FFCP PHASE1:Mm9::chr5:89012552..89012615,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:89012552..89012615,+
|short_description=p1@Rufy3
|description=CAGE_peak_1_at_Rufy3_5end
|association_with_transcript=0bp_to_ENSMUST00000031229,ENSMUST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=52822 | |EntrezGene=52822 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D394 | |UniProt=Q9D394 | ||
|association_with_transcript=0bp_to_ENSMUST00000031229,ENSMUST00000087029,NM_027530,uc008xzz.1,uc008yaa.1_5end | |||
|cluster_id=chr5:89012552..89012615,+ | |||
|description=CAGE_peak_1_at_Rufy3_5end | |||
|id=chr5:89012552..89012615,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.02e-15!33;CL:0000047!5.02e-15!33;CL:0000031!5.02e-15!33;CL:0000404!5.02e-15!33;CL:0000393!3.23e-14!39;CL:0000211!3.23e-14!39;CL:0000221!6.11e-13!44;CL:0000133!6.11e-13!44;CL:0002319!8.18e-13!43;CL:0000117!1.45e-12!23;CL:0000337!1.45e-12!23;CL:0000055!9.46e-12!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.50e-16,33;CL:0000047,3.50e-16,33;CL:0000031,3.50e-16,33;CL:0000404,3.50e-16,33;CL:0000393,2.64e-15,39;CL:0000211,2.64e-15,39;CL:0000221,1.08e-13,44;CL:0000133,1.08e-13,44;CL:0002319,1.48e-13,43;CL:0000117,1.65e-13,23;CL:0000337,1.65e-13,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.32e-32!102;UBERON:0000924!4.32e-32!102;UBERON:0006601!4.32e-32!102;UBERON:0000073!3.81e-31!75;UBERON:0001016!3.81e-31!75;UBERON:0001017!4.38e-31!73;UBERON:0005743!4.38e-31!73;UBERON:0002346!1.11e-30!71;UBERON:0003075!1.11e-30!71;UBERON:0007284!1.11e-30!71;UBERON:0000033!6.13e-27!63;UBERON:0001049!4.09e-24!52;UBERON:0005068!4.09e-24!52;UBERON:0006241!4.09e-24!52;UBERON:0007135!4.09e-24!52;UBERON:0000955!2.95e-23!50;UBERON:0006238!2.95e-23!50;UBERON:0003056!4.18e-23!49;UBERON:0002616!1.35e-22!49;UBERON:0003080!3.88e-19!40;UBERON:0002780!1.99e-18!39;UBERON:0001890!1.99e-18!39;UBERON:0006240!1.99e-18!39;UBERON:0002020!4.66e-18!34;UBERON:0002791!1.52e-15!29;UBERON:0003528!1.52e-15!29;UBERON:0001893!1.52e-15!29;UBERON:0007811!4.38e-12!86;UBERON:0000956!3.60e-11!21;UBERON:0001869!3.60e-11!21;UBERON:0000203!3.60e-11!21;UBERON:0000153!8.40e-10!94;UBERON:0002619!3.00e-09!17;UBERON:0000468!1.44e-08!333;UBERON:0002021!1.19e-07!10;UBERON:0000411!1.19e-07!10;UBERON:0001950!1.19e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.08e-33,75;UBERON:0001017,2.43e-33,73;UBERON:0002346,2.33e-32,64;UBERON:0003075,2.33e-32,64;UBERON:0007284,2.33e-32,64;UBERON:0004121,1.04e-30,95;UBERON:0000924,1.04e-30,95;UBERON:0006601,1.04e-30,95;UBERON:0000073,1.29e-27,54;UBERON:0001049,2.78e-26,52;UBERON:0005068,2.78e-26,52;UBERON:0006241,2.78e-26,52;UBERON:0007135,2.78e-26,52;UBERON:0010371,4.43e-26,73;UBERON:0003056,5.84e-25,49;UBERON:0010314,3.97e-24,92;UBERON:0000955,3.18e-23,47;UBERON:0006238,3.18e-23,47;UBERON:0002616,1.62e-22,46;UBERON:0003080,1.20e-20,40;UBERON:0002780,7.07e-20,39;UBERON:0001890,7.07e-20,39;UBERON:0006240,7.07e-20,39;UBERON:0002020,1.78e-19,34;UBERON:0003528,9.55e-17,29;UBERON:0002791,9.55e-17,29;UBERON:0001893,9.55e-17,29;UBERON:0000956,5.40e-12,21;UBERON:0001869,5.40e-12,21;UBERON:0000203,5.40e-12,21;UBERON:0002619,6.55e-10,17;UBERON:0002021,3.56e-08,10;UBERON:0000411,3.56e-08,10;UBERON:0001950,3.56e-08,10 | |||
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| ||
|short_description=p1@Rufy3 | |||
}} | }} |
Latest revision as of 07:30, 26 September 2015
Short description: | p1@Rufy3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rufy3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000031229, ENSMUST00000087029, NM_027530, uc008xzz.1, uc008yaa.1_5end |
EntrezGene: | Rufy3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.50e-16 | 33 |
neuronal stem cell | 3.50e-16 | 33 |
neuroblast | 3.50e-16 | 33 |
electrically signaling cell | 3.50e-16 | 33 |
electrically responsive cell | 2.64e-15 | 39 |
electrically active cell | 2.64e-15 | 39 |
ectodermal cell | 1.08e-13 | 44 |
neurectodermal cell | 1.08e-13 | 44 |
neural cell | 1.48e-13 | 43 |
CNS neuron (sensu Vertebrata) | 1.65e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.65e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.08e-33 | 75 |
central nervous system | 2.43e-33 | 73 |
neurectoderm | 2.33e-32 | 64 |
neural plate | 2.33e-32 | 64 |
presumptive neural plate | 2.33e-32 | 64 |
ectoderm-derived structure | 1.04e-30 | 95 |
ectoderm | 1.04e-30 | 95 |
presumptive ectoderm | 1.04e-30 | 95 |
regional part of nervous system | 1.29e-27 | 54 |
neural tube | 2.78e-26 | 52 |
neural rod | 2.78e-26 | 52 |
future spinal cord | 2.78e-26 | 52 |
neural keel | 2.78e-26 | 52 |
ecto-epithelium | 4.43e-26 | 73 |
pre-chordal neural plate | 5.84e-25 | 49 |
structure with developmental contribution from neural crest | 3.97e-24 | 92 |
brain | 3.18e-23 | 47 |
future brain | 3.18e-23 | 47 |
regional part of brain | 1.62e-22 | 46 |
anterior neural tube | 1.20e-20 | 40 |
regional part of forebrain | 7.07e-20 | 39 |
forebrain | 7.07e-20 | 39 |
future forebrain | 7.07e-20 | 39 |
gray matter | 1.78e-19 | 34 |
brain grey matter | 9.55e-17 | 29 |
regional part of telencephalon | 9.55e-17 | 29 |
telencephalon | 9.55e-17 | 29 |
cerebral cortex | 5.40e-12 | 21 |
cerebral hemisphere | 5.40e-12 | 21 |
pallium | 5.40e-12 | 21 |
regional part of cerebral cortex | 6.55e-10 | 17 |
occipital lobe | 3.56e-08 | 10 |
visual cortex | 3.56e-08 | 10 |
neocortex | 3.56e-08 | 10 |