FFCP PHASE1:Mm9::chr4:58219450..58219459,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=64817|HGNC=|MCL_coexpression_id=2405|UniProt=A2AVA0|association_with_transcript=8bp_to_ENSMUST00000042850,NM_022814,uc008syr.1,uc008sys.1,uc008syt.1,uc008syu.2_5end|description=CAGE_peak_7_at_Svep1_5end|id=chr4:58219450..58219459,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000192,3.93e-19,3;CL:0000359,3.93e-19,3;CL:0002539,3.93e-19,3;CL:0000514,3.93e-19,3;CL:0000680,7.51e-10,6;CL:0000187,7.51e-10,6;CL:0000056,7.51e-10,6;CL:0000222,1.63e-08,7;CL:0002679,8.26e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000464!7.12e-10!57;UBERON:0002323!2.46e-07!37;UBERON:0004458!2.46e-07!37;UBERON:0002048!2.82e-07!14;UBERON:0000117!2.82e-07!14;UBERON:0000171!2.82e-07!14;UBERON:0000170!2.82e-07!14;UBERON:0005597!2.82e-07!14;UBERON:0000118!2.82e-07!14;UBERON:0005153!3.60e-07!17;UBERON:0003886!7.19e-07!38|ontology_enrichment_uberon_v019_2=UBERON:0001135,3.93e-19,3;UBERON:0004237,3.93e-19,3;UBERON:0004695,3.93e-19,3;UBERON:0002111,3.93e-19,3;UBERON:0004178,3.93e-19,3;UBERON:0000947,1.67e-14,4;UBERON:0001637,1.67e-14,4;UBERON:0004573,1.67e-14,4;UBERON:0003509,1.67e-14,4;UBERON:0004571,1.67e-14,4;UBERON:0010191,1.67e-14,4;UBERON:0004572,1.67e-14,4;UBERON:0000055,1.03e-11,5;UBERON:0007500,1.03e-11,5;UBERON:0001981,1.03e-11,5;UBERON:0002049,1.03e-11,5;UBERON:0007798,1.03e-11,5;UBERON:0004537,1.03e-11,5;UBERON:0006965,1.03e-11,5;UBERON:0006834,1.20e-07,1;UBERON:0001255,3.20e-07,1;UBERON:0001556,3.20e-07,1;UBERON:0002323,3.44e-07,37;UBERON:0004458,3.44e-07,37;UBERON:0003886,5.53e-07,38;UBERON:0002553,8.68e-07,39|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88845226963366,3.34543873024398,1.83546752161682,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0.85960031981627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0.441737081903227,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0.259786004602869,0,0,1.28326477414318,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0.150722640552623,0.352766121407114,0.125666591329675,0.247194967734374,0.433798070759735,0,0.323533699894818,0.220841518460394,0,0,0,0.41889341362691,0.510914110417183,0,0,0,0,0,0,0,0,0,0,2.03678727700633,0.497627882440372,0,0,0.260240885925407,0,0.360124259610698,0.452114453507145,0.272145996605311,0.384341160854549,0.281105173679186,0,0.431135985865684,0.378212160335639,0.527853372491847,0.657587197282725,0.556094498451196,0.348252166522167,0.205782136407943,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0.23674473558521,0,0,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0.162137619091711,0,0.439100230582101,0,0,0,0,0.264450566663544,1.06644125267617,0.232236671860439,0.257734922644187,0.605050573870028,0.444756087689741,0.380451252225118,0,0,0.754005626400808,0.198956472041151,0.19496408711912,1.79763881730844,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0.49095073923223,0.69560190836683,0.295220295959204,0.156998727841375,0.493588655687202,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.977789858652155,0.339490171550376,0.704070744865506,0.670025029767263,0.952174563544055,0.585400943573396,0.315270288212382,0.221464689648775,0.797273843287435,0.491589944147214,0.690739927463582,0.723245292907558,0,0,0.491764273019036,0,0,0,0.491804836130026,0.252470927204373,0,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0.534196811001766,1.30309567482861,0.329940245945071,1.32745138339963,0.728341908464944,0.604647113929502,0.377210159511796,0.295301892880773,0.614870295887855,1.29214146584111,0.727067458955011,0.356497378384721,0.632073515871632,0,0,0,0.18006109403131,0,0.643011105094777,0.177340233642274,0.891844088010353,0.493647061806363,0.304464949114599,0.704015124191131,0.21183207086382,0.441056796109924,0,0.322928853391811,0.0603129249281559,0.119372344003136,0.328281799490123,0.291480836629851,0.18542530201051,0.341741761595705,0.619160603889667,