FFCP PHASE1:Mm9::chr3:115711293..115711320,+: Difference between revisions
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{{FFCP|EntrezGene=58193|HGNC=|MCL_coexpression_id=121|UniProt=Q8C089,Q9ES89|association_with_transcript=78bp_to_NM_001163514,uc008rbw.2_5end|description=CAGE_peak_3_at_Extl2_5end|id=chr3:115711293..115711320,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-07,23;CL:0000337,5.20e-07,23;CL:0000393,5.63e-07,39;CL:0000211,5.63e-07,39;CL:0000540,7.14e-07,33;CL:0000047,7.14e-07,33;CL:0000031,7.14e-07,33;CL:0000404,7.14e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!9.98e-18!71;UBERON:0003075!9.98e-18!71;UBERON:0007284!9.98e-18!71;UBERON:0001017!3.44e-17!73;UBERON:0005743!3.44e-17!73;UBERON:0000073!4.34e-17!75;UBERON:0001016!4.34e-17!75;UBERON:0001049!8.61e-16!52;UBERON:0005068!8.61e-16!52;UBERON:0006241!8.61e-16!52;UBERON:0007135!8.61e-16!52;UBERON:0004121!9.39e-15!102;UBERON:0000924!9.39e-15!102;UBERON:0006601!9.39e-15!102;UBERON:0000033!1.00e-14!63;UBERON:0002616!2.33e-14!49;UBERON:0000955!3.53e-14!50;UBERON:0006238!3.53e-14!50;UBERON:0003056!1.31e-11!49;UBERON:0003080!9.53e-11!40;UBERON:0002020!1.09e-10!34;UBERON:0002780!3.48e-10!39;UBERON:0001890!3.48e-10!39;UBERON:0006240!3.48e-10!39;UBERON:0004111!5.60e-10!122;UBERON:0000025!1.01e-09!114;UBERON:0002791!2.96e-08!29;UBERON:0003528!2.96e-08!29;UBERON:0001893!2.96e-08!29;UBERON:0002021!3.52e-07!10;UBERON:0000411!3.52e-07!10;UBERON:0001950!3.52e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.59e-19,92;UBERON:0000073,2.92e-19,54;UBERON:0002346,3.57e-19,64;UBERON:0003075,3.57e-19,64;UBERON:0007284,3.57e-19,64;UBERON:0001017,2.33e-18,73;UBERON:0001016,2.91e-18,75;UBERON:0001049,8.17e-18,52;UBERON:0005068,8.17e-18,52;UBERON:0006241,8.17e-18,52;UBERON:0007135,8.17e-18,52;UBERON:0010371,4.22e-16,73;UBERON:0004121,6.47e-15,95;UBERON:0000924,6.47e-15,95;UBERON:0006601,6.47e-15,95;UBERON:0002616,5.05e-14,46;UBERON:0000955,2.28e-13,47;UBERON:0006238,2.28e-13,47;UBERON:0003056,4.61e-13,49;UBERON:0002020,8.55e-13,34;UBERON:0003080,1.86e-12,40;UBERON:0002780,8.64e-12,39;UBERON:0001890,8.64e-12,39;UBERON:0006240,8.64e-12,39;UBERON:0003528,7.11e-10,29;UBERON:0002791,7.11e-10,29;UBERON:0001893,7.11e-10,29;UBERON:0004111,8.97e-10,122;UBERON:0000025,4.75e-09,114;UBERON:0002021,2.96e-08,10;UBERON:0000411,2.96e-08,10;UBERON:0001950,2.96e-08,10;UBERON:0000956,5.45e-07,21;UBERON:0001869,5.45e-07,21;UBERON:0000203,5.45e-07,21|phase1_expression=4.16387002472464,0,0.454999239389536,0,0,0.16787927191189,0.233612640595526,0.258246646883153,0.281577444303333,0,0,0,0,0.0874204024189974,0,0.404950534779652,0,0,0.137114433605739,0,4.42225108785563,0.992909512008853,0.783599367416806,1.11994695955385,0.91763712426868,0.57423196411502,0,0.430942465371778,0.760093677825496,0,0.886922042621219,0,0.61506478758457,0,1.44425809875637,0.997407872150954,0.408338712524738,0.418531630736908,0.7813353445238,2.61761871986899,6.47054636834116,2.04913645487534,0.971020706062307,1.6366586336825,1.4192770370732,2.9367480345869,0.782391344348039,0.872100625521786,1.5378032791413,0.777719596297134,1.53985063787899,0,0.503347818173209,0,0.336093799142464,1.28629718017973,0.573066879