FFCP PHASE1:Mm9::chr1:165709725..165709762,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16579 | |EntrezGene=16579 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=P70188 | |UniProt=P70188 | ||
|association_with_transcript=11bp_to_ENSMUST00000027877,ENSMUST00000077642_5end | |association_with_transcript=11bp_to_ENSMUST00000027877,ENSMUST00000077642_5end | ||
|cluster_id=chr1:165709725..165709762,+ | |||
|description=CAGE_peak_3_at_Kifap3_5end | |description=CAGE_peak_3_at_Kifap3_5end | ||
|id=chr1:165709725..165709762,+ | |id=chr1:165709725..165709762,+ | ||
|ontology_enrichment_celltype=CL:0000117!5.61e-14!23;CL:0000337!5.61e-14!23;CL:0000540!1.52e-09!33;CL:0000047!1.52e-09!33;CL:0000031!1.52e-09!33;CL:0000404!1.52e-09!33;CL:0000393!8.02e-08!39;CL:0000211!8.02e-08!39;CL:0000221!2.62e-07!44;CL:0000133!2.62e-07!44;CL:0002319!3.01e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.02e-15,23;CL:0000337,4.02e-15,23;CL:0000540,2.01e-09,33;CL:0000047,2.01e-09,33;CL:0000031,2.01e-09,33;CL:0000404,2.01e-09,33;CL:0000393,2.35e-07,39;CL:0000211,2.35e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.85e-20!52;UBERON:0005068!4.85e-20!52;UBERON:0006241!4.85e-20!52;UBERON:0007135!4.85e-20!52;UBERON:0001017!2.97e-19!73;UBERON:0005743!2.97e-19!73;UBERON:0000033!5.27e-19!63;UBERON:0000073!7.38e-19!75;UBERON:0001016!7.38e-19!75;UBERON:0000955!7.38e-19!50;UBERON:0006238!7.38e-19!50;UBERON:0002616!2.55e-18!49;UBERON:0002020!4.67e-18!34;UBERON:0002346!7.27e-18!71;UBERON:0003075!7.27e-18!71;UBERON:0007284!7.27e-18!71;UBERON:0003056!8.14e-17!49;UBERON:0004121!3.78e-16!102;UBERON:0000924!3.78e-16!102;UBERON:0006601!3.78e-16!102;UBERON:0003080!4.68e-15!40;UBERON:0002791!5.71e-15!29;UBERON:0003528!5.71e-15!29;UBERON:0001893!5.71e-15!29;UBERON:0002780!1.93e-14!39;UBERON:0001890!1.93e-14!39;UBERON:0006240!1.93e-14!39;UBERON:0000153!3.10e-11!94;UBERON:0007811!6.63e-11!86;UBERON:0000956!2.12e-10!21;UBERON:0001869!2.12e-10!21;UBERON:0000203!2.12e-10!21;UBERON:0002619!1.74e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.27e-23,54;UBERON:0001049,8.48e-22,52;UBERON:0005068,8.48e-22,52;UBERON:0006241,8.48e-22,52;UBERON:0007135,8.48e-22,52;UBERON:0002346,4.00e-21,64;UBERON:0003075,4.00e-21,64;UBERON:0007284,4.00e-21,64;UBERON:0002020,1.40e-19,34;UBERON:0001017,2.57e-19,73;UBERON:0010371,1.02e-18,73;UBERON:0001016,1.20e-18,75;UBERON:0000955,2.57e-18,47;UBERON:0006238,2.57e-18,47;UBERON:0003056,4.05e-18,49;UBERON:0002616,9.60e-18,46;UBERON:0004121,2.42e-17,95;UBERON:0000924,2.42e-17,95;UBERON:0006601,2.42e-17,95;UBERON:0003080,2.06e-16,40;UBERON:0003528,3.31e-16,29;UBERON:0002791,3.31e-16,29;UBERON:0001893,3.31e-16,29;UBERON:0002780,9.70e-16,39;UBERON:0001890,9.70e-16,39;UBERON:0006240,9.70e-16,39;UBERON:0010314,1.17e-14,92;UBERON:0000956,3.25e-11,21;UBERON:0001869,3.25e-11,21;UBERON:0000203,3.25e-11,21;UBERON:0002619,3.99e-09,17;UBERON:0002021,3.34e-07,10;UBERON:0000411,3.34e-07,10;UBERON:0001950,3.34e-07,10 