FFCP PHASE1:Mm9::chr10:80755706..80755750,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr10:80755706..80755750,+ to FFCP PHASE1:Mm9::chr10:80755706..80755750,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=18717 | |EntrezGene=18717 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=F8WHW6,O70161,E0CZ71,E0CYP4 | |UniProt=F8WHW6,O70161,E0CZ71,E0CYP4 | ||
|association_with_transcript=0bp_to_ENSMUST00000045469,ENSMUST00000105327,ENSMUST00000160291,ENSMUST00000161854,ENSMUST00000163075,NM_001146687,NM_008844,uc007ghc.2,uc007ghd.2,uc007ghe.2,uc011xjf.1_5end | |||
|cluster_id=chr10:80755706..80755750,+ | |||
|description=CAGE_peak_1_at_Pip5k1c_5end | |||
|id=chr10:80755706..80755750,+ | |||
|ontology_enrichment_celltype=CL:0000117!7.60e-12!23;CL:0000337!7.60e-12!23;CL:0000540!3.63e-09!33;CL:0000047!3.63e-09!33;CL:0000031!3.63e-09!33;CL:0000404!3.63e-09!33;CL:0000393!4.68e-09!39;CL:0000211!4.68e-09!39;CL:0002319!2.08e-07!43;CL:0000055!2.66e-07!50;CL:0000221!3.26e-07!44;CL:0000133!3.26e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.60e-12,23;CL:0000337,7.60e-12,23;CL:0000540,3.63e-09,33;CL:0000047,3.63e-09,33;CL:0000031,3.63e-09,33;CL:0000404,3.63e-09,33;CL:0000393,4.68e-09,39;CL:0000211,4.68e-09,39;CL:0002319,2.08e-07,43;CL:0000221,3.26e-07,44;CL:0000133,3.26e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.22e-23!73;UBERON:0005743!2.22e-23!73;UBERON:0000073!2.74e-22!75;UBERON:0001016!2.74e-22!75;UBERON:0001049!9.23e-22!52;UBERON:0005068!9.23e-22!52;UBERON:0006241!9.23e-22!52;UBERON:0007135!9.23e-22!52;UBERON:0000955!1.34e-20!50;UBERON:0006238!1.34e-20!50;UBERON:0002616!5.99e-20!49;UBERON:0002020!1.36e-16!34;UBERON:0000033!1.88e-16!63;UBERON:0003080!2.03e-16!40;UBERON:0002780!5.99e-16!39;UBERON:0001890!5.99e-16!39;UBERON:0006240!5.99e-16!39;UBERON:0007811!1.31e-15!86;UBERON:0002346!3.80e-15!71;UBERON:0003075!3.80e-15!71;UBERON:0007284!3.80e-15!71;UBERON:0003056!2.44e-14!49;UBERON:0002791!8.92e-14!29;UBERON:0003528!8.92e-14!29;UBERON:0001893!8.92e-14!29;UBERON:0000153!1.23e-13!94;UBERON:0004121!2.04e-13!102;UBERON:0000924!2.04e-13!102;UBERON:0006601!2.04e-13!102;UBERON:0000956!6.44e-10!21;UBERON:0001869!6.44e-10!21;UBERON:0000203!6.44e-10!21;UBERON:0002619!3.61e-08!17;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.22e-23,73;UBERON:0000073,5.91e-23,54;UBERON:0001016,2.74e-22,75;UBERON:0001049,9.23e-22,52;UBERON:0005068,9.23e-22,52;UBERON:0006241,9.23e-22,52;UBERON:0007135,9.23e-22,52;UBERON:0002346,3.63e-19,64;UBERON:0003075,3.63e-19,64;UBERON:0007284,3.63e-19,64;UBERON:0000955,6.27e-19,47;UBERON:0006238,6.27e-19,47;UBERON:0002616,2.73e-18,46;UBERON:0002020,1.36e-16,34;UBERON:0003080,2.03e-16,40;UBERON:0004121,2.96e-16,95;UBERON:0000924,2.96e-16,95;UBERON:0006601,2.96e-16,95;UBERON:0002780,5.99e-16,39;UBERON:0001890,5.99e-16,39;UBERON:0006240,5.99e-16,39;UBERON:0010371,3.49e-15,73;UBERON:0003056,2.44e-14,49;UBERON:0003528,8.92e-14,29;UBERON:0002791,8.92e-14,29;UBERON:0001893,8.92e-14,29;UBERON:0000956,6.44e-10,21;UBERON:0001869,6.44e-10,21;UBERON:0000203,6.44e-10,21;UBERON:0010314,1.21e-09,92;UBERON:0002619,3.61e-08,17;UBERON:0002021,5.08e-08,10;UBERON:0000411,5.08e-08,10;UBERON:0001950,5.08e-08,10 | |||
