FFCP PHASE1:Mm9::chr8:113443774..113443802,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20444 | |EntrezGene=20444 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |MCL_coexpression_id=13 | ||
|TSSclassifier=NA | |||
|UniProt=Q11204,D3Z3V2 | |UniProt=Q11204,D3Z3V2 | ||
|association_with_transcript=9bp_to_NM_009179,uc009nlj.2,uc009nlk.2_5end | |association_with_transcript=9bp_to_NM_009179,uc009nlj.2,uc009nlk.2_5end | ||
|cluster_id=chr8:113443774..113443802,+ | |||
|description=CAGE_peak_2_at_St3gal2_5end | |description=CAGE_peak_2_at_St3gal2_5end | ||
|id=chr8:113443774..113443802,+ | |id=chr8:113443774..113443802,+ | ||
|ontology_enrichment_celltype=CL:0002319!6.68e-15!43;CL:0000221!8.16e-15!44;CL:0000133!8.16e-15!44;CL:0000117!2.73e-12!23;CL:0000337!2.73e-12!23;CL:0000055!4.26e-12!50;CL:0000540!1.29e-11!33;CL:0000047!1.29e-11!33;CL:0000031!1.29e-11!33;CL:0000404!1.29e-11!33;CL:0000393!1.46e-09!39;CL:0000211!1.46e-09!39 | |ontology_enrichment_celltype=CL:0002319!6.68e-15!43;CL:0000221!8.16e-15!44;CL:0000133!8.16e-15!44;CL:0000117!2.73e-12!23;CL:0000337!2.73e-12!23;CL:0000055!4.26e-12!50;CL:0000540!1.29e-11!33;CL:0000047!1.29e-11!33;CL:0000031!1.29e-11!33;CL:0000404!1.29e-11!33;CL:0000393!1.46e-09!39;CL:0000211!1.46e-09!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.05e-15,43;CL:0000221,6.19e-15,44;CL:0000133,6.19e-15,44;CL:0000117,2.18e-12,23;CL:0000337,2.18e-12,23;CL:0000540,1.05e-11,33;CL:0000047,1.05e-11,33;CL:0000031,1.05e-11,33;CL:0000404,1.05e-11,33;CL:0000393,1.24e-09,39;CL:0000211,1.24e-09,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.04e-25!75;UBERON:0001016!2.04e-25!75;UBERON:0001017!1.28e-24!73;UBERON:0005743!1.28e-24!73;UBERON:0004121!5.09e-20!102;UBERON:0000924!5.09e-20!102;UBERON:0006601!5.09e-20!102;UBERON:0001049!7.18e-20!52;UBERON:0005068!7.18e-20!52;UBERON:0006241!7.18e-20!52;UBERON:0007135!7.18e-20!52;UBERON:0000033!6.41e-19!63;UBERON:0002346!1.38e-18!71;UBERON:0003075!1.38e-18!71;UBERON:0007284!1.38e-18!71;UBERON:0000955!1.45e-18!50;UBERON:0006238!1.45e-18!50;UBERON:0002616!5.48e-18!49;UBERON:0002020!2.27e-17!34;UBERON:0003056!2.91e-16!49;UBERON:0000153!3.36e-15!94;UBERON:0003080!5.18e-15!40;UBERON:0002791!1.57e-14!29;UBERON:0003528!1.57e-14!29;UBERON:0001893!1.57e-14!29;UBERON:0002780!1.98e-14!39;UBERON:0001890!1.98e-14!39;UBERON:0006240!1.98e-14!39;UBERON:0007811!1.34e-13!86;UBERON:0000956!3.81e-10!21;UBERON:0001869!3.81e-10!21;UBERON:0000203!3.81e-10!21;UBERON:0002619!2.19e-08!17 | |ontology_enrichment_uberon=UBERON:0000073!2.04e-25!75;UBERON:0001016!2.04e-25!75;UBERON:0001017!1.28e-24!73;UBERON:0005743!1.28e-24!73;UBERON:0004121!5.09e-20!102;UBERON:0000924!5.09e-20!102;UBERON:0006601!5.09e-20!102;UBERON:0001049!7.18e-20!52;UBERON:0005068!7.18e-20!52;UBERON:0006241!7.18e-20!52;UBERON:0007135!7.18e-20!52;UBERON:0000033!6.41e-19!63;UBERON:0002346!1.38e-18!71;UBERON:0003075!1.38e-18!71;UBERON:0007284!1.38e-18!71;UBERON:0000955!1.45e-18!50;UBERON:0006238!1.45e-18!50;UBERON:0002616!5.48e-18!49;UBERON:0002020!2.27e-17!34;UBERON:0003056!2.91e-16!49;UBERON:0000153!3.36e-15!94;UBERON:0003080!5.18e-15!40;UBERON:0002791!1.57e-14!29;UBERON:0003528!1.57e-14!29;UBERON:0001893!1.57e-14!29;UBERON:0002780!1.98e-14!39;UBERON:0001890!1.98e-14!39;UBERON:0006240!1.98e-14!39;UBERON:0007811!1.34e-13!86;UBERON:0000956!3.81e-10!21;UBERON:0001869!3.81e-10!21;UBERON:0000203!3.81e-10!21;UBERON:0002619!2.19e-08!