FFCP PHASE1:Mm9::chr4:117556033..117556112,-: Difference between revisions
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{{FFCP|EntrezGene=53418|HGNC=|MCL_coexpression_id=398|UniProt=Q9Z2Y2,E9Q8H8,B1ASJ2|association_with_transcript=0bp_to_ENSMUST00000030266,ENSMUST00000167443,NM_001253381,NM_017377,NR_045570,uc008ujb.1,uc012dju.1_5end|description=CAGE_peak_1_at_B4galt2_5end|id=chr4:117556033..117556112,-|ontology_enrichment_celltype=CL:0000221!2.24e-13!44;CL:0000133!2.24e-13!44;CL:0002319!6.09e-13!43;CL:0000540!3.06e-12!33;CL:0000047!3.06e-12!33;CL:0000031!3.06e-12!33;CL:0000404!3.06e-12!33;CL:0000117!3.90e-12!23;CL:0000337!3.90e-12!23;CL:0000055!5.87e-11!50;CL:0000393!7.36e-11!39;CL:0000211!7.36e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.83e-13,44;CL:0000133,1.83e-13,44;CL:0002319,5.00e-13,43;CL:0000540,2.55e-12,33;CL:0000047,2.55e-12,33;CL:0000031,2.55e-12,33;CL:0000404,2.55e-12,33;CL:0000117,3.24e-12,23;CL:0000337,3.24e-12,23;CL:0000393,6.27e-11,39;CL:0000211,6.27e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.15e-23!73;UBERON:0005743!1.15e-23!73;UBERON:0000073!4.79e-23!75;UBERON:0001016!4.79e-23!75;UBERON:0004121!2.01e-19!102;UBERON:0000924!2.01e-19!102;UBERON:0006601!2.01e-19!102;UBERON:0001049!2.42e-18!52;UBERON:0005068!2.42e-18!52;UBERON:0006241!2.42e-18!52;UBERON:0007135!2.42e-18!52;UBERON:0002346!7.97e-18!71;UBERON:0003075!7.97e-18!71;UBERON:0007284!7.97e-18!71;UBERON:0002020!8.16e-18!34;UBERON:0000033!1.12e-16!63;UBERON:0000955!3.00e-16!50;UBERON:0006238!3.00e-16!50;UBERON:0003056!3.65e-16!49;UBERON:0002616!7.41e-16!49;UBERON:0002780!1.47e-15!39;UBERON:0001890!1.47e-15!39;UBERON:0006240!1.47e-15!39;UBERON:0003080!2.01e-15!40;UBERON:0002791!1.71e-14!29;UBERON:0003528!1.71e-14!29;UBERON:0001893!1.71e-14!29;UBERON:0000956!4.82e-11!21;UBERON:0001869!4.82e-11!21;UBERON:0000203!4.82e-11!21;UBERON:0002619!6.44e-09!17;UBERON:0000153!2.11e-08!94;UBERON:0002021!3.11e-07!10;UBERON:0000411!3.11e-07!10;UBERON:0001950!3.11e-07!10;UBERON:0007811!4.78e-07!86;UBERON:0000468!7.82e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.87e-24,73;UBERON:0001016,3.30e-23,75;UBERON:0004121,4.84e-20,95;UBERON:0000924,4.84e-20,95;UBERON:0006601,4.84e-20,95;UBERON:0000073,3.11e-19,54;UBERON:0002346,4.11e-19,64;UBERON:0003075,4.11e-19,64;UBERON:0007284,4.11e-19,64;UBERON:0001049,1.81e-18,52;UBERON:0005068,1.81e-18,52;UBERON:0006241,1.81e-18,52;UBERON:0007135,1.81e-18,52;UBERON:0002020,6.16e-18,34;UBERON:0010371,4.67e-17,73;UBERON:0003056,2.83e-16,49;UBERON:0000955,6.25e-16,47;UBERON:0006238,6.25e-16,47;UBERON:0002780,1.15e-15,39;UBERON:0001890,1.15e-15,39;UBERON:0006240,1.15e-15,39;UBERON:0002616,1.54e-15,46;UBERON:0003080,1.58e-15,40;UBERON:0010314,2.57e-15,92;UBERON:0003528,1.36e-14,29;UBERON:0002791,1.36e-14,29;UBERON:0001893,1.36e-14,29;UBERON:0000956,4.09e-11,21;UBERON:0001869,4.09e-11,21;UBERON:0000203,4.09e-11,21;UBERON:0002619,5.67e-09,17;UBERON:0002021,2.82e-07,10;UBERON:0000411,2.82e-07,10;UBERON:0001950,2.82e-07,10|phase1_expression=21.9403920533568,0,0.909998478779072,0,0,0.16787927191189,0.233612640595526,0,0,0.234064526321993,0.171217968225505,0.159544317990673,0,0,0,0.404950534779652,0,0.157731082679119,0,0,10.970584429488,0.297872853602656,0.261199789138935,0.319984845586813,0,0,0,0,0.190023419456374,0,0.886922042621219,2.54012269383853,6.76571266343027,15.8481681015439,0,0.831173226792462,0,0,0,0,0,0,0,7.30201544258348,7.29913904780505