FFCP PHASE1:Mm9::chr7:51789665..51789686,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18971|HGNC=|MCL_coexpression_id=3625|UniProt=|association_with_transcript=-106bp_to_ENSMUST00000147503_5end|description=CAGE_peak_2_at_Pold1_5end|id=chr7:51789665..51789686,-|ontology_enrichment_celltype=CL:0000553!4.90e-10!6;CL:0000556!4.90e-10!6;CL:0000988!6.76e-07!32;CL:0002032!6.76e-07!32;CL:0000037!6.76e-07!32;CL:0000566!6.76e-07!32;CL:0000837!6.76e-07!32|ontology_enrichment_celltype_v019_2=CL:0000682,2.87e-13,3;CL:0000239,6.69e-11,6;CL:0000677,6.69e-11,6;CL:0000584,6.69e-11,6;CL:0000075,2.33e-09,7;CL:0002563,2.70e-07,9;CL:0002251,2.70e-07,9;CL:0000066,3.30e-07,25;CL:0000553,8.38e-07,6;CL:0000556,8.38e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!2.55e-17!48;UBERON:0002390!4.90e-14!45;UBERON:0003061!4.90e-14!45;UBERON:0002405!2.10e-10!70;UBERON:0004177!1.01e-09!29;UBERON:0004923!1.70e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0004923,1.84e-14,24;UBERON:0000344,4.19e-12,15;UBERON:0002465,7.26e-12,3;UBERON:0001962,1.47e-08,2;UBERON:0001961,1.47e-08,2;UBERON:0001744,1.47e-08,2;UBERON:0002193,9.50e-08,48;UBERON:0002405,9.50e-08,48;UBERON:0001242,1.61e-07,13;UBERON:0001262,1.61e-07,13;UBERON:0004786,1.61e-07,13;UBERON:0003350,2.70e-07,9;UBERON:0004808,2.70e-07,9;UBERON:0001277,2.70e-07,9|phase1_expression=0,5.58360652222978,5.91499011206397,0,0,4.53274034162102,3.50418960893289,0,0,0,0,0,0,0,0.666219523631325,0.607425802169478,0.699561878128147,7.09789872056035,5.62169177783529,6.79023442876848,0,3.07801948722744,3.6567970479451,2.55987876469451,3.89995777814189,6.89078356938024,8.61523992318149,5.60225204983311,0,0,4.43461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.38913030288682,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,2.07150306917737,0,0,0,0,0,0,0.125666591329675,0,0,2.65383165584962,0,0.220841518460394,0,0,0,0,0,0.838705871541442,0,0.381210681219194,0,0,0,0,0,0,0,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,1.40442637462647,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07567585436135,0,0.185194527369712,0.565105371014073,1.6403307326523,1.60144721244566,0,0,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0.608175645870493,1.02710957164827,0.25984164595559,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.304827226619999,0.100826185136841,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@Pold1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18971 | |||
|HGNC= | |||
|MCL_coexpression_id=3625 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-106bp_to_ENSMUST00000147503_5end | |||
|cluster_id=chr7:51789665..51789686,- | |||
|description=CAGE_peak_2_at_Pold1_5end | |||
|id=chr7:51789665..51789686,- | |||
|ontology_enrichment_celltype=CL:0000553!4.90e-10!6;CL:0000556!4.90e-10!6;CL:0000988!6.76e-07!32;CL:0002032!6.76e-07!32;CL:0000037!6.76e-07!32;CL:0000566!6.76e-07!32;CL:0000837!6.76e-07!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.87e-13,3;CL:0000239,6.69e-11,6;CL:0000677,6.69e-11,6;CL:0000584,6.69e-11,6;CL:0000075,2.33e-09,7;CL:0002563,2.70e-07,9;CL:0002251,2.70e-07,9;CL:0000066,3.30e-07,25;CL:0000553,8.38e-07,6;CL:0000556,8.38e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.55e-17!48;UBERON:0002390!4.90e-14!45;UBERON:0003061!4.90e-14!45;UBERON:0002405!2.10e-10!70;UBERON:0004177!1.01e-09!29;UBERON:0004923!1.70e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,1.84e-14,24;UBERON:0000344,4.19e-12,15;UBERON:0002465,7.26e-12,3;UBERON:0001962,1.47e-08,2;UBERON:0001961,1.47e-08,2;UBERON:0001744,1.47e-08,2;UBERON:0002193,9.50e-08,48;UBERON:0002405,9.50e-08,48;UBERON:0001242,1.61e-07,13;UBERON:0001262,1.61e-07,13;UBERON:0004786,1.61e-07,13;UBERON:0003350,2.70e-07,9;UBERON:0004808,2.70e-07,9;UBERON:0001277,2.70e-07,9 | |||
|phase1_expression=0,5.58360652222978,5.91499011206397,0,0,4.53274034162102,3.50418960893289,0,0,0,0,0,0,0,0.666219523631325,0.607425802169478,0.699561878128147,7.09789872056035,5.62169177783529,6.79023442876848,0,3.07801948722744,3.6567970479451,2.55987876469451,3.89995777814189,6.89078356938024,8.61523992318149,5.60225204983311,0,0,4.43461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.38913030288682,0.725362142011344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,2.07150306917737,0,0,0,0,0,0,0.125666591329675,0,0,2.65383165584962,0,0.220841518460394,0,0,0,0,0,0.838705871541442,0,0.381210681219194,0,0,0,0,0,0,0,0,0.373220911830279,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,1.40442637462647,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07567585436135,0,0.185194527369712,0.565105371014073,1.6403307326523,1.60144721244566,0,0,0.276399947608848,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0.621339313086926,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0.608175645870493,1.02710957164827,0.25984164595559,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0.201932899896295,0.304827226619999,0.100826185136841,0.0974578807397524,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@Pold1 | |||
}} |
Latest revision as of 20:09, 26 September 2015
Short description: | p2@Pold1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pold1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3625 |
Association with transcript: | -106bp_to_ENSMUST00000147503_5end |
EntrezGene: | Pold1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.87e-13 | 3 |
brush border epithelial cell | 6.69e-11 | 6 |
gut absorptive cell | 6.69e-11 | 6 |
enterocyte | 6.69e-11 | 6 |
columnar/cuboidal epithelial cell | 2.33e-09 | 7 |
intestinal epithelial cell | 2.70e-07 | 9 |
epithelial cell of alimentary canal | 2.70e-07 | 9 |
epithelial cell | 3.30e-07 | 25 |
megakaryocyte progenitor cell | 8.38e-07 | 6 |
megakaryocyte | 8.38e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 1.84e-14 | 24 |
mucosa | 4.19e-12 | 15 |
lymphoid system | 7.26e-12 | 3 |
gut-associated lymphoid tissue | 1.47e-08 | 2 |
mucosa-associated lymphoid tissue | 1.47e-08 | 2 |
lymphoid tissue | 1.47e-08 | 2 |
hemolymphoid system | 9.50e-08 | 48 |
immune system | 9.50e-08 | 48 |
intestinal mucosa | 1.61e-07 | 13 |
wall of intestine | 1.61e-07 | 13 |
gastrointestinal system mucosa | 1.61e-07 | 13 |
epithelium of mucosa | 2.70e-07 | 9 |
gastrointestinal system epithelium | 2.70e-07 | 9 |
intestinal epithelium | 2.70e-07 | 9 |