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.59e-25,75;UBERON:0001017,1.02e-24,73;UBERON:0004121,7.55e-22,95;UBERON:0000924,7.55e-22,95;UBERON:0006601,7.55e-22,95;UBERON:0002346,3.50e-21,64;UBERON:0003075,3.50e-21,64;UBERON:0007284,3.50e-21,64;UBERON:0000073,5.53e-21,54;UBERON:0001049,6.33e-20,52;UBERON:0005068,6.33e-20,52;UBERON:0006241,6.33e-20,52;UBERON:0007135,6.33e-20,52;UBERON:0010371,1.25e-17,73;UBERON:0002020,1.63e-17,34;UBERON:0000955,2.21e-17,47;UBERON:0006238,2.21e-17,47;UBERON:0002616,8.25e-17,46;UBERON:0003056,2.71e-16,49;UBERON:0003080,5.00e-15,40;UBERON:0010314,1.01e-14,92;UBERON:0003528,1.19e-14,29;UBERON:0002791,1.19e-14,29;UBERON:0001893,1.19e-14,29;UBERON:0002780,1.93e-14,39;UBERON:0001890,1.93e-14,39;UBERON:0006240,1.93e-14,39;UBERON:0000956,3.19e-10,21;UBERON:0001869,3.19e-10,21;UBERON:0000203,3.19e-10,21;UBERON:0002619,1.89e-08,17 | |||
|phase1_expression=5.2849119544582,0,0,0,0,0,0.233612640595526,5.29405626110463,1.12630977721333,0.468129052643987,2.05461561870606,1.27635454392538,2.73921167889929,1.74840804837995,0.333109761815663,1.01237633694913,0.699561878128147,1.26184866143295,1.09691546884591,1.69755860719212,1.44573593256819,0.992909512008853,1.56719873483361,0,0.45881856213434,0,0,0,0,0,0,0,1.84519436275371,0,0,0,0.204169356262369,3.34825304589526,0.7813353445238,5.75876118371178,2.35292595212406,4.09827290975067,6.311634589405,2.89562681343828,1.72340783073175,4.22157529971868,3.12956537739216,5.45062890951116,6.59058548203415,7.58276606389705,3.49966054063406,2.87505128729943,2.68452169692378,2.90144856804538,0,1.02903774414379,1.43266719969378,1.54701627683233,4.45096213891115,6.34789175126439,10.775133859605,4.40497891689872,3.55717918444456,3.5995988691256,0.988866362566974,2.1314403448383,3.89480143673926,6.53171119046643,5.80661828927475,4.72520784160917,5.67877395648731,5.99867067247988,5.74258206474195,4.5321595709533,7.3801012684042,4.5960939330501,4.40463523997555,5.36286819957788,4.6081959976873,6.98997324970027,6.86157327018072,5.2091337055676,5.58365998002762,4.50210088025344,5.65353516774197,5.00868595305235,6.12198227436143,8.20157561631323,3.63485727999283,5.44115232768856,2.02905142091174,0.860423876981386,0.679971333707751,0,0,0,1.68533304158102,2.89731548382698,1.81850203222008,4.94675404314476,2.81686839553361,2.56652954828636,0,7.11066703153331,0.432982082022428,0.253359865475099,0,0.5709193985953,2.07150306917737,2.9688427812965,2.60227990149204,1.52232739156071,1.84492397804847,1.65794904607885,2.3517741427141,1.25666591329675,2.47194967734374,0.578397427679647,2.65383165584962,3.39710384889559,2.65009822152472,1.45462575940567,1.86391761218122,4.68449275218475,4.39838084308256,1.02182822083437,0.11981512450592,0,0.508280908292259,6.29120685500255,6.8625090422794,10.0523481