FFCP PHASE1:Mm9::chr15:89026845..89026861,-: Difference between revisions
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{{FFCP|EntrezGene=69440|HGNC=|MCL_coexpression_id=1|UniProt=Q9D9V7|association_with_transcript=43bp_to_ENSMUST00000078953,NM_027081,uc007xft.1_5end|description=CAGE_peak_2_at_Fam116b_5end|id=chr15:89026845..89026861,-|ontology_enrichment_celltype=CL:0000117!2.04e-11!23;CL:0000337!2.04e-11!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.47e-11,23;CL:0000337,1.47e-11,23;CL:0000540,9.70e-07,33;CL:0000047,9.70e-07,33;CL:0000031,9.70e-07,33;CL:0000404,9.70e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.65e-23!86;UBERON:0000153!5.36e-23!94;UBERON:0000033!2.09e-22!63;UBERON:0001049!1.01e-21!52;UBERON:0005068!1.01e-21!52;UBERON:0006241!1.01e-21!52;UBERON:0007135!1.01e-21!52;UBERON:0000955!5.61e-21!50;UBERON:0006238!5.61e-21!50;UBERON:0002616!2.56e-20!49;UBERON:0003056!1.45e-19!49;UBERON:0001017!4.58e-19!73;UBERON:0005743!4.58e-19!73;UBERON:0002346!1.06e-18!71;UBERON:0003075!1.06e-18!71;UBERON:0007284!1.06e-18!71;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0003080!3.02e-17!40;UBERON:0002780!1.55e-16!39;UBERON:0001890!1.55e-16!39;UBERON:0006240!1.55e-16!39;UBERON:0002020!4.53e-15!34;UBERON:0004121!3.99e-13!102;UBERON:0000924!3.99e-13!102;UBERON:0006601!3.99e-13!102;UBERON:0002791!1.46e-12!29;UBERON:0003528!1.46e-12!29;UBERON:0001893!1.46e-12!29;UBERON:0000956!6.55e-08!21;UBERON:0001869!6.55e-08!21;UBERON:0000203!6.55e-08!21;UBERON:0002619!1.77e-07!17;UBERON:0000475!3.93e-07!200;UBERON:0002021!4.27e-07!10;UBERON:0000411!4.27e-07!10;UBERON:0001950!4.27e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.52e-23,64;UBERON:0003075,2.52e-23,64;UBERON:0007284,2.52e-23,64;UBERON:0000073,5.62e-23,54;UBERON:0001049,1.26e-21,52;UBERON:0005068,1.26e-21,52;UBERON:0006241,1.26e-21,52;UBERON:0007135,1.26e-21,52;UBERON:0003056,1.24e-19,49;UBERON:0001017,2.80e-19,73;UBERON:0000955,6.23e-19,47;UBERON:0006238,6.23e-19,47;UBERON:0010371,1.13e-18,73;UBERON:0002616,2.79e-18,46;UBERON:0001016,1.23e-17,75;UBERON:0003080,2.81e-17,40;UBERON:0002780,1.47e-16,39;UBERON:0001890,1.47e-16,39;UBERON:0006240,1.47e-16,39;UBERON:0004121,3.09e-16,95;UBERON:0000924,3.09e-16,95;UBERON:0006601,3.09e-16,95;UBERON:0002020,4.54e-15,34;UBERON:0010314,8.06e-14,92;UBERON:0003528,1.56e-12,29;UBERON:0002791,1.56e-12,29;UBERON:0001893,1.56e-12,29;UBERON:0000956,7.80e-08,21;UBERON:0001869,7.80e-08,21;UBERON:0000203,7.80e-08,21;UBERON:0002619,2.19e-07,17;UBERON:0002021,3.55e-07,10;UBERON:0000411,3.55e-07,10;UBERON:0001950,3.55e-07,10|phase1_expression=3.04282809499109,0.697950815278722,0.909998478779072,0.60492842261366,2.00358291978539,0.839396359559449,0.700837921786577,6.97265946584512,5.91312633037,5.85161315804984,8.04724450659873,6.1424562426409,5.64962408772979,5.94458736449182,1.66554880907831,0.607425802169478,0.699561878128147,4.41647031501533,4.66189074259512,5.94145512517242,6.12311689087702,0.794327609607082,1.04479915655574,0.799962113967033,1.14704640533585,0,0.86152399231815,0.646413698057667,0.950117097281869,1.00812051903972,1.77384408524244,1.90509202037889,4.30545351309199,0,2.88851619751275,1.16364251750945,2.85837098767317,0,0,0,