FFCP PHASE1:Mm9::chr1:181598318..181598329,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=109232 | |EntrezGene=109232 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R127 | |UniProt=Q8R127 | ||
|association_with_transcript=-11bp_to_ENSMUST00000040538,ENSMUST00000134287_5end | |association_with_transcript=-11bp_to_ENSMUST00000040538,ENSMUST00000134287_5end | ||
|cluster_id=chr1:181598318..181598329,+ | |||
|description=CAGE_peak_4_at_Sccpdh_5end | |description=CAGE_peak_4_at_Sccpdh_5end | ||
|id=chr1:181598318..181598329,+ | |id=chr1:181598318..181598329,+ | ||
|ontology_enrichment_celltype=CL:0000117!5.28e-09!23;CL:0000337!5.28e-09!23;CL:0000393!5.15e-07!39;CL:0000211!5.15e-07!39 | |ontology_enrichment_celltype=CL:0000117!5.28e-09!23;CL:0000337!5.28e-09!23;CL:0000393!5.15e-07!39;CL:0000211!5.15e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.92e-16,23;CL:0000337,6.92e-16,23;CL:0002612,4.85e-11,3;CL:0000540,1.75e-10,33;CL:0000047,1.75e-10,33;CL:0000031,1.75e-10,33;CL:0000404,1.75e-10,33;CL:0000393,2.96e-10,39;CL:0000211,2.96e-10,39;CL:0002319,1.34e-07,43;CL:0000221,2.21e-07,44;CL:0000133,2.21e-07,44;CL:0002321,6.99e-07,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.35e-08!52;UBERON:0005068!2.35e-08!52;UBERON:0006241!2.35e-08!52;UBERON:0007135!2.35e-08!52;UBERON:0002020!6.09e-08!34;UBERON:0000073!2.03e-07!75;UBERON:0001016!2.03e-07!75;UBERON:0001017!4.68e-07!73;UBERON:0005743!4.68e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,2.28e-14,6;UBERON:0005174,2.28e-14,6;UBERON:0001137,2.28e-14,6;UBERON:0001948,3.03e-11,5;UBERON:0002315,3.03e-11,5;UBERON:0002257,4.85e-11,3;UBERON:0003076,8.34e-10,12;UBERON:0003057,8.34e-10,12;UBERON:0001017,6.00e-09,73;UBERON:0001049,7.26e-09,52;UBERON:0005068,7.26e-09,52;UBERON:0006241,7.26e-09,52;UBERON:0007135,7.26e-09,52;UBERON:0001016,1.26e-08,75;UBERON:0002020,1.38e-08,34;UBERON:0000073,2.42e-08,54;UBERON:0002950,2.42e-08,4;UBERON:0001891,2.42e-08,4;UBERON:0009616,2.42e-08,4;UBERON:0010286,2.42e-08,4;UBERON:0004121,3.63e-07,95;UBERON:0000924,3.63e-07,95;UBERON:0006601,3.63e-07,95;UBERON:0002346,9.51e-07,64;UBERON:0003075,9.51e-07,64;UBERON:0007284,9.51e-07,64 | |||
|phase1_expression=0.80074423552397,0.348975407639361,0.454999239389536,0.30246421130683,1.50268718983904,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,5.44277056966847,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0,0.430942465371778,0.570070258369122,0.252030129759931,0.443461021310609,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.550640256485045,0,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0.514518872071894,0,1.03134418455488,1.01158230429799,0.528990979272033,1.26766280701236,0,0,0,0.988866362566974,0,0,0,0.829516898467821,1.08004750665353,0.841299845405528,1.14260393761521,0.441737081903227,0.61245399607477,0.766763768145891,2.75765635983006,0,1.0214987046815,0.921639199537461,0.263772575460388,0.640413505216868,0.52091337055676,0,1.68828783009504,1.06958773443767,1.76777151284201,1.13897344639282,1.4911955666024,0.302904773332736,0.755715601067855,0.869593466105033,0,0,0,0,0,0.561777680527007,0,0.779358013808606,0.70667914902068,0.985903938436763,2.56652954828636,0,0,0.216491041011214,0.760079596425296,0,0.68510327831436,0.258937883647172,0.29688427812965,0.346970653532272,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0.376999773989026,0.494389935468748,0.144599356919912,0,0.808834249737046,0.441683036920787,0,0,0.878342391034642,0.209446706813455,0,0.239630249011841,0,0,1.49790639404823,0.915001205637253,2.63874139437015,0.173824320192276,0.511430914660661,0.62336413367868,0.648965052271031,0.407357455401265,0,0.505445516867349,0,0.130120442962704,0,0,0.452114453507145,0.204109497453984,0.384341160854549,0.187403449119458,0,0.431135985865684,0.567318240503458,0.527853372491847,0.657587197282725,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.540186184383045,0,0.590292695242212,0.462801338662135,0.232533944750408,0.536546802799238,0.350296027101508,0.16455984991348,0.656669856316381,0.324275238183423,0.438599962275997,0.439100230582101,0.536825675041487,0.630869845692382,1.64647379806855,0.660837565967596,0.264450566663544,0,0,0.515469845288373,0,0.667134131534611,0,0,0.329397909448022,1.25667604400135,0.596869416123452,0.779856348476481,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