690292,4.86708096538374,5.11430914660661,3.32460871295296,4.2182728397617,3.97173519016234,2.23932547098167,0.758168275301024,1.26265113531884,4.42409506073193,6.43725892413724,5.04173963454978,5.12396380641431,3.46986145671772,3.97152532883034,3.65436725782942,2.06962696591213,5.38919982332106,5.48407632486676,3.87092473160687,4.16471891612392,4.44875598760957,2.089512999133,3.2925141825271,4.97585667046233,0,0.772043721344145,0.284163499395593,1.65700618028402,3.75241695969754,2.70093092191522,2.60419209143731,2.75469924446365,2.46827380619805,2.09280550275367,1.87791380979733,1.98501082024188,1.81015834904829,2.62667942526552,2.26992666728396,2.33919979880532,1.97595103761946,2.01309628140558,5.46753866266731,7.20332286654991,0,0.264450566663544,4.26576501070468,2.78684006232526,3.09281907173024,2.01683524623343,3.11329261382818,1.14135375667535,0.474529061544512,0.823494773620054,0.754005626400808,2.18852119245266,1.36474860983384,0.898819408654221,0,0.398282546508734,2.27601481143698,3.42745537829186,2.25415471346161,2.03651327845314,3.87904974335251,2.17421041659988,2.46622494784603,1.62371162777562,1.09899109488962,1.23397163921801,0.592905254174298,1.33476084572875,2.55526693647164,1.57403478669398,2.02860121388503,2.65294875727659,0.763877555344259,1.15078454980324,0.972811360650212,1.09824565275233,0,1.48856379067401,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,2.03228509183265,3.22135400009824,3.91115943460862,2.54617628662782,2.58159273117352,2.01007508930179,1.42826184531608,1.95133647857799,3.31033802623001,3.10050565508285,6.69710028361446,2.78567635016755,3.9717545829156,2.89298117163023,0,1.08781136763742,0.491764273019036,0,4.65596710964597,3.6335622843583,3.93443868904021,4.79694761688309,2.83957397474631,2.34263246577983,3.44677436372478,3.34556317133573,4.01037613348309,3.39691836946599,2.83367491172426,2.33804686329049,1.97643888973262,5.78378369559253,3.12268187458191,5.1639025063504,5.04949573996086,2.3095817216155,1.32745138339963,1.21390318077491,2.72091201268276,1.88605079755898,2.06711325016541,1.22974059177571,2.84271122485043,1.81766864738753,1.06949213515416,0.948110273807448,2.10837217149998,1.03135543248187,0.680879211507576,2.52085531643834,3.75140182969988,4.50107773566344,2.12808280370728,5.17269571046005,4.11372551505302,3.65357938937519,0.938686832254841,1.27099242518292,0,0.65954501176592,1.93757312035087,2.0506394475573,2.626191568069,1.96969079694074,0.291480836629851,3.70850604021019,0.854354403989263,2.88941615148511,2.03713980106683,1.69531611304222,2.05041341581538,0.686334519619568,1.35982743995084,1.39951452323658,1.24379976423981,0.954670618015114,3.63786392618306,4.06638934253697,2.26811215725783,1.25452977608681,1.74690050996942,1.21377911746339,1.73572257023205,0.785267825952089,0.518459893167171,0.621339313086926,0,3.43888055901151,6.45288112782681,6.02798683866548,5.03723311563151,7.7719817725758,5.04636126176742,7.16124116641726,5.24296722128554,0.483168241652012,0.864090018773596,2.52808896502543,2.43270258348197,2.15693010046137,1.16928740680016,2.8644271306797,3.3775830