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| |phase1_expression=41.6387002472464,21.287499866001,19.1099680543605,22.9872800593191,29.0519523368881,19.4739955417792,20.0906870912152,53.0696859344878,25.9051248759067,24.5767752638093,13.0125655851384,14.8376215731326,41.601777373283,49.8296293788285,15.9892685671518,20.6524772737622,23.0855419782288,51.1048707880345,43.3281610194135,38.1950686618227,50.2605844792822,38.2270162123408,25.0751797573378,19.0390983124154,21.564472420314,11.4846392823004,12.4920978886132,16.1603424514417,15.0118501370535,14.1136872665561,13.7472916606289,24.131165591466,18.4519436275371,15.8481681015439,22.2415747208481,16.2909952451323,23.8878146826972,76.1727567941172,40.6294379152376,36.1231383341921,61.1760747552255,91.5280949844317,51.9496077743334,41.0423626600382,43.8962112180498,34.1396959020728,84.4982651895882,25.9449936092731,32.9529274101708,19.4429899074283,32.3368633954587,31.6255641602937,62.0795642413625,57.3036092188962,57.8081334525038,32.6719483765653,50.4298854292212,35.5813743671435,88.4122933956442,89.9284664762456,88.1025650873589,58.6201040479598,44.464739805557,137.234706885413,162.174083460984,158.43706563298,71.9040265244171,69.5435132632014,72.5827286159344,76.4133610957369,71.3001618981185,144.253747123921,125.674199801468,69.207301556449,72.8425579738596,76.2951592886317,86.9915459895171,104.958991906024,92.3175264870023,96.4088763307717,90.5727671663856,86.9925328829789,85.9883636924253,65.8432253737066,80.9830713217094,122.565491557046,100.941521686564,84.4389489588612,22.0363222599566,35.0652038895485,80.8721923477681,30.9752595713299,4.0798280022465,21.0484244738749,18.8435161059824,16.1289679355041,27.2462175055599,39.1989741929533,35.3308966259901,34.6272783020133,32.3939865486365,51.3305909657271,122.30651505919,241.762679072133,11.2575341325831,9.37431502257865,10.1104889002957,24.5495341395979,21.4918443427153,24.6413950847609,34.6970653532272,25.2706346999077,25.1370892009104,22.759118723446,29.3971767839262,23.8766523526383,72.9225154816403,22.4129003225863,25.6537060065464,31.5445357397448,34.6721183982818,25.2135131630315,14.9113408974498,165.713931108536,197.927137938715,22.480220858356,48.2854951758859,25.1959147017231,39.1376299385039,82.0852703938428,105.682639251103,116.481584408625,210.675076073039,254.436880043679,81.4529134673476,109.026128781533,49.1884127397028,37.6953120948582,34.1175723885461,26.7261156975822,28.3662565658694,27.5882525320167,30.7906241967147,31.6480117455002,49.19038888641,49.451896029952,46.1949502079463,51.2232674063251,46.7782544664268,33.6608822698718,38.7092473160687,32.6601641317086,25.3022996795294,30.9944428204728,21.812906459242,33.2387225586884,28.7907406798426,20.3304846620625,32.6788024304931,28.1691050648283,27.6740750777694,21.2473232523998,32.670773510759,24.5955289684255,24.3742038362058,21.6256568617879,25.2176997315642,27.2063247715505,34.7221283317444,26.7592966448925,35.1838633429014,28.8013975227905,31.8347667172023,36.9067651591022,141.945715280786,109.799221408696,16.1905203662061,15.3381328664856,32.4198140813556,37.8545775132515,33.5055399437443,24.0003394301778,23.3496946037114,30.626325804122,33.2170343081158,42.3276313640708,47.7536896720512,53.3203345070284,48.74102177978,22.4704852163555,19.6685625385972,29.4729084416463,35.0885616763201,30.3901043541879,25.9227792048085,30.9550018324878,31.2263504339877,42.6425784933137,48.8186066599266,42.2165023221662,37.2086984984058,47.3845109459714,23.4197575398848,19.3540322630669,18.4765455406411,22.2613491261005,20.0831520174618,23.8765388154893,20.3700681425136,23.5910832709665,21.4018499343047,21.4157902286704,15.814502718009,33.1205443424968,35.2602570619453,33.0878330110716,24.3980482389801,30.8763853672555,43.7865060694