0,0,0,0.881277725829041,0.405507724878058,0.550640256485045,1.56478268869608,0.872100625521786,0.878744730937887,1.55543919259427,0.139986421625363,0,3.85899993932794,3.62681071005672,3.6970317905671,0,0,0,15.1737345644698,16.9277113367051,12.6766280701236,0,0.889294796111139,0.449949858640699,0,0,3.29560121570245,3.45796474789399,2.48855069540346,2.97013064329719,2.52389953621658,12.2829923293636,12.3686382932904,6.49201235839256,6.22995561618536,13.7882817991503,23.1243350098716,18.8977260366078,15.0534402591119,22.5525552018631,18.2975287204819,15.106487746146,17.588528937087,17.4456409109821,17.5717984943332,15.9099436155781,9.11178757114259,14.1663578827228,0.151452386666368,0.302286240427142,1.44932244350839,1.72084775396277,0,5.39703191637817,2.59910566979068,3.13618820968135,3.23022166303029,0.852151612890289,0.779358013808606,0,1.12674735821344,1.28326477414318,2.54805239706646,0,1.08245520505607,1.77351905832569,1.51657333504435,1.82694207550496,3.88406825470758,1.1875371125186,1.73485326766136,0.913396434936424,0.922461989024234,1.3565037649736,0.470354828542819,0.879666139307728,1.23597483867187,0.433798070759735,1.76922110389975,1.94120219936891,1.76673214768315,0.484875253135222,1.86391761218122,25.4719293400046,31.6264527288317,1.27728527604296,0.11981512450592,1.19980546198682,0.254140454146129,28.9095934051308,27.9075367719362,20.4816593943969,21.9018643442268,26.5944075623544,17.6619837875626,23.5249831448249,1.01839363850316,1.24406970610093,1.51633655060205,2.73574412652416,3.25301107406759,4.13823787980251,3.60124259610698,4.37043971723574,5.10273743634959,4.35586648968489,4.59138450342671,11.6416516832557,0.862271971731369,6.05139456537022,5.10258260075452,1.53437012699302,3.61461423993277,1.39300866608867,1.23469281844766,3.18454826909589,0,0.51469581422943,0.284163499395593,3.72826390563903,1.641682419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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=69440 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D9V7 | |||
|association_with_transcript=43bp_to_ENSMUST00000078953,NM_027081,uc007xft.1_5end | |||
|cluster_id=chr15:89026845..89026861,- | |||
|description=CAGE_peak_2_at_Fam116b_5end | |||
|id=chr15:89026845..89026861,- | |||
|ontology_enrichment_celltype=CL:0000117!2.04e-11!23;CL:0000337!2.04e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.47e-11,23;CL:0000337,1.47e-11,23;CL:0000540,9.70e-07,33;CL:0000047,9.70e-07,33;CL:0000031,9.70e-07,33;CL:0000404,9.70e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.65e-23!86;UBERON:0000153!5.36e-23!94;UBERON:0000033!2.09e-22!63;UBERON:0001049!1.01e-21!52;UBERON:0005068!1.01e-21!52;UBERON:0006241!1.01e-21!52;UBERON:0007135!1.01e-21!52;UBERON:0000955!5.61e-21!50;UBERON:0006238!5.61e-21!50;UBERON:0002616!2.56e-20!49;UBERON:0003056!1.45e-19!49;UBERON:0001017!4.58e-19!73;UBERON:0005743!4.58e-19!73;UBERON:0002346!1.06e-18!71;UBERON:0003075!1.06e-18!71;UBERON:0007284!1.06e-18!71;UBERON:0000073!2.72e-17!75;UBERON:0001016!2.72e-17!75;UBERON:0003080!3.02e-17!40;UBERON:0002780!1.55e-16!39;UBERON:0001890!1.55e-16!39;UBERON:0006240!1.55e-16!39;UBERON:0002020!4.53e-15!34;UBERON:0004121!3.99e-13!102;UBERON:0000924!3.99e