312815,3.4856680360791,2.95379054349154,2.01932899896295,1.98137697303,2.21817607301049,1.8516997340553,2.11666051608725,1.40252282617883,1.58711268530648,0.443971906748129,0.358855426437903,0.503653849092235,2.31827512838629,2.064507229963,2.38097111547445,1.92931541171159,0,5.64751842617067,3.22227665555024,4.58316410751517,4.29632955859219,7.53590771747707,8.3093328712867,5.40018000185445,3.15224842256954,4.07828168085784,5.1776031175182,2.90604573235695,5.1873233542134,4.43907374960749,4.132814190161,1.88651846365184,2.20612210140017,3.11145418922261,3.29656091582231,3.53011130550997,2.52697211763797,3.04175159868288,2.64076877940507,2.99652823903624,3.00918216302886,2.64203157195821,2.38146845641537,3.47652977834566,4.82273051159263,1.64834360321323,3.09117732282234,2.40008476669791,2.30718548007139,3.33810665926249,2.18019624948493,3.3879376949519,3.21535509988371,2.0122077016005,2.36762740294059,3.53090695999241,2.80571135828869,3.91495559809775,3.15214343601803,0.818462086339379,2.01417893541756,2.3148793317737,5.9954538705107,3.27504251823572,4.08255002691767,1.53030665655075,3.08827986767322,2.55054619182464 | |phase1_expression=5.2849119544582,0,0,0,0,0,0.233612640595526,5.29405626110463,1.12630977721333,0.468129052643987,2.05461561870606,1.27635454392538,2.73921167889929,1.74840804837995,0.333109761815663,1.01237633694913,0.699561878128147,1.26184866143295,1.09691546884591,1.69755860719212,1.44573593256819,0.992909512008853,1.56719873483361,0,0.45881856213434,0,0,0,0,0,0,0,1.84519436275371,0,0,0,0.204169356262369,3.34825304589526,0.7813353445238,5.75876118371178,2.35292595212406,4.09827290975067,6.311634589405,2.89562681343828,1.72340783073175,4.22157529971868,3.12956537739216,5.45062890951116,6.59058548203415,7.58276606389705,3.49966054063406,2.87505128729943,2.68452169692378,2.90144856804538,0,1.02903774414379,1.43266719969378,1.54701627683233,4.45096213891115,6.34789175126439,10.775133859605,4.40497891689872,3.55717918444456,3.5995988691256,0.988866362566974,2.1314403448383,3.89480143673926,6.53171119046643,5.80661828927475,4.72520784160917,5.67877395648731,5.99867067247988,5.74258206474195,4.5321595709533,7.3801012684042,4.5960939330501,4.40463523997555,5.36286819957788,4.6081959976873,6.98997324970027,6.86157327018072,5.2091337055676,5.58365998002762,4.50210088025344,5.65353516774197,5.00868595305235,6.12198227436143,8.20157561631323,3.63485727999283,5.44115232768856,2.02905142091174,0.860423876981386,0.679971333707751,0,0,0,1.68533304158102,2.89731548382698,1.81850203222008,4.94675404314476,2.81686839553361,2.56652954828636,0,7.11066703153331,0.432982082022428,0.253359865475099,0,0.5709193985953,2.07150306917737,2.9688427812965,2.60227990149204,1.52232739156071,1.84492397804847,1.65794904607885,2.3517741427141,1.25666591329675,2.47194967734374,0.578397427679647,2.65383165584962,3.39710384889559,2.65009822152472,1.45462575940567,1.86391761218122,4.68449275218475,4.39838084308256,1.02182822083437,0.11981512450592,0,0.508280908292259,6.29120685500255,6.8625090422794,10.0523481690292,4.86708096538374,5.11430914660661,3.