,1.01825663922657,0.193952487167626,0.631222379012867,0.316182685621286,0.147610147979602,0.627994911365499,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,0,0.37898282354097,0.325929952884052,0.339490171550376,0.704070744865506,0.670025029767263,0.238043640886014,0.195133647857799,0.157635144106191,0,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,1.47529281905711,0,0.80275294993896,1.05490517932983,0.819674726883377,0,0.315508219416257,0,0,0,0.668396022247182,0,0.809621403349789,0,0,0.321321316421807,0.283880170416537,0,0.488660878060728,0,0,0,0,0.188605079755898,0,0,0,0.727067458955011,0,0,0,0,0.340439605753788,0,0.129358683782755,0.857348140126369,0.177340233642274,0.178368817602071,0.329098041204242,0,0.23467170806371,0,0.441056796109924,0.32977250588296,0,0.0603129249281559,0.119372344003136,0,0.582961673259701,1.66882771809459,0,0.206386867963223,0.370389054739423,0,0.136694227721025,0.228778173206523,0.169978429993855,0.279902904647316,0,0,0.474503990371703,0,0.432021363287205,0.209088296014469,0,0.269728692769641,0.165306911450672,0.523511883968059,0,0,38.3311198305249,0.598066184175915,0.496375471371293,0.388902376688095,0.129159823477731,0.168956125490778,0.469428954583016,0.13020438484395,0.419437377702843,5.79801889982414,17.8578603879877,0,0,0.205421914329655,0.129920822977795,0,0,0,0.295379054349154,0,0,0,0,0.0962118416403295,0,0.226730383615211,0.665957860122194,0.269141569828427,0.335769232728157,0,0.187682475451182,0,0.214368379079066,0,0,0.460325236507177,0,0,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0.51776031175182,0.31136204275253,0,0.341467211508268,0.243106717068294,0.628839487883947,0,0.222246727801615,0.412070114477788,0.320919209591815,0.505394423527595,0.25347929989024,0.188626341386076,0.468207537349412,0.384150914429216,0.459483751644906,0,0.579421629724277,0.578727661391115,0.412085900803307,0.588795680537589,0.342869252385415,0.177475806159338,0.238436189947321,0.726732083161643,0.376437521661322,0.25384382367503,0.365855945745545,0,0.135804113845862,0,0.355905054372522,0.689531376628944,0,0.77468420592983,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.57386499620653,0.661774257358546,0.231867835620421 | |phase1_expression=0.80074423552397,0.348975407639361,0.454999239389536,0.30246421130683,1.50268718983904,0,0,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0.137114433605739,0,5.44277056966847,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0,0.430942465371778,0.570070258369122,0.252030129759931,0.443461021310609,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.709638518536602,0.550640256485045,0,0,0.439372365468944,0.388859798148567,0.279972843250725,0,0,0,0,0.514518872071894,0,1.03134418455488,1.01158230429799,0.528990979272033,1.26766280701236,0,0,0,0.988866362566974,0,0,0,0.829516898467821,1.08004750665353,0.841299845405528,1.14260393761521,0.441737081903227,0.61245399607477,0.766763768145891,2.75765635983006,0,1.0214987046815,0.921639199537461,0.263772575460388,0.640413505216868,0.52091337055676,0,1.68828783009504,1.06958773443767,1.76777151284201,1.13897344639282,1.4911955666024,0.302904773332736,0.755715601067855,0.869593466105033,0,0,0,0,0,0.561777680527007,0,0.779358013808606,0.70667914902068,0.985903938436763,2.56652954828636,0,0,0.216491041011214,0.760079596425296,0,0.68510327831436,0.258937883647172,0.29688427812965,0.346970653532272,0.304465478312141,0.230615497256059,0.301445281105245,0.587943535678524,0.376999773989026,0.494389935468748,0.144599356919912,0,0.808834249737046,0.441683036920787,0,0,0.878342391034642,0.209446706813455,0,0.239630249011841,0,0,1.49790639404823,0.915001205637253,2.63874139437015,0.173824320192276,0.511430914660661,0.62336413367868,0.648965052271031,0.407357455401265,0,0.505445516867349,0,0.130120442962704,0,0,0.452114453507145,0.204109497453984,0.384341160854549,0.187403449119458,0,0.431135985865684,0.567318240503458,0.527853372491847,0.657587197282725,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0.207125772535502,0.469052119962192,0.540186184383045,0,0.590292695242212,0.462801338662135,0.232533944750408,0.536546802799238,0.350296027101508,0.16455984991348,0.656669856316381,0.324275238183423,0.438599962275997,0.439100230582101,0.536825675041487,0.630869845692382,1.64647379806855,0.660837565967596,0.264