877513,0.515672092277442,1.82084814773638,0.528990979272033,1.90149421051854,1.35537812827653,2.66788438833342,0,0.988866362566974,0,0.898800331555214,1.15265491596466,1.55534418462716,1.62007125998029,0.420649922702764,7.14127461009509,6.62605622854841,0.489963196859816,1.72521847832825,0,9.91042928994498,13.4071704989447,9.98442466165583,1.05509030184155,1.82975287204819,1.56274011167028,12.5632349550621,3.93933827022176,4.73674568108111,4.71405736757868,4.9830088279686,3.54158947068071,0.530083353332288,2.11600368298999,4.05810284182349,0.860423876981386,0,0.539703191637817,0.649776417447669,0.448026887097336,0.983110940922263,1.87473354835864,2.85764605063156,3.5333957451034,4.3661460130771,2.56652954828636,0,0,0.649473123033642,1.01343946190039,0.505524445014783,0.45673551887624,1.03575153458869,2.67195850316685,1.73485326766136,1.82679286987285,0.922461989024234,1.05505848386836,1.05829836422134,0.753999547978053,0,0.86759614151947,0,2.58826959915855,0.883366073841574,0,0,34.5481340473626,36.2342802787277,0,0.958520996047362,0.599902730993408,0.762421362438388,11.0845073159569,8.23501085073528,1.25654352112864,11.8200537730748,11.7629110371952,14.1295870300501,8.27430441645564,0.916554274652847,0.995255764880744,0.505445516867349,3.15662783829711,1.43132487258974,0.459804208866946,1.98068342785884,0.90422890701429,0.680364991513279,1.7935920839879,1.96773621575431,4.39795730256327,1.29340795759705,1.13463648100692,0.703804496655795,0.657587197282725,1.39023624612799,0.696504333044333,1.02891068203972,0.398068533636986,1.40442637462647,0.772043721344145,1.13665399758237,1.24275463521301,0.938104239924385,1.2604344302271,1.89395788468168,1.37734962223183,1.54267112887378,1.16266972375204,2.14618721119695,1.75148013550754,1.81015834904829,1.97000956894914,0.56748166682099,1.02339991197733,0.658650345873152,0.536825675041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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=58193 | |||
|HGNC= | |||
|MCL_coexpression_id=121 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C089,Q9ES89 | |||
|association_with_transcript=78bp_to_NM_001163514,uc008rbw.2_5end | |||
|cluster_id=chr3:115711293..115711320,+ | |||
|description=CAGE_peak_3_at_Extl2_5end | |||
|id=chr3:115711293..115711320,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-07,23;CL:0000337,5.20e-07,23;CL:0000393,5.63e-07,39;CL:0000211,5.63e-07,39;CL:0000540,7.14e-07,33;CL:0000047,7.14e-07,33;CL:0000031,7.14e-07,33;CL:0000404,7.14e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!9.98e-18!71;UBERON:0003075!9.98e-18!71;UBERON:0007284!9.98e-18!71;UBERON:0001017!3.44e-17!73;UBERON:0005743!3.44e-17!73;UBERON:0000073!4.34e-17!75;UBERON:0001016!4.34e-17!75;UBERON:0001049!8.61e-16!52;UBERON:0005068!8.61e-16!52;UBERON:0006241!8.61e-16!52;UBERON:0007135!8.61e-16!52;UBERON:0004121!9.39e-15!102;UBERON:0000924!9.39e-15!102;UBERON:0006601!9.39e-15!102;UBERON:0000033!1.00e-14!63;UBERON:0002616!2.33e-14!49;UBERON:0000955!3.53e-14!50;UBERON:0006238!3.53e-14!50;UBERON:0003056!1.31e-11!49;UBERON:0003080!9.53e-11!40;UBERON:0002020!1.09e-10!34;UBERON:0002780!3.48e-10!39;UBERON:0001890!3.48e-10!39;UBERON:0006240!3.48e-10