,9.17733760808408,39.119567217402,18.7501634487184,11.643367684927,10.1103547518627,13.4386964760348,20.125359011096,0,0,0,20.0662360108039,14.3266719969378,8.76642556871652,66.5621156228077,58.1890077199236,62.7493089471117,26.4298735013923,21.3430751066673,4.04954872776629,1.97773272513395,4.9733608046227,28.16241038873,38.0376122268339,35.3581577971909,30.5113420629621,34.9139435843294,58.8441027871835,52.566712746484,37.1147121621311,31.0539326099086,54.2339084099912,11.0115880999389,21.7068474744819,20.7368819895929,56.0516722853324,57.5457278259157,53.1331637967895,18.1468949350898,17.4456409109821,20.4749652020926,48.3190880176815,54.5283537460564,48.4638559145781,5.30083353332288,12.4693074176196,2.6087803983151,0,0.679971333707751,0.539703191637817,0,0.448026887097336,3.08977724289854,17.5543232255399,12.9893002301434,17.3136391510067,24.7884418806958,19.2489716121477,22.9324715735981,42.6640021891999,4.5463118612355,4.30711771307668,4.54972000513305,1.94112595522402,0,8.16431764856536,18.2159593104443,8.8294988710521,14.5287763271317,10.2491395575783,11.8764594207062,8.29399502775858,0.988779870937496,4.48258006451726,1.76922110389975,12.9413479957927,5.52103796150984,5.33362778448744,1.86391761218122,14.0534782565543,13.6140359428746,2.04365644166873,0.11981512450592,0,0.127070227073065,13.1815762676244,24.2475319493872,61.193669478965,44.4990259692228,42.9601968314955,14.7529511637288,20.2801578834697,25.5616803264294,5.47390670684409,1.51633655060205,5.47148825304832,17.6963802429277,22.0706020256134,24.3083875237221,18.2352829581215,16.4648327946213,15.1174189936123,22.113606996096,11.124244941777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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=53418 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z2Y2,E9Q8H8,B1ASJ2 | |||
|association_with_transcript=0bp_to_ENSMUST00000030266,ENSMUST00000167443,NM_001253381,NM_017377,NR_045570,uc008ujb.1,uc012dju.1_5end | |||
|cluster_id=chr4:117556033..117556112,- | |||
|description=CAGE_peak_1_at_B4galt2_5end | |||
|id=chr4:117556033..117556112,- | |||
|ontology_enrichment_celltype=CL:0000221!2.24e-13!44;CL:0000133!2.24e-13!44;CL:0002319!6.09e-13!43;CL:0000540!3.06e-12!33;CL:0000047!3.06e-12!33;CL:0000031!3.06e-12!33;CL:0000404!3.06e-12!33;CL:0000117!3.90e-12!23;CL:0000337!3.90e-12!23;CL:0000055!5.87e-11!50;CL:0000393!7.36e-11!39;CL:0000211!7.36e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.83e-13,44;CL:0000133,1.83e-13,44;CL:0002319,5.00e-13,43;CL:0000540,2.55e-12,33;CL:0000047,2.55e-12,33;CL:0000031,2.55e-12,33;CL:0000404,2.55e-12,33;CL:0000117,3.24e-12,23;CL:0000337,3.24e-12,23;CL:0000393,6.27e-11,39;CL:0000211,6.27e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-23!73;UBERON:0005743!1.15e-23!73;UBERON:0000073!4.79e-23!75;UBERON:0001016!4.79e-23!75;UBERON:0004121!2.01e-19!102;UBERON:0000924!2.01e-19!102;UBERON:0006601!2.01e-19!102;UBERON:0001049!2.42e-18!52;UBERON:0005068!2.42e-18!52;UBERON:0006241!2.42e-18!52;UBERON:0007135!2.42e-18!52;UBERON:0002346!7.97e-18!71;UBERON:0003075!7.97e-18!71;UBERON:0007284!7.97e-18!71;UBERON:0002020!8.16e-18!34;UBERON:0000033!1.12e-16!63;UBERON:0000955!3.00e-16!50;UBERON:0006238!3.00e-16!50;UBERON:0003056!3.65e-16!49;UBERON:0002616!7.41e-16!49;UBERON:0002780!1.47e-15!39;UBERON:0001890!1.47e-15!39;UBERON:0006240!1.47e-15!39;UBERON:0003080!2.01e-15!40;UBERON:0002791!1.71e-14!29;UBERON:0003528!1.71e-14