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,1.25452977608681,0.436725127492355,0.134864346384821,0.330613822901344,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0.165458490457098,1.36115831840833,1.16243841129958,0.168956125490778,0.469428954583016,0.13020438484395,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35232715822533,3.37828455812128,0.36630324853453,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0,0,0.824140228955577,0,0.252697211763798,0.25347929989024,0.754505365544305,0.37456602987953,0.128050304809739,0.287177344778066,0.476293691283074,0.463537303779422,0.578727661391115,0,0.588795680537589,0.342869252385415,0.177475806159338,0,0.436039249896986,0.376437521661322,0.338458431566706,0.365855945745545,0,0.271608227691724,0,0.237270036248348,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.749431733813838,0.467863216890817,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843|short_description=p7@Svep1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=64817 | |||
|HGNC= | |||
|MCL_coexpression_id=2405 | |||
|TSSclassifier=NA | |||
|UniProt=A2AVA0 | |||
|association_with_transcript=8bp_to_ENSMUST00000042850,NM_022814,uc008syr.1,uc008sys.1,uc008syt.1,uc008syu.2_5end | |||
|cluster_id=chr4:58219450..58219459,- | |||
|description=CAGE_peak_7_at_Svep1_5end | |||
|id=chr4:58219450..58219459,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000192,3.93e-19,3;CL:0000359,3.93e-19,3;CL:0002539,3.93e-19,3;CL:0000514,3.93e-19,3;CL:0000680,7.51e-10,6;CL:0000187,7.51e-10,6;CL:0000056,7.51e-10,6;CL:0000222,1.63e-08,7;CL:0002679,8.26e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000464!7.12e-10!57;UBERON:0002323!2.46e-07!37;UBERON:0004458!2.46e-07!37;UBERON:0002048!2.82e-07!14;UBERON:0000117!2.82e-07!14;UBERON:0000171!2.82e-07!14;UBERON:0000170!2.82e-07!14;UBERON:0005597!2.82e-07!14;UBERON:0000118!2.82e-07!14;UBERON:0005153!3.60e-07!17;UBERON:0003886!7.19e-07!38 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,3.93e-19,3;UBERON:0004237,3.93e-19,3;UBERON:0004695,3.93e-19,3;UBERON:0002111,3.93e-19,3;UBERON:0004178,3.93e-19,3;UBERON:0000947,1.67e-14,4;UBERON:0001637,1.67e-14,4;UBERON:0004573,1.67e-14,4;UBERON:0003509,1.67e-14,4;UBERON:0004571,1.67e-14,4;UBERON:0010191,1.67e-14,4;UBERON:0004572,1.67e-14,4;UBERON:0000055,1.03e-11,5;UBERON:0007500,1.03e-11,5;UBERON:0001981,1.03e-11,5;UBERON:0002049,1.03e-11,5;UBERON:0007798,1.03e-11,5;UBERON:0004537,1.03e-11,5;UBERON:0006965,1.03e-11,5;UBERON:0006834,1.20e-07,1;UBERON:0001255,3.20e-07,1;UBERON:0001556,3.20e-07,1;UBERON:0002323,3.44e-07,37;UBERON:0004458,3.44e-07,37;UBERON:0003886,5.53e-07,38;UBERON:0002553,8.68e-07,39 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88845226963366,3.34543873024398,1.83546752161682,0.782391344348039,0,0,0,0.139986421625363,0,0,0,0,0,0.85960031981627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571301968807607,0.441737081903227,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0.15279824777681,0,0.142371680799103,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0.170430322578058,0.259786004602869,0,0,1.28326477414318,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0.150722640552623,0.352766121407114,0.125666591329675,0.247194967734374,0.433798070759735,0,0.323533699894818,0.220841518460394,0,0,0,0.41889341362691,0.510914110417183,0,0,0,0,0,0,0,0,0,0,2.03678727700633,0.497627882440372,0,0,0.260240885925407,0,0.360124259610698,0.452114453507145,0.272145996605311,0.384341160854549,0.281105173679186,0,0.431135985865684,0.378212160335639,0.527853372491847,0.657587197282725,0.556094498451196,0.348252166522167,0.205782136407943,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0.23674473558521,0,0,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0.162137619091711,0,0.439100230582101,0,0,0,0,0.264450566663544,1.06644125267617,0.232236671860439,0.257734922644187,0.605050573870028,0.444756087689741,0.380451252225118,0,0,0.754005626400808,0.198956472