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0.467225281191051,0.129123323441576,0,0,0.171217968225505,0.0797721589953364,0,0.174840804837995,0,0,0,0.315462165358238,0.548457734422955,0,7.73893940374735,0.297872853602656,0.522399578277871,0,0.22940928106717,0.57423196411502,0,0,0.190023419456374,0,0.221730510655305,0.635030673459631,0,0,0.288851619751275,0.664938581433969,0.204169356262369,0,0,0,0,0,0.485510353031154,1.00717454380462,1.01376931219515,1.10128051297009,1.56478268869608,0.436050312760893,1.5378032791413,1.36100929351998,0.979904951377538,1.43752564364972,0.167782606057736,0,0,0.771778308107841,0.573066879877513,1.03134418455488,16.9945827122062,13.7537654610729,8.23980824558033,2.03306719241479,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,7.46565208621039,6.75029691658453,8.41299845405528,13.7112472513826,12.589506834242,8.57435594504678,7.28425579738596,13.7882817991503,15.4162233399144,20.42997409363,18.5863905240055,13.0567424852892,16.2848005612289,14.0646610050325,16.1926139420801,14.6318278608237,12.6822545654752,19.1508580557884,16.2303716110977,15.8439528951505,0.757261933331841,1.73814588245607,0.579728977403356,0,0,0,0,0.448026887097336,2.24711072210803,0.852151612890289,1.55871602761721,1.41335829804136,1.97180787687353,0,0,0,0.649473123033642,0.506719730950197,1.01104889002957,0.79928715803342,0.517875767294343,0.593768556259299,2.25530924795977,1.21786191324856,0.691846491768175,0.904335843315735,1.52865319276416,0.376999773989026,0.247194967734374,0.722996784599558,0,1.45590164952668,0.883366073841574,0.969750506270444,0,4.68449275218475,5.86450779077674,0.255457055208591,0.718890747035522,0,0.762421362438388,15.8778077769112,5.49000723382352,21.3612398591869,16.5133104182663,11.5071955798649,11.4283424507758,12.8170597823529,2.74966282395854,0.995255764880744,0.758168275301024,0.631325567659422,2.21204753036596,3.90833577536904,4.32149111532838,5.27466862425003,4.42237244483631,4.86832137082429,5.43470002446427,2.32833033665114,2.15567992932842,3.02569728268511,3.69497360744293,5.04150184583422,1.11218899690239,1.0447564995665,1.02891068203972,3.58261680273288,0.702213187313235,0.257347907114715,0.568326998791185,2.89976081549703,2.81431271977315,1.98068267607116,3.07768156260773,2.75469924446365,2.93107514486019,1.86027155800326,0.536546802799238,2.33530684734339,1.48103864922132,0.985004784474571,0.56748166682099,1.02339991197733,0.658650345873152,0.805238512562231,11.1453672738987,14.3037411207205,0,0.264450566663544,1.91959425481711,2.78684006232526,1.80414445850931,1.00841762311671,0.889512175379481,0.570676878337677,0.474529061544512,0.988193728344065,0.754005626400808,0.397912944082302,0.58489226135736,0.898819408654221,0.216138049874694,0.199141273254367,0.948339504765408,1.71372768914593,3.38123207019241,2.64746726198909,1.55161989734101,2.45475369616115,1.51767689098217,1.77132177575523,0.784993639206874,0.616985819609003,0,0.500535317148282,0.589676985339609,0.224862112384854,0,0,1.2731292589071,0.287696137450811,0.324270453550071,0,0,0,0,0,0.179397413521912,0,0.369506380333209,3.22135400009824,2.28150967018836,1.35796068620151,0.704070744865506,1.00503754465089,0.714130922658041,0.975668239288994,1.10344600874334,2.43611158613652,1.43509291791738,0.327726629431476,0.863424909329478,0.289298117163023,0,0,0,0.275936746304732,16.8578119487182,19.2227166011213,2.45902418065013,0,0.631016438832513,0.390438744296638,0.646270193198397,1.43381278771531,0.891194696329576,0.566153061577665,1.21443210502468,1.46127928955656,1.97643888973262,11.8888887076069,0.99358059645788,2.49291845134157,3.58351310577867,1.31976098378028,0,2.18502