-13!102;UBERON:0006601!3.99e-13!102;UBERON:0002791!1.46e-12!29;UBERON:0003528!1.46e-12!29;UBERON:0001893!1.46e-12!29;UBERON:0000956!6.55e-08!21;UBERON:0001869!6.55e-08!21;UBERON:0000203!6.55e-08!21;UBERON:0002619!1.77e-07!17;UBERON:0000475!3.93e-07!200;UBERON:0002021!4.27e-07!10;UBERON:0000411!4.27e-07!10;UBERON:0001950!4.27e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.52e-23,64;UBERON:0003075,2.52e-23,64;UBERON:0007284,2.52e-23,64;UBERON:0000073,5.62e-23,54;UBERON:0001049,1.26e-21,52;UBERON:0005068,1.26e-21,52;UBERON:0006241,1.26e-21,52;UBERON:0007135,1.26e-21,52;UBERON:0003056,1.24e-19,49;UBERON:0001017,2.80e-19,73;UBERON:0000955,6.23e-19,47;UBERON:0006238,6.23e-19,47;UBERON:0010371,1.13e-18,73;UBERON:0002616,2.79e-18,46;UBERON:0001016,1.23e-17,75;UBERON:0003080,2.81e-17,40;UBERON:0002780,1.47e-16,39;UBERON:0001890,1.47e-16,39;UBERON:0006240,1.47e-16,39;UBERON:0004121,3.09e-16,95;UBERON:0000924,3.09e-16,95;UBERON:0006601,3.09e-16,95;UBERON:0002020,4.54e-15,34;UBERON:0010314,8.06e-14,92;UBERON:0003528,1.56e-12,29;UBERON:0002791,1.56e-12,29;UBERON:0001893,1.56e-12,29;UBERON:0000956,7.80e-08,21;UBERON:0001869,7.80e-08,21;UBERON:0000203,7.80e-08,21;UBERON:0002619,2.19e-07,17;UBERON:0002021,3.55e-07,10;UBERON:0000411,3.55e-07,10;UBERON:0001950,3.55e-07,10 | |||
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| |||
|short_description=p2@Fam116b | |||
}} |
Latest revision as of 07:17, 27 September 2015
Short description: | p2@Fam116b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Fam116b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 43bp_to_ENSMUST00000078953, NM_027081, uc007xft.1_5end |
EntrezGene: | Fam116b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.47e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.47e-11 | 23 |
neuron | 9.70e-07 | 33 |
neuronal stem cell | 9.70e-07 | 33 |
neuroblast | 9.70e-07 | 33 |
electrically signaling cell | 9.70e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.52e-23 | 64 |
neural plate | 2.52e-23 | 64 |
presumptive neural plate | 2.52e-23 | 64 |
regional part of nervous system | 5.62e-23 | 54 |
neural tube | 1.26e-21 | 52 |
neural rod | 1.26e-21 | 52 |
future spinal cord | 1.26e-21 | 52 |
neural keel | 1.26e-21 | 52 |
pre-chordal neural plate | 1.24e-19 | 49 |
central nervous system | 2.80e-19 | 73 |
brain | 6.23e-19 | 47 |
future brain | 6.23e-19 | 47 |
ecto-epithelium | 1.13e-18 | 73 |
regional part of brain | 2.79e-18 | 46 |
nervous system | 1.23e-17 | 75 |
anterior neural tube | 2.81e-17 | 40 |
regional part of forebrain | 1.47e-16 | 39 |
forebrain | 1.47e-16 | 39 |
future forebrain | 1.47e-16 | 39 |
ectoderm-derived structure | 3.09e-16 | 95 |
ectoderm | 3.09e-16 | 95 |
presumptive ectoderm | 3.09e-16 | 95 |
gray matter | 4.54e-15 | 34 |
structure with developmental contribution from neural crest | 8.06e-14 | 92 |
brain grey matter | 1.56e-12 | 29 |
regional part of telencephalon | 1.56e-12 | 29 |
telencephalon | 1.56e-12 | 29 |
cerebral cortex | 7.80e-08 | 21 |
cerebral hemisphere | 7.80e-08 | 21 |
pallium | 7.80e-08 | 21 |
regional part of cerebral cortex | 2.19e-07 | 17 |
occipital lobe | 3.55e-07 | 10 |
visual cortex | 3.55e-07 | 10 |
neocortex | 3.55e-07 | 10 |