853,32.9715056480644,29.6596257124487,29.5356449248827,22.9996443322732,31.9936951713868,38.3250261826482,51.9055503301745,49.9703406816625,49.6080904813256,55.4902594928055,44.0792316585335,47.4883700131213,61.7651480143054,90.4747703635634,62.5491536391516,28.0305635620851,23.730560182207,74.6560243443233,82.1653923011344,27.7050057686581,35.850871663021,33.128363038707,33.5777320095109,41.3612923646974,25.5696613809231,31.1918143715352,32.2707245099269,37.2425845540903,36.2397263810027,37.5523389049197,160.981979527325,26.400855848738,45.2286633314828,49.5176356434871,34.6437258242324,37.1686387351896,28.1625537939778,22.9765903293211,16.7858520982749,28.9395855023157,20.2907197642992,41.6069552000836,37.0804404067056,22.4593348382374,28.4433082142234,23.1920938864997,33.0033738394198,66.0452835162349,34.3916689599803,46.0516914266606,42.2243959012237,42.5616560741457,53.3322764630191,51.0101963866575,70.0269382963578,40.5982054950219,33.045803054756,19.1859706307817,26.0520279647538,31.0011699256139,27.9851971666643,28.1718731847402,26.0984030594647,26.5247561333164,85.2956389248344,23.7510524309015,40.6582129887548,31.6682641802207,23.169320211577,23.5114071680163,31.8001660757066,76.1503366372472,65.2173767828246,76.5627854876508,30.5494597764836,37.169479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| ||
|short_description=p1@Pip5k1c | |||
}} | }} |
Latest revision as of 10:57, 26 September 2015
Short description: | p1@Pip5k1c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pip5k1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000045469, ENSMUST00000105327, ENSMUST00000160291, ENSMUST00000161854, ENSMUST00000163075, NM_001146687, NM_008844, uc007ghc.2, uc007ghd.2, uc007ghe.2, uc011xjf.1_5end |
EntrezGene: | Pip5k1c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.60e-12 | 23 |
neuroblast (sensu Vertebrata) | 7.60e-12 | 23 |
neuron | 3.63e-09 | 33 |
neuronal stem cell | 3.63e-09 | 33 |
neuroblast | 3.63e-09 | 33 |
electrically signaling cell | 3.63e-09 | 33 |
electrically responsive cell | 4.68e-09 | 39 |
electrically active cell | 4.68e-09 | 39 |
neural cell | 2.08e-07 | 43 |
ectodermal cell | 3.26e-07 | 44 |
neurectodermal cell | 3.26e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.22e-23 | 73 |
regional part of nervous system | 5.91e-23 | 54 |
nervous system | 2.74e-22 | 75 |
neural tube | 9.23e-22 | 52 |
neural rod | 9.23e-22 | 52 |
future spinal cord | 9.23e-22 | 52 |
neural keel | 9.23e-22 | 52 |
neurectoderm | 3.63e-19 | 64 |
neural plate | 3.63e-19 | 64 |
presumptive neural plate | 3.63e-19 | 64 |
brain | 6.27e-19 | 47 |
future brain | 6.27e-19 | 47 |
regional part of brain | 2.73e-18 | 46 |
gray matter | 1.36e-16 | 34 |
anterior neural tube | 2.03e-16 | 40 |
ectoderm-derived structure | 2.96e-16 | 95 |
ectoderm | 2.96e-16 | 95 |
presumptive ectoderm | 2.96e-16 | 95 |
regional part of forebrain | 5.99e-16 | 39 |
forebrain | 5.99e-16 | 39 |
future forebrain | 5.99e-16 | 39 |
ecto-epithelium | 3.49e-15 | 73 |
pre-chordal neural plate | 2.44e-14 | 49 |
brain grey matter | 8.92e-14 | 29 |
regional part of telencephalon | 8.92e-14 | 29 |
telencephalon | 8.92e-14 | 29 |
cerebral cortex | 6.44e-10 | 21 |
cerebral hemisphere | 6.44e-10 | 21 |
pallium | 6.44e-10 | 21 |
structure with developmental contribution from neural crest | 1.21e-09 | 92 |
regional part of cerebral cortex | 3.61e-08 | 17 |
occipital lobe | 5.08e-08 | 10 |
visual cortex | 5.08e-08 | 10 |
neocortex | 5.08e-08 | 10 |