572539483,0.906970670894253,1.32023555829129,0.885905678642318,0.922305443831782,1.55056975900933,1.09060118843252,0.356497378384721,0,0,0,0,1.62054984628179,1.94038025674132,2.7863814554107,2.30542303734956,3.74574516964348,3.1264313914403,0.608929898229199,1.87737366450968,1.48282449604674,1.32317038832977,1.48397627647332,0.968786560175433,1.38719727334758,1.55184047204077,1.96969079694074,0,15.3903000668723,0.512612642393558,1.65109494370578,0.740778109478847,0,0.27338845544205,0,0.679913719975421,0.279902904647316,0.138199973804424,0,3.16335993581135,1.42323626988794,1.18805874903981,1.88179466413022,0.436725127492355,1.75323650300267,0.661227645802687,0.26175594198403,0.648074866458964,0,28.7483398728937,3.28936401296753,2.81279433777066,3.11121901350476,1.93739735216597,2.36538575687089,1.5256441023948,2.0832701575032,1.99232754408851,18.8435614244285,19.0099804130191,0.948033361884535,2.02725215290164,2.56777392912068,1.03936658382236,1.07416017400489,1.39076948346885,1.32214994471966,1.62458479892035,0.504832249740738,1.21930890648,1.31074040677893,1.55932609183604,0.769694733122636,1.5193997283604,0.453460767230423,0.665957860122194,1.16628013592318,1.51096154727671,1.15913756419314,1.31377732815827,0.73260649706906,0.428736758158132,1.00314420807073,9.60078132449013,16.5717085142584,9.73922372846974,12.2015759464018,14.3867329151835,15.8632718451837,14.8504950050997,11.7083512838297,12.6879874515577,13.9795284172991,3.32119512269365,1.99512436700516,4.60980735536162,2.43106717068294,3.14419743941973,4.96377472815038,3.33370091702423,3.5025959730612,1.92551525755089,5.55933865880354,4.56262739802432,3.9611531691076,3.27745276144588,4.8018864303652,4.59483751644906,6.66811167796303,5.33067899346335,3.27945674788299,5.76920261124629,4.12156976376312,2.05721551431249,2.8396128985494,4.05341522910446,2.90692833264657,4.6113596403512,3.63842813934209,4.024415403201,3.41990624869196,3.93831930152999,2.80571135828869,3.08451047122853,4.72821515402705,4.09231043169689,3.71848418846318,3.08650577569826,4.49659040288303,2.33931608445408,2.79332370262788,2.67803664896381,3.97064554415128,1.62307484934295 | |phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0.467225281191051,0.129123323441576,0,0,0.171217968225505,0.0797721589953364,0,0.174840804837995,0,0,0,0.315462165358238,0.548457734422955,0,7.73893940374735,0.297872853602656,0.522399578277871,0,0.22940928106717,0.57423196411502,0,0,0.190023419456374,0,0.221730510655305,0.635030673459631,0,0,0.288851619751275,0.664938581433969,0.204169356262369,0,0,0,0,0,0.485510353031154,1.00717454380462,1.01376931219515,1.10128051297009,1.56478268869608,0.436050312760893,1.5378032791413,1.36100929351998,0.979904951377538,1.43752564364972,0.167782606057736,0,0,0.771778308107841,0.573066879877513,1.03134418455488,16.9945827122062,13.7537654610729,8.23980824558033,2.03306719241479,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,7.46565208621039,6.75029691658453,8.41299845405528,13.7112472513826,12.589506834242,8.57435594504678,7.28425579738596,13.7882817991503,15.4162233399144,20.42997409363,18.5863905240055,13.0567424852892,16.2848005612289,14.0646610050325,16.1926139420801,14.6318278608237,12.6822545654752,19.1508580557884,16.2303716110977,15.8439528951505,0.757261933331841,1.73814588245607