450566663544,0,0,0.515469845288373,0,0.667134131534611,0,0,0.329397909448022,1.25667604400135,0.596869416123452,0.779856348476481,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,1.01825663922657,0.193952487167626,0.631222379012867,0.316182685621286,0.147610147979602,0.627994911365499,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0,0.287696137450811,0,0,0,0,0.312037673114561,0,0,0,0,0.37898282354097,0.325929952884052,0.339490171550376,0.704070744865506,0.670025029767263,0.238043640886014,0.195133647857799,0.157635144106191,0,0.478364305972461,0.163863314715738,0.172684981865896,0,0,0,1.47529281905711,0,0.80275294993896,1.05490517932983,0.819674726883377,0,0.315508219416257,0,0,0,0.668396022247182,0,0.809621403349789,0,0,0.321321316421807,0.283880170416537,0,0.488660878060728,0,0,0,0,0.188605079755898,0,0,0,0.727067458955011,0,0,0,0,0.340439605753788,0,0.129358683782755,0.857348140126369,0.177340233642274,0.178368817602071,0.329098041204242,0,0.23467170806371,0,0.441056796109924,0.32977250588296,0,0.0603129249281559,0.119372344003136,0,0.582961673259701,1.66882771809459,0,0.206386867963223,0.370389054739423,0,0.136694227721025,0.228778173206523,0.169978429993855,0.279902904647316,0,0,0.474503990371703,0,0.432021363287205,0.209088296014469,0,0.269728692769641,0.165306911450672,0.523511883968059,0,0,38.3311198305249,0.598066184175915,0.496375471371293,0.388902376688095,0.129159823477731,0.168956125490778,0.469428954583016,0.13020438484395,0.419437377702843,5.79801889982414,17.8578603879877,0,0,0.205421914329655,0.129920822977795,0,0,0,0.295379054349154,0,0,0,0,0.0962118416403295,0,0.226730383615211,0.665957860122194,0.269141569828427,0.335769232728157,0,0.187682475451182,0,0.214368379079066,0,0,0.460325236507177,0,0,0.685082519770642,0.755393897389701,0.675022500231806,0,0.453142408984205,0.51776031175182,0.31136204275253,0,0.341467211508268,0.243106717068294,0.628839487883947,0,0.222246727801615,0.412070114477788,0.320919209591815,0.505394423527595,0.25347929989024,0.188626341386076,0.468207537349412,0.384150914429216,0.459483751644906,0,0.579421629724277,0.578727661391115,0.412085900803307,0.588795680537589,0.342869252385415,0.177475806159338,0.238436189947321,0.726732083161643,0.376437521661322,0.25384382367503,0.365855945745545,0,0.135804113845862,0,0.355905054372522,0.689531376628944,0,0.77468420592983,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.57386499620653,0.661774257358546,0.231867835620421 | ||
|short_description=p4@Sccpdh | |short_description=p4@Sccpdh | ||
}} | }} |
Latest revision as of 21:50, 26 September 2015
Short description: | p4@Sccpdh |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sccpdh_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -11bp_to_ENSMUST00000040538, ENSMUST00000134287_5end |
EntrezGene: | Sccpdh |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.92e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.92e-16 | 23 |
neuron of the ventral spinal cord | 4.85e-11 | 3 |
neuron | 1.75e-10 | 33 |
neuronal stem cell | 1.75e-10 | 33 |
neuroblast | 1.75e-10 | 33 |
electrically signaling cell | 1.75e-10 | 33 |
electrically responsive cell | 2.96e-10 | 39 |
electrically active cell | 2.96e-10 | 39 |
neural cell | 1.34e-07 | 43 |
ectodermal cell | 2.21e-07 | 44 |
neurectodermal cell | 2.21e-07 | 44 |
embryonic cell | 6.99e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 2.28e-14 | 6 |
dorsal region element | 2.28e-14 | 6 |
dorsum | 2.28e-14 | 6 |
regional part of spinal cord | 3.03e-11 | 5 |
gray matter of spinal cord | 3.03e-11 | 5 |
ventral horn of spinal cord | 4.85e-11 | 3 |
posterior neural tube | 8.34e-10 | 12 |
chordal neural plate | 8.34e-10 | 12 |
central nervous system | 6.00e-09 | 73 |
neural tube | 7.26e-09 | 52 |
neural rod | 7.26e-09 | 52 |
future spinal cord | 7.26e-09 | 52 |
neural keel | 7.26e-09 | 52 |
nervous system | 1.26e-08 | 75 |
gray matter | 1.38e-08 | 34 |
regional part of nervous system | 2.42e-08 | 54 |
regional part of midbrain | 2.42e-08 | 4 |
midbrain | 2.42e-08 | 4 |
presumptive midbrain | 2.42e-08 | 4 |
midbrain neural tube | 2.42e-08 | 4 |
ectoderm-derived structure | 3.63e-07 | 95 |
ectoderm | 3.63e-07 | 95 |
presumptive ectoderm | 3.63e-07 | 95 |
neurectoderm | 9.51e-07 | 64 |
neural plate | 9.51e-07 | 64 |
presumptive neural plate | 9.51e-07 | 64 |