!29;UBERON:0001893!1.71e-14!29;UBERON:0000956!4.82e-11!21;UBERON:0001869!4.82e-11!21;UBERON:0000203!4.82e-11!21;UBERON:0002619!6.44e-09!17;UBERON:0000153!2.11e-08!94;UBERON:0002021!3.11e-07!10;UBERON:0000411!3.11e-07!10;UBERON:0001950!3.11e-07!10;UBERON:0007811!4.78e-07!86;UBERON:0000468!7.82e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.87e-24,73;UBERON:0001016,3.30e-23,75;UBERON:0004121,4.84e-20,95;UBERON:0000924,4.84e-20,95;UBERON:0006601,4.84e-20,95;UBERON:0000073,3.11e-19,54;UBERON:0002346,4.11e-19,64;UBERON:0003075,4.11e-19,64;UBERON:0007284,4.11e-19,64;UBERON:0001049,1.81e-18,52;UBERON:0005068,1.81e-18,52;UBERON:0006241,1.81e-18,52;UBERON:0007135,1.81e-18,52;UBERON:0002020,6.16e-18,34;UBERON:0010371,4.67e-17,73;UBERON:0003056,2.83e-16,49;UBERON:0000955,6.25e-16,47;UBERON:0006238,6.25e-16,47;UBERON:0002780,1.15e-15,39;UBERON:0001890,1.15e-15,39;UBERON:0006240,1.15e-15,39;UBERON:0002616,1.54e-15,46;UBERON:0003080,1.58e-15,40;UBERON:0010314,2.57e-15,92;UBERON:0003528,1.36e-14,29;UBERON:0002791,1.36e-14,29;UBERON:0001893,1.36e-14,29;UBERON:0000956,4.09e-11,21;UBERON:0001869,4.09e-11,21;UBERON:0000203,4.09e-11,21;UBERON:0002619,5.67e-09,17;UBERON:0002021,2.82e-07,10;UBERON:0000411,2.82e-07,10;UBERON:0001950,2.82e-07,10 | |||
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| |||
|short_description=p1@B4galt2 | |||
}} |
Latest revision as of 05:47, 26 September 2015
Short description: | p1@B4galt2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_B4galt2_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 0bp_to_ENSMUST00000030266, ENSMUST00000167443, NM_001253381, NM_017377, NR_045570, uc008ujb.1, uc012dju.1_5end |
EntrezGene: | B4galt2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.83e-13 | 44 |
neurectodermal cell | 1.83e-13 | 44 |
neural cell | 5.00e-13 | 43 |
neuron | 2.55e-12 | 33 |
neuronal stem cell | 2.55e-12 | 33 |
neuroblast | 2.55e-12 | 33 |
electrically signaling cell | 2.55e-12 | 33 |
CNS neuron (sensu Vertebrata) | 3.24e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.24e-12 | 23 |
electrically responsive cell | 6.27e-11 | 39 |
electrically active cell | 6.27e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.87e-24 | 73 |
nervous system | 3.30e-23 | 75 |
ectoderm-derived structure | 4.84e-20 | 95 |
ectoderm | 4.84e-20 | 95 |
presumptive ectoderm | 4.84e-20 | 95 |
regional part of nervous system | 3.11e-19 | 54 |
neurectoderm | 4.11e-19 | 64 |
neural plate | 4.11e-19 | 64 |
presumptive neural plate | 4.11e-19 | 64 |
neural tube | 1.81e-18 | 52 |
neural rod | 1.81e-18 | 52 |
future spinal cord | 1.81e-18 | 52 |
neural keel | 1.81e-18 | 52 |
gray matter | 6.16e-18 | 34 |
ecto-epithelium | 4.67e-17 | 73 |
pre-chordal neural plate | 2.83e-16 | 49 |
brain | 6.25e-16 | 47 |
future brain | 6.25e-16 | 47 |
regional part of forebrain | 1.15e-15 | 39 |
forebrain | 1.15e-15 | 39 |
future forebrain | 1.15e-15 | 39 |
regional part of brain | 1.54e-15 | 46 |
anterior neural tube | 1.58e-15 | 40 |
structure with developmental contribution from neural crest | 2.57e-15 | 92 |
brain grey matter | 1.36e-14 | 29 |
regional part of telencephalon | 1.36e-14 | 29 |
telencephalon | 1.36e-14 | 29 |
cerebral cortex | 4.09e-11 | 21 |
cerebral hemisphere | 4.09e-11 | 21 |
pallium | 4.09e-11 | 21 |
regional part of cerebral cortex | 5.67e-09 | 17 |
occipital lobe | 2.82e-07 | 10 |
visual cortex | 2.82e-07 | 10 |
neocortex | 2.82e-07 | 10 |