32460871295296,4.2182728397617,3.97173519016234,2.23932547098167,0.758168275301024,1.26265113531884,4.42409506073193,6.43725892413724,5.04173963454978,5.12396380641431,3.46986145671772,3.97152532883034,3.65436725782942,2.06962696591213,5.38919982332106,5.48407632486676,3.87092473160687,4.16471891612392,4.44875598760957,2.089512999133,3.2925141825271,4.97585667046233,0,0.772043721344145,0.284163499395593,1.65700618028402,3.75241695969754,2.70093092191522,2.60419209143731,2.75469924446365,2.46827380619805,2.09280550275367,1.87791380979733,1.98501082024188,1.81015834904829,2.62667942526552,2.26992666728396,2.33919979880532,1.97595103761946,2.01309628140558,5.46753866266731,7.20332286654991,0,0.264450566663544,4.26576501070468,2.78684006232526,3.09281907173024,2.01683524623343,3.11329261382818,1.14135375667535,0.474529061544512,0.823494773620054,0.754005626400808,2.18852119245266,1.36474860983384,0.898819408654221,0,0.398282546508734,2.27601481143698,3.42745537829186,2.25415471346161,2.03651327845314,3.87904974335251,2.17421041659988,2.46622494784603,1.62371162777562,1.09899109488962,1.23397163921801,0.592905254174298,1.33476084572875,2.55526693647164,1.57403478669398,2.02860121388503,2.65294875727659,0.763877555344259,1.15078454980324,0.972811360650212,1.09824565275233,0,1.48856379067401,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,2.03228509183265,3.22135400009824,3.91115943460862,2.54617628662782,2.58159273117352,2.01007508930179,1.42826184531608,1.95133647857799,3.31033802623001,3.10050565508285,6.69710028361446,2.78567635016755,3.9717545829156,2.89298117163023,0,1.08781136763742,0.491764273019036,0,4.65596710964597,3.6335622843583,3.93443868904021,4.79694761688309,2.83957397474631,2.34263246577983,3.44677436372478,3.34556317133573,4.01037613348309,3.39691836946599,2.83367491172426,2.33804686329049,1.97643888973262,5.78378369559253,3.12268187458191,5.1639025063504,5.04949573996086,2.3095817216155,1.32745138339963,1.21390318077491,2.72091201268276,1.88605079755898,2.06711325016541,1.22974059177571,2.84271122485043,1.81766864738753,1.06949213515416,0.948110273807448,2.10837217149998,1.03135543248187,0.680879211507576,2.52085531643834,3.75140182969988,4.50107773566344,2.12808280370728,5.17269571046005,4.11372551505302,3.65357938937519,0.938686832254841,1.27099242518292,0,0.65954501176592,1.93757312035087,2.0506394475573,2.626191568069,1.96969079694074,0.291480836629851,3.70850604021019,0.854354403989263,2.88941615148511,2.03713980106683,1.69531611304222,2.05041341581538,0.686334519619568,1.35982743995084,1.39951452323658,1.24379976423981,0.954670618015114,3.63786392618306,4.06638934253697,2.26811215725783,1.25452977608681,1.74690050996942,1.21377911746339,1.73572257023205,0.785267825952089,0.518459893167171,0.621339313086926,0,3.43888055901151,6.45288112782681,6.02798683866548,5.03723311563151,7.7719817725758,5.04636126176742,7.16124116641726,5.24296722128554,0.483168241652012,0.864090018773596,2.52808896502543,2.43270258348197,2.15693010046137,1.16928740680016,2.8644271306797,3.3775830312815,3.4856680360791,2.95379054349154,2.01