!39;UBERON:0004111!5.60e-10!122;UBERON:0000025!1.01e-09!114;UBERON:0002791!2.96e-08!29;UBERON:0003528!2.96e-08!29;UBERON:0001893!2.96e-08!29;UBERON:0002021!3.52e-07!10;UBERON:0000411!3.52e-07!10;UBERON:0001950!3.52e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.59e-19,92;UBERON:0000073,2.92e-19,54;UBERON:0002346,3.57e-19,64;UBERON:0003075,3.57e-19,64;UBERON:0007284,3.57e-19,64;UBERON:0001017,2.33e-18,73;UBERON:0001016,2.91e-18,75;UBERON:0001049,8.17e-18,52;UBERON:0005068,8.17e-18,52;UBERON:0006241,8.17e-18,52;UBERON:0007135,8.17e-18,52;UBERON:0010371,4.22e-16,73;UBERON:0004121,6.47e-15,95;UBERON:0000924,6.47e-15,95;UBERON:0006601,6.47e-15,95;UBERON:0002616,5.05e-14,46;UBERON:0000955,2.28e-13,47;UBERON:0006238,2.28e-13,47;UBERON:0003056,4.61e-13,49;UBERON:0002020,8.55e-13,34;UBERON:0003080,1.86e-12,40;UBERON:0002780,8.64e-12,39;UBERON:0001890,8.64e-12,39;UBERON:0006240,8.64e-12,39;UBERON:0003528,7.11e-10,29;UBERON:0002791,7.11e-10,29;UBERON:0001893,7.11e-10,29;UBERON:0004111,8.97e-10,122;UBERON:0000025,4.75e-09,114;UBERON:0002021,2.96e-08,10;UBERON:0000411,2.96e-08,10;UBERON:0001950,2.96e-08,10;UBERON:0000956,5.45e-07,21;UBERON:0001869,5.45e-07,21;UBERON:0000203,5.45e-07,21 | |||
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| |||
|short_description=p3@Extl2 | |||
}} |
Latest revision as of 11:49, 1 October 2015
Short description: | p3@Extl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Extl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:121 |
Association with transcript: | 78bp_to_NM_001163514, uc008rbw.2_5end |
EntrezGene: | Extl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.20e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.20e-07 | 23 |
electrically responsive cell | 5.63e-07 | 39 |
electrically active cell | 5.63e-07 | 39 |
neuron | 7.14e-07 | 33 |
neuronal stem cell | 7.14e-07 | 33 |
neuroblast | 7.14e-07 | 33 |
electrically signaling cell | 7.14e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.59e-19 | 92 |
regional part of nervous system | 2.92e-19 | 54 |
neurectoderm | 3.57e-19 | 64 |
neural plate | 3.57e-19 | 64 |
presumptive neural plate | 3.57e-19 | 64 |
central nervous system | 2.33e-18 | 73 |
nervous system | 2.91e-18 | 75 |
neural tube | 8.17e-18 | 52 |
neural rod | 8.17e-18 | 52 |
future spinal cord | 8.17e-18 | 52 |
neural keel | 8.17e-18 | 52 |
ecto-epithelium | 4.22e-16 | 73 |
ectoderm-derived structure | 6.47e-15 | 95 |
ectoderm | 6.47e-15 | 95 |
presumptive ectoderm | 6.47e-15 | 95 |
regional part of brain | 5.05e-14 | 46 |
brain | 2.28e-13 | 47 |
future brain | 2.28e-13 | 47 |
pre-chordal neural plate | 4.61e-13 | 49 |
gray matter | 8.55e-13 | 34 |
anterior neural tube | 1.86e-12 | 40 |
regional part of forebrain | 8.64e-12 | 39 |
forebrain | 8.64e-12 | 39 |
future forebrain | 8.64e-12 | 39 |
brain grey matter | 7.11e-10 | 29 |
regional part of telencephalon | 7.11e-10 | 29 |
telencephalon | 7.11e-10 | 29 |
anatomical conduit | 8.97e-10 | 122 |
tube | 4.75e-09 | 114 |
occipital lobe | 2.96e-08 | 10 |
visual cortex | 2.96e-08 | 10 |
neocortex | 2.96e-08 | 10 |
cerebral cortex | 5.45e-07 | 21 |
cerebral hemisphere | 5.45e-07 | 21 |
pallium | 5.45e-07 | 21 |