FFCP PHASE1:Mm9::chr1:193541949..193541969,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:193541949..193541969,+
|short_description=p4@Lpgat1
|description=CAGE_peak_4_at_Lpgat1_5end
|association_with_transcript=43bp_to_ENSMUST00000138494_5end
|...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=226856 | |EntrezGene=226856 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3259 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=43bp_to_ENSMUST00000138494_5end | |||
|cluster_id=chr1:193541949..193541969,+ | |||
|description=CAGE_peak_4_at_Lpgat1_5end | |||
|id=chr1:193541949..193541969,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.11e-09!23;CL:0000337!4.11e-09!23;CL:0000540!7.34e-08!33;CL:0000047!7.34e-08!33;CL:0000031!7.34e-08!33;CL:0000404!7.34e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.32e-09,23;CL:0000337,1.32e-09,23;CL:0000540,1.12e-07,33;CL:0000047,1.12e-07,33;CL:0000031,1.12e-07,33;CL:0000404,1.12e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.59e-19,64;UBERON:0003075,9.59e-19,64;UBERON:0007284,9.59e-19,64;UBERON:0000073,2.29e-17,54;UBERON:0001049,4.80e-16,52;UBERON:0005068,4.80e-16,52;UBERON:0006241,4.80e-16,52;UBERON:0007135,4.80e-16,52;UBERON:0010371,4.96e-16,73;UBERON:0001017,9.96e-16,73;UBERON:0003056,1.93e-15,49;UBERON:0004121,1.51e-14,95;UBERON:0000924,1.51e-14,95;UBERON:0006601,1.51e-14,95;UBERON:0001016,1.68e-14,75;UBERON:0010314,2.52e-14,92;UBERON:0000955,5.21e-14,47;UBERON:0006238,5.21e-14,47;UBERON:0002616,1.84e-13,46;UBERON:0002020,1.35e-12,34;UBERON:0003080,1.76e-12,40;UBERON:0002780,8.12e-12,39;UBERON:0001890,8.12e-12,39;UBERON:0006240,8.12e-12,39;UBERON:0003528,1.07e-10,29;UBERON:0002791,1.07e-10,29;UBERON:0001893,1.07e-10,29;UBERON:0000956,1.72e-07,21;UBERON:0001869,1.72e-07,21;UBERON:0000203,1.72e-07,21 | |||
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| ||
|short_description=p4@Lpgat1 | |||
}} | }} |
Latest revision as of 00:21, 27 September 2015
Short description: | p4@Lpgat1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lpgat1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3259 |
Association with transcript: | 43bp_to_ENSMUST00000138494_5end |
EntrezGene: | Lpgat1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.32e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.32e-09 | 23 |
neuron | 1.12e-07 | 33 |
neuronal stem cell | 1.12e-07 | 33 |
neuroblast | 1.12e-07 | 33 |
electrically signaling cell | 1.12e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.59e-19 | 64 |
neural plate | 9.59e-19 | 64 |
presumptive neural plate | 9.59e-19 | 64 |
regional part of nervous system | 2.29e-17 | 54 |
neural tube | 4.80e-16 | 52 |
neural rod | 4.80e-16 | 52 |
future spinal cord | 4.80e-16 | 52 |
neural keel | 4.80e-16 | 52 |
ecto-epithelium | 4.96e-16 | 73 |
central nervous system | 9.96e-16 | 73 |
pre-chordal neural plate | 1.93e-15 | 49 |
ectoderm-derived structure | 1.51e-14 | 95 |
ectoderm | 1.51e-14 | 95 |
presumptive ectoderm | 1.51e-14 | 95 |
nervous system | 1.68e-14 | 75 |
structure with developmental contribution from neural crest | 2.52e-14 | 92 |
brain | 5.21e-14 | 47 |
future brain | 5.21e-14 | 47 |
regional part of brain | 1.84e-13 | 46 |
gray matter | 1.35e-12 | 34 |
anterior neural tube | 1.76e-12 | 40 |
regional part of forebrain | 8.12e-12 | 39 |
forebrain | 8.12e-12 | 39 |
future forebrain | 8.12e-12 | 39 |
brain grey matter | 1.07e-10 | 29 |
regional part of telencephalon | 1.07e-10 | 29 |
telencephalon | 1.07e-10 | 29 |
cerebral cortex | 1.72e-07 | 21 |
cerebral hemisphere | 1.72e-07 | 21 |
pallium | 1.72e-07 | 21 |