,0.579728977403356,0,0,0,0,0.448026887097336,2.24711072210803,0.852151612890289,1.55871602761721,1.41335829804136,1.97180787687353,0,0,0,0.649473123033642,0.506719730950197,1.01104889002957,0.79928715803342,0.517875767294343,0.593768556259299,2.25530924795977,1.21786191324856,0.691846491768175,0.904335843315735,1.52865319276416,0.376999773989026,0.247194967734374,0.722996784599558,0,1.45590164952668,0.883366073841574,0.969750506270444,0,4.68449275218475,5.86450779077674,0.255457055208591,0.718890747035522,0,0.762421362438388,15.8778077769112,5.49000723382352,21.3612398591869,16.5133104182663,11.5071955798649,11.4283424507758,12.8170597823529,2.74966282395854,0.995255764880744,0.758168275301024,0.631325567659422,2.21204753036596,3.90833577536904,4.32149111532838,5.27466862425003,4.42237244483631,4.86832137082429,5.43470002446427,2.32833033665114,2.15567992932842,3.02569728268511,3.69497360744293,5.04150184583422,1.11218899690239,1.0447564995665,1.02891068203972,3.58261680273288,0.702213187313235,0.257347907114715,0.568326998791185,2.89976081549703,2.81431271977315,1.98068267607116,3.07768156260773,2.75469924446365,2.93107514486019,1.86027155800326,0.536546802799238,2.33530684734339,1.48103864922132,0.985004784474571,0.56748166682099,1.02339991197733,0.658650345873152,0.805238512562231,11.1453672738987,14.3037411207205,0,0.264450566663544,1.91959425481711,2.78684006232526,1.80414445850931,1.00841762311671,0.889512175379481,0.570676878337677,0.474529061544512,0.988193728344065,0.754005626400808,0.397912944082302,0.58489226135736,0.898819408654221,0.216138049874694,0.199141273254367,0.948339504765408,1.71372768914593,3.38123207019241,2.64746726198909,1.55161989734101,2.45475369616115,1.51767689098217,1.77132177575523,0.784993639206874,0.616985819609003,0,0.500535317148282,0.589676985339609,0.224862112384854,0,0,1.2731292589071,0.287696137450811,0.324270453550071,0,0,0,0,0,0.179397413521912,0,0.369506380333209,3.22135400009824,2.28150967018836,1.35796068620151,0.704070744865506,1.00503754465089,0.714130922658041,0.975668239288994,1.10344600874334,2.43611158613652,1.43509291791738,0.327726629431476,0.863424909329478,0.289298117163023,0,0,0,0.275936746304732,16.8578119487182,19.2227166011213,2.45902418065013,0,0.631016438832513,0.390438744296638,0.646270193198397,1.43381278771531,0.891194696329576,0.566153061577665,1.21443210502468,1.46127928955656,1.97643888973262,11.8888887076069,0.99358059645788,2.49291845134157,3.58351310577867,1.31976098378028,0,2.18502572539483,0.906970670894253,1.32023555829129,0.885905678642318,0.922305443831782,1.55056975900933,1.09060118843252,0.356497378384721,0,0,0,0,1.62054984628179,1.94038025674132,2.7863814554107,2.30542303734956,3.74574516964348,3.1264313914403,0.608929898229199,1.87737366450968,1.48282449604674,1.32317038832977,1.48397627647332,0.968786560175433,1.38719727334758,1.55184047204077,1.96969079694074,0,15.3903000668723,0.512612642393558,1.65109494370578,0.740778109478847,0,0.27338845544205,0,0.679913719975421,0.279902904647316,0.138199973804424,0,3.16335993581135,1.42323626988794,1.18805874903981,1.88179466413022,0.436725127492355,1.75323650300267,0.661227645802687,0.26175594198403,0.648074866458964,0,28.7483398728937,3.28936401296753,2.81279433777066,3.11121901350476,1.93739735216597,2.36538575687