041151,0.19496408711912,1.79763881730844,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0.203651327845314,0,0.49095073923223,0.69560190836683,0.295220295959204,0.156998727841375,0.493588655687202,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0.568474235311454,0.977789858652155,0.339490171550376,0.704070744865506,0.670025029767263,0.952174563544055,0.585400943573396,0.315270288212382,0.221464689648775,0.797273843287435,0.491589944147214,0.690739927463582,0.723245292907558,0,0,0.491764273019036,0,0,0,0.491804836130026,0.252470927204373,0,0,0,0,0.222798674082394,0,0,0,0,0,0.141940085208269,0.534196811001766,1.30309567482861,0.329940245945071,1.32745138339963,0.728341908464944,0.604647113929502,0.377210159511796,0.295301892880773,0.614870295887855,1.29214146584111,0.727067458955011,0.356497378384721,0.632073515871632,0,0,0,0.18006109403131,0,0.643011105094777,0.177340233642274,0.891844088010353,0.493647061806363,0.304464949114599,0.704015124191131,0.21183207086382,0.441056796109924,0,0.322928853391811,0.0603129249281559,0.119372344003136,0.328281799490123,0.291480836629851,0.18542530201051,0.341741761595705,0.619160603889667,0.185194527369712,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.648032044930808,1.25452977608681,0.436725127492355,0.134864346384821,0.330613822901344,0.26175594198403,0.259229946583586,0,0,0.149516546043979,0.165458490457098,1.36115831840833,1.16243841129958,0.168956125490778,0.469428954583016,0.13020438484395,0.104859344425711,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35232715822533,3.37828455812128,0.36630324853453,0.428736758158132,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.341467211508268,0.486213434136588,0,0,0,0.824140228955577,0,0.252697211763798,0.25347929989024,0.754505365544305,0.37456602987953,0.128050304809739,0.287177344778066,0.476293691283074,0.463537303779422,0.578727661391115,0,0.588795680537589,0.342869252385415,0.177475806159338,0,0.436039249896986,0.376437521661322,0.338458431566706,0.365855945745545,0,0.271608227691724,0,0.237270036248348,0.492522411877817,0.409231043169689,0.464810523557898,0.385813221962283,0.749431733813838,0.467863216890817,0.429742108096597,0.191288332068843,0.441182838239031,0.463735671240843 | |||
|short_description=p7@Svep1 | |||
}} |
Latest revision as of 03:10, 27 September 2015
Short description: | p7@Svep1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Svep1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2405 |
Association with transcript: | 8bp_to_ENSMUST00000042850, NM_022814, uc008syr.1, uc008sys.1, uc008syt.1, uc008syu.2_5end |
EntrezGene: | Svep1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 3.93e-19 | 3 |
vascular associated smooth muscle cell | 3.93e-19 | 3 |
aortic smooth muscle cell | 3.93e-19 | 3 |
smooth muscle myoblast | 3.93e-19 | 3 |
muscle precursor cell | 7.51e-10 | 6 |
muscle cell | 7.51e-10 | 6 |
myoblast | 7.51e-10 | 6 |
mesodermal cell | 1.63e-08 | 7 |
natural helper lymphocyte | 8.26e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 3.93e-19 | 3 |
blood vessel smooth muscle | 3.93e-19 | 3 |
arterial system smooth muscle | 3.93e-19 | 3 |
artery smooth muscle tissue | 3.93e-19 | 3 |
aorta smooth muscle tissue | 3.93e-19 | 3 |
aorta | 1.67e-14 | 4 |
artery | 1.67e-14 | 4 |
systemic artery | 1.67e-14 | 4 |
arterial blood vessel | 1.67e-14 | 4 |
systemic arterial system | 1.67e-14 | 4 |
aortic system | 1.67e-14 | 4 |
arterial system | 1.67e-14 | 4 |
vessel | 1.03e-11 | 5 |
epithelial tube open at both ends | 1.03e-11 | 5 |
blood vessel | 1.03e-11 | 5 |
vasculature | 1.03e-11 | 5 |
vascular system | 1.03e-11 | 5 |
blood vasculature | 1.03e-11 | 5 |
vascular cord | 1.03e-11 | 5 |
uterus or analog | 1.20e-07 | 1 |
urinary bladder | 3.20e-07 | 1 |
lower urinary tract | 3.20e-07 | 1 |
body cavity | 3.44e-07 | 37 |
body cavity or lining | 3.44e-07 | 37 |
body cavity precursor | 5.53e-07 | 38 |
anatomical cavity | 8.68e-07 | 39 |