | 73 |
nervous system | 1.80e-24 | 75 |
neurectoderm | 4.81e-23 | 64 |
neural plate | 4.81e-23 | 64 |
presumptive neural plate | 4.81e-23 | 64 |
regional part of nervous system | 2.89e-22 | 54 |
ectoderm-derived structure | 2.93e-21 | 95 |
ectoderm | 2.93e-21 | 95 |
presumptive ectoderm | 2.93e-21 | 95 |
neural tube | 5.20e-21 | 52 |
neural rod | 5.20e-21 | 52 |
future spinal cord | 5.20e-21 | 52 |
neural keel | 5.20e-21 | 52 |
brain | 2.59e-18 | 47 |
future brain | 2.59e-18 | 47 |
regional part of brain | 9.40e-18 | 46 |
ecto-epithelium | 2.55e-17 | 73 |
pre-chordal neural plate | 7.41e-17 | 49 |
gray matter | 2.31e-16 | 34 |
anterior neural tube | 1.72e-15 | 40 |
regional part of forebrain | 5.51e-15 | 39 |
forebrain | 5.51e-15 | 39 |
future forebrain | 5.51e-15 | 39 |
brain grey matter | 8.92e-14 | 29 |
regional part of telencephalon | 8.92e-14 | 29 |
telencephalon | 8.92e-14 | 29 |
structure with developmental contribution from neural crest | 6.90e-13 | 92 |
cerebral cortex | 5.08e-10 | 21 |
cerebral hemisphere | 5.08e-10 | 21 |
pallium | 5.08e-10 | 21 |
regional part of cerebral cortex | 3.59e-09 | 17 |
occipital lobe | 4.14e-08 | 10 |
visual cortex | 4.14e-08 | 10 |
neocortex | 4.14e-08 | 10 |