089,1.5256441023948,2.0832701575032,1.99232754408851,18.8435614244285,19.0099804130191,0.948033361884535,2.02725215290164,2.56777392912068,1.03936658382236,1.07416017400489,1.39076948346885,1.32214994471966,1.62458479892035,0.504832249740738,1.21930890648,1.31074040677893,1.55932609183604,0.769694733122636,1.5193997283604,0.453460767230423,0.665957860122194,1.16628013592318,1.51096154727671,1.15913756419314,1.31377732815827,0.73260649706906,0.428736758158132,1.00314420807073,9.60078132449013,16.5717085142584,9.73922372846974,12.2015759464018,14.3867329151835,15.8632718451837,14.8504950050997,11.7083512838297,12.6879874515577,13.9795284172991,3.32119512269365,1.99512436700516,4.60980735536162,2.43106717068294,3.14419743941973,4.96377472815038,3.33370091702423,3.5025959730612,1.92551525755089,5.55933865880354,4.56262739802432,3.9611531691076,3.27745276144588,4.8018864303652,4.59483751644906,6.66811167796303,5.33067899346335,3.27945674788299,5.76920261124629,4.12156976376312,2.05721551431249,2.8396128985494,4.05341522910446,2.90692833264657,4.6113596403512,3.63842813934209,4.024415403201,3.41990624869196,3.93831930152999,2.80571135828869,3.08451047122853,4.72821515402705,4.09231043169689,3.71848418846318,3.08650577569826,4.49659040288303,2.33931608445408,2.79332370262788,2.67803664896381,3.97064554415128,1.62307484934295 | ||
|short_description=p3@Kifap3 | |short_description=p3@Kifap3 | ||
}} | }} |
Latest revision as of 16:40, 26 September 2015
Short description: | p3@Kifap3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kifap3_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 11bp_to_ENSMUST00000027877, ENSMUST00000077642_5end |
EntrezGene: | Kifap3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.02e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.02e-15 | 23 |
neuron | 2.01e-09 | 33 |
neuronal stem cell | 2.01e-09 | 33 |
neuroblast | 2.01e-09 | 33 |
electrically signaling cell | 2.01e-09 | 33 |
electrically responsive cell | 2.35e-07 | 39 |
electrically active cell | 2.35e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.27e-23 | 54 |
neural tube | 8.48e-22 | 52 |
neural rod | 8.48e-22 | 52 |
future spinal cord | 8.48e-22 | 52 |
neural keel | 8.48e-22 | 52 |
neurectoderm | 4.00e-21 | 64 |
neural plate | 4.00e-21 | 64 |
presumptive neural plate | 4.00e-21 | 64 |
gray matter | 1.40e-19 | 34 |
central nervous system | 2.57e-19 | 73 |
ecto-epithelium | 1.02e-18 | 73 |
nervous system | 1.20e-18 | 75 |
brain | 2.57e-18 | 47 |
future brain | 2.57e-18 | 47 |
pre-chordal neural plate | 4.05e-18 | 49 |
regional part of brain | 9.60e-18 | 46 |
ectoderm-derived structure | 2.42e-17 | 95 |
ectoderm | 2.42e-17 | 95 |
presumptive ectoderm | 2.42e-17 | 95 |
anterior neural tube | 2.06e-16 | 40 |
brain grey matter | 3.31e-16 | 29 |
regional part of telencephalon | 3.31e-16 | 29 |
telencephalon | 3.31e-16 | 29 |
regional part of forebrain | 9.70e-16 | 39 |
forebrain | 9.70e-16 | 39 |
future forebrain | 9.70e-16 | 39 |
structure with developmental contribution from neural crest | 1.17e-14 | 92 |
cerebral cortex | 3.25e-11 | 21 |
cerebral hemisphere | 3.25e-11 | 21 |
pallium | 3.25e-11 | 21 |
regional part of cerebral cortex | 3.99e-09 | 17 |
occipital lobe | 3.34e-07 | 10 |
visual cortex | 3.34e-07 | 10 |
neocortex | 3.34e-07 | 10 |