932899896295,1.98137697303,2.21817607301049,1.8516997340553,2.11666051608725,1.40252282617883,1.58711268530648,0.443971906748129,0.358855426437903,0.503653849092235,2.31827512838629,2.064507229963,2.38097111547445,1.92931541171159,0,5.64751842617067,3.22227665555024,4.58316410751517,4.29632955859219,7.53590771747707,8.3093328712867,5.40018000185445,3.15224842256954,4.07828168085784,5.1776031175182,2.90604573235695,5.1873233542134,4.43907374960749,4.132814190161,1.88651846365184,2.20612210140017,3.11145418922261,3.29656091582231,3.53011130550997,2.52697211763797,3.04175159868288,2.64076877940507,2.99652823903624,3.00918216302886,2.64203157195821,2.38146845641537,3.47652977834566,4.82273051159263,1.64834360321323,3.09117732282234,2.40008476669791,2.30718548007139,3.33810665926249,2.18019624948493,3.3879376949519,3.21535509988371,2.0122077016005,2.36762740294059,3.53090695999241,2.80571135828869,3.91495559809775,3.15214343601803,0.818462086339379,2.01417893541756,2.3148793317737,5.9954538705107,3.27504251823572,4.08255002691767,1.53030665655075,3.08827986767322,2.55054619182464 | ||
|short_description=p2@St3gal2 | |short_description=p2@St3gal2 | ||
}} | }} |
Latest revision as of 12:29, 1 October 2015
Short description: | p2@St3gal2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_St3gal2_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 9bp_to_NM_009179, uc009nlj.2, uc009nlk.2_5end |
EntrezGene: | St3gal2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.05e-15 | 43 |
ectodermal cell | 6.19e-15 | 44 |
neurectodermal cell | 6.19e-15 | 44 |
CNS neuron (sensu Vertebrata) | 2.18e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.18e-12 | 23 |
neuron | 1.05e-11 | 33 |
neuronal stem cell | 1.05e-11 | 33 |
neuroblast | 1.05e-11 | 33 |
electrically signaling cell | 1.05e-11 | 33 |
electrically responsive cell | 1.24e-09 | 39 |
electrically active cell | 1.24e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.59e-25 | 75 |
central nervous system | 1.02e-24 | 73 |
ectoderm-derived structure | 7.55e-22 | 95 |
ectoderm | 7.55e-22 | 95 |
presumptive ectoderm | 7.55e-22 | 95 |
neurectoderm | 3.50e-21 | 64 |
neural plate | 3.50e-21 | 64 |
presumptive neural plate | 3.50e-21 | 64 |
regional part of nervous system | 5.53e-21 | 54 |
neural tube | 6.33e-20 | 52 |
neural rod | 6.33e-20 | 52 |
future spinal cord | 6.33e-20 | 52 |
neural keel | 6.33e-20 | 52 |
ecto-epithelium | 1.25e-17 | 73 |
gray matter | 1.63e-17 | 34 |
brain | 2.21e-17 | 47 |
future brain | 2.21e-17 | 47 |
regional part of brain | 8.25e-17 | 46 |
pre-chordal neural plate | 2.71e-16 | 49 |
anterior neural tube | 5.00e-15 | 40 |
structure with developmental contribution from neural crest | 1.01e-14 | 92 |
brain grey matter | 1.19e-14 | 29 |
regional part of telencephalon | 1.19e-14 | 29 |
telencephalon | 1.19e-14 | 29 |
regional part of forebrain | 1.93e-14 | 39 |
forebrain | 1.93e-14 | 39 |
future forebrain | 1.93e-14 | 39 |
cerebral cortex | 3.19e-10 | 21 |
cerebral hemisphere | 3.19e-10 | 21 |
pallium | 3.19e-10 | 21 |
regional part of